Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS15225

Experiment: Yeast Extract 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS15220 and HMPREF1078_RS15225 are separated by 16 nucleotidesHMPREF1078_RS15225 and HMPREF1078_RS15230 are separated by 200 nucleotides HMPREF1078_RS15220: HMPREF1078_RS15220 - RagB/SusD family nutrient uptake outer membrane protein, at 124,436 to 126,268 _RS15220 HMPREF1078_RS15225: HMPREF1078_RS15225 - DUF3823 domain-containing protein, at 126,285 to 126,959 _RS15225 HMPREF1078_RS15230: HMPREF1078_RS15230 - family 43 glycosylhydrolase, at 127,160 to 130,117 _RS15230 Position (kb) 126 127Strain fitness (log2 ratio) -3 -2 -1 0 1at 125.300 kb on - strand, within HMPREF1078_RS15220at 125.308 kb on + strand, within HMPREF1078_RS15220at 125.309 kb on - strand, within HMPREF1078_RS15220at 125.326 kb on + strand, within HMPREF1078_RS15220at 125.327 kb on - strand, within HMPREF1078_RS15220at 125.353 kb on + strand, within HMPREF1078_RS15220at 125.363 kb on - strand, within HMPREF1078_RS15220at 125.398 kb on + strand, within HMPREF1078_RS15220at 125.398 kb on + strand, within HMPREF1078_RS15220at 125.402 kb on + strand, within HMPREF1078_RS15220at 125.403 kb on - strand, within HMPREF1078_RS15220at 125.474 kb on - strand, within HMPREF1078_RS15220at 125.553 kb on + strand, within HMPREF1078_RS15220at 125.604 kb on + strand, within HMPREF1078_RS15220at 125.626 kb on - strand, within HMPREF1078_RS15220at 125.652 kb on + strand, within HMPREF1078_RS15220at 125.652 kb on + strand, within HMPREF1078_RS15220at 125.652 kb on + strand, within HMPREF1078_RS15220at 125.653 kb on - strand, within HMPREF1078_RS15220at 125.737 kb on + strand, within HMPREF1078_RS15220at 125.737 kb on + strand, within HMPREF1078_RS15220at 125.738 kb on - strand, within HMPREF1078_RS15220at 125.741 kb on - strand, within HMPREF1078_RS15220at 125.849 kb on - strand, within HMPREF1078_RS15220at 126.017 kb on - strand, within HMPREF1078_RS15220at 126.242 kb on - strandat 126.242 kb on - strandat 126.285 kb on - strandat 126.294 kb on - strandat 126.296 kb on - strandat 126.296 kb on - strandat 126.393 kb on - strand, within HMPREF1078_RS15225at 126.393 kb on - strand, within HMPREF1078_RS15225at 126.453 kb on + strand, within HMPREF1078_RS15225at 126.465 kb on + strand, within HMPREF1078_RS15225at 126.650 kb on + strand, within HMPREF1078_RS15225at 126.710 kb on + strand, within HMPREF1078_RS15225at 126.711 kb on - strand, within HMPREF1078_RS15225at 126.871 kb on + strand, within HMPREF1078_RS15225at 126.871 kb on + strand, within HMPREF1078_RS15225at 126.930 kb on - strandat 126.933 kb on + strandat 126.934 kb on - strandat 126.961 kb on - strandat 126.976 kb on + strandat 127.016 kb on - strandat 127.033 kb on + strandat 127.056 kb on + strandat 127.140 kb on + strandat 127.141 kb on - strandat 127.141 kb on - strandat 127.144 kb on + strandat 127.145 kb on - strandat 127.149 kb on - strandat 127.149 kb on - strandat 127.149 kb on - strandat 127.152 kb on + strandat 127.180 kb on - strandat 127.182 kb on + strandat 127.183 kb on - strandat 127.285 kb on + strandat 127.286 kb on - strandat 127.301 kb on + strandat 127.301 kb on + strandat 127.508 kb on + strand, within HMPREF1078_RS15230at 127.743 kb on - strand, within HMPREF1078_RS15230at 127.884 kb on - strand, within HMPREF1078_RS15230at 127.955 kb on + strand, within HMPREF1078_RS15230at 127.955 kb on + strand, within HMPREF1078_RS15230at 127.956 kb on - strand, within HMPREF1078_RS15230at 127.956 kb on - strand, within HMPREF1078_RS15230at 127.956 kb on - strand, within HMPREF1078_RS15230

