Experiment: Bas22
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECOLIN_RS02570 and ECOLIN_RS02575 are separated by 148 nucleotides ECOLIN_RS02575 and ECOLIN_RS02580 are separated by 11 nucleotides ECOLIN_RS02580 and ECOLIN_RS02585 overlap by 1 nucleotides ECOLIN_RS02585 and ECOLIN_RS02590 overlap by 11 nucleotides
ECOLIN_RS02570: ECOLIN_RS02570 - MFS transporter, at 524,608 to 525,972
_RS02570
ECOLIN_RS02575: ECOLIN_RS02575 - heme o synthase, at 526,121 to 527,011
_RS02575
ECOLIN_RS02580: ECOLIN_RS02580 - cytochrome o ubiquinol oxidase subunit IV, at 527,023 to 527,352
_RS02580
ECOLIN_RS02585: ECOLIN_RS02585 - cytochrome o ubiquinol oxidase subunit III, at 527,352 to 527,966
_RS02585
ECOLIN_RS02590: ECOLIN_RS02590 - cytochrome o ubiquinol oxidase subunit I, at 527,956 to 529,947
_RS02590
Position (kb) 526
527
528 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 525.165 kb on - strand, within ECOLIN_RS02570 at 525.310 kb on - strand, within ECOLIN_RS02570 at 525.391 kb on - strand, within ECOLIN_RS02570 at 525.395 kb on - strand, within ECOLIN_RS02570 at 525.395 kb on - strand, within ECOLIN_RS02570 at 525.535 kb on - strand, within ECOLIN_RS02570 at 525.661 kb on - strand, within ECOLIN_RS02570 at 525.661 kb on - strand, within ECOLIN_RS02570 at 525.807 kb on + strand, within ECOLIN_RS02570 at 525.808 kb on - strand, within ECOLIN_RS02570 at 526.163 kb on - strand at 526.314 kb on + strand, within ECOLIN_RS02575 at 526.314 kb on + strand, within ECOLIN_RS02575 at 526.375 kb on + strand, within ECOLIN_RS02575 at 526.376 kb on - strand, within ECOLIN_RS02575 at 526.632 kb on + strand, within ECOLIN_RS02575 at 526.632 kb on + strand, within ECOLIN_RS02575 at 526.632 kb on + strand, within ECOLIN_RS02575 at 526.640 kb on - strand, within ECOLIN_RS02575 at 526.640 kb on - strand, within ECOLIN_RS02575 at 526.642 kb on - strand, within ECOLIN_RS02575 at 526.642 kb on - strand, within ECOLIN_RS02575 at 526.653 kb on + strand, within ECOLIN_RS02575 at 526.717 kb on + strand, within ECOLIN_RS02575 at 526.837 kb on - strand, within ECOLIN_RS02575 at 526.837 kb on - strand, within ECOLIN_RS02575 at 526.891 kb on - strand, within ECOLIN_RS02575 at 526.891 kb on - strand, within ECOLIN_RS02575 at 527.042 kb on + strand at 527.043 kb on - strand at 527.059 kb on - strand, within ECOLIN_RS02580 at 527.121 kb on + strand, within ECOLIN_RS02580 at 527.146 kb on - strand, within ECOLIN_RS02580 at 527.301 kb on - strand, within ECOLIN_RS02580 at 527.354 kb on - strand at 527.354 kb on - strand at 527.354 kb on - strand at 527.371 kb on + strand at 527.504 kb on + strand, within ECOLIN_RS02585 at 527.614 kb on + strand, within ECOLIN_RS02585 at 527.695 kb on + strand, within ECOLIN_RS02585 at 527.719 kb on + strand, within ECOLIN_RS02585 at 527.720 kb on - strand, within ECOLIN_RS02585 at 527.827 kb on + strand, within ECOLIN_RS02585 at 527.831 kb on + strand, within ECOLIN_RS02585 at 527.832 kb on - strand, within ECOLIN_RS02585
Per-strain Table
Position Strand Gene LocusTag Fraction Bas22 remove 525,165 - ECOLIN_RS02570 0.41 +0.3 525,310 - ECOLIN_RS02570 0.51 +0.1 525,391 - ECOLIN_RS02570 0.57 -0.7 525,395 - ECOLIN_RS02570 0.58 +0.8 525,395 - ECOLIN_RS02570 0.58 -0.0 525,535 - ECOLIN_RS02570 0.68 -1.1 525,661 - ECOLIN_RS02570 0.77 -1.2 525,661 - ECOLIN_RS02570 0.77 +1.5 525,807 + ECOLIN_RS02570 0.88 -0.7 525,808 - ECOLIN_RS02570 0.88 -1.5 526,163 - -0.5 526,314 + ECOLIN_RS02575 0.22 -0.4 526,314 + ECOLIN_RS02575 0.22 -0.8 526,375 + ECOLIN_RS02575 0.29 -0.9 526,376 - ECOLIN_RS02575 0.29 -0.8 526,632 + ECOLIN_RS02575 0.57 -0.9 526,632 + ECOLIN_RS02575 0.57 -0.7 526,632 + ECOLIN_RS02575 0.57 -0.8 526,640 - ECOLIN_RS02575 0.58 -0.9 526,640 - ECOLIN_RS02575 0.58 -0.6 526,642 - ECOLIN_RS02575 0.58 -1.4 526,642 - ECOLIN_RS02575 0.58 -1.2 526,653 + ECOLIN_RS02575 0.60 -1.4 526,717 + ECOLIN_RS02575 0.67 +0.1 526,837 - ECOLIN_RS02575 0.80 +1.6 526,837 - ECOLIN_RS02575 0.80 -2.8 526,891 - ECOLIN_RS02575 0.86 -0.4 526,891 - ECOLIN_RS02575 0.86 -1.3 527,042 + -1.2 527,043 - -0.7 527,059 - ECOLIN_RS02580 0.11 -1.8 527,121 + ECOLIN_RS02580 0.30 -0.4 527,146 - ECOLIN_RS02580 0.37 -0.8 527,301 - ECOLIN_RS02580 0.84 -0.9 527,354 - -1.9 527,354 - -1.0 527,354 - -1.4 527,371 + -0.3 527,504 + ECOLIN_RS02585 0.25 -1.1 527,614 + ECOLIN_RS02585 0.43 -0.7 527,695 + ECOLIN_RS02585 0.56 -0.4 527,719 + ECOLIN_RS02585 0.60 -1.7 527,720 - ECOLIN_RS02585 0.60 -0.8 527,827 + ECOLIN_RS02585 0.77 -0.0 527,831 + ECOLIN_RS02585 0.78 -2.7 527,832 - ECOLIN_RS02585 0.78 -1.0
Or see this region's nucleotide sequence