Strain Fitness in Escherichia coli Nissle 1917 around ECOLIN_RS04595

Experiment: Bas22

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECOLIN_RS04585 and ECOLIN_RS04590 overlap by 1 nucleotidesECOLIN_RS04590 and ECOLIN_RS04595 are separated by 6 nucleotidesECOLIN_RS04595 and ECOLIN_RS04600 are separated by 17 nucleotidesECOLIN_RS04600 and ECOLIN_RS04605 are separated by 217 nucleotides ECOLIN_RS04585: ECOLIN_RS04585 - arginine ABC transporter permease ArtM, at 927,671 to 928,339 _RS04585 ECOLIN_RS04590: ECOLIN_RS04590 - arginine ABC transporter permease ArtQ, at 928,339 to 929,055 _RS04590 ECOLIN_RS04595: ECOLIN_RS04595 - arginine ABC transporter substrate-binding protein ArtI, at 929,062 to 929,793 _RS04595 ECOLIN_RS04600: ECOLIN_RS04600 - arginine ABC transporter ATP-binding protein ArtP, at 929,811 to 930,539 _RS04600 ECOLIN_RS04605: ECOLIN_RS04605 - lipoprotein, at 930,757 to 931,272 _RS04605 Position (kb) 929 930Strain fitness (log2 ratio) -1 0 1at 929.628 kb on + strand, within ECOLIN_RS04595at 930.140 kb on - strand, within ECOLIN_RS04600at 930.570 kb on - strandat 930.660 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas22
remove
929,628 + ECOLIN_RS04595 0.77 -0.6
930,140 - ECOLIN_RS04600 0.45 +0.7
930,570 - -0.8
930,660 - -0.0

Or see this region's nucleotide sequence