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Per-strain Table

Position Strand Gene LocusTag Fraction Yeast Extract 1 x (C)
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125,300 - HMPREF1078_RS15220 0.47 +1.5
125,308 + HMPREF1078_RS15220 0.48 +1.3
125,309 - HMPREF1078_RS15220 0.48 -1.0
125,326 + HMPREF1078_RS15220 0.49 -1.7
125,327 - HMPREF1078_RS15220 0.49 +0.8
125,353 + HMPREF1078_RS15220 0.50 +0.5
125,363 - HMPREF1078_RS15220 0.51 -1.8
125,398 + HMPREF1078_RS15220 0.52 +0.5
125,398 + HMPREF1078_RS15220 0.52 +0.9
125,402 + HMPREF1078_RS15220 0.53 -0.4
125,403 - HMPREF1078_RS15220 0.53 -2.2
125,474 - HMPREF1078_RS15220 0.57 +0.5
125,553 + HMPREF1078_RS15220 0.61 -0.1
125,604 + HMPREF1078_RS15220 0.64 -3.3
125,626 - HMPREF1078_RS15220 0.65 -0.8
125,652 + HMPREF1078_RS15220 0.66 +0.7
125,652 + HMPREF1078_RS15220 0.66 -0.7
125,652 + HMPREF1078_RS15220 0.66 +0.3
125,653 - HMPREF1078_RS15220 0.66 +0.9
125,737 + HMPREF1078_RS15220 0.71 +0.5
125,737 + HMPREF1078_RS15220 0.71 +0.2
125,738 - HMPREF1078_RS15220 0.71 +0.0
125,741 - HMPREF1078_RS15220 0.71 +1.7
125,849 - HMPREF1078_RS15220 0.77 +0.1
126,017 - HMPREF1078_RS15220 0.86 -0.6
126,242 - -0.5
126,242 - +0.3
126,285 - +0.7
126,294 - +0.1
126,296 - -0.5
126,296 - -0.4
126,393 - HMPREF1078_RS15225 0.16 -0.6
126,393 - HMPREF1078_RS15225 0.16 +0.1
126,453 + HMPREF1078_RS15225 0.25 +0.5
126,465 + HMPREF1078_RS15225 0.27 -0.1
126,650 + HMPREF1078_RS15225 0.54 +0.1
126,710 + HMPREF1078_RS15225 0.63 +0.3
126,711 - HMPREF1078_RS15225 0.63 +0.4
126,871 + HMPREF1078_RS15225 0.87 +0.9
126,871 + HMPREF1078_RS15225 0.87 +0.3
126,930 - +1.1
126,933 + -0.9
126,934 - +0.8
126,961 - -0.5
126,976 + +0.7
127,016 - +0.2
127,033 + +1.5
127,056 + +1.3
127,140 + +0.2
127,141 - -2.0
127,141 - -0.3
127,144 + +0.1
127,145 - +0.1
127,149 - +0.0
127,149 - -0.9
127,149 - +0.5
127,152 + +1.1
127,180 - +0.1
127,182 + +0.6
127,183 - -0.9
127,285 + -0.1
127,286 - +0.1
127,301 + -0.8
127,301 + -0.2
127,508 + HMPREF1078_RS15230 0.12 +0.2
127,743 - HMPREF1078_RS15230 0.20 -0.0
127,884 - HMPREF1078_RS15230 0.24 +1.5
127,955 + HMPREF1078_RS15230 0.27 -0.9
127,955 + HMPREF1078_RS15230 0.27 +0.5
127,956 - HMPREF1078_RS15230 0.27 -0.1
127,956 - HMPREF1078_RS15230 0.27 +1.0
127,956 - HMPREF1078_RS15230 0.27 +0.2

Or see this region's nucleotide sequence