Experiment: Yeast Extract 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14195 and HMPREF1078_RS14200 are separated by 87 nucleotides HMPREF1078_RS14200 and HMPREF1078_RS14205 are separated by 21 nucleotides HMPREF1078_RS14205 and HMPREF1078_RS14210 are separated by 11 nucleotides HMPREF1078_RS14210 and HMPREF1078_RS14215 are separated by 21 nucleotides
HMPREF1078_RS14195: HMPREF1078_RS14195 - 4'-phosphopantetheinyl transferase superfamily protein, at 311,400 to 312,017
_RS14195
HMPREF1078_RS14200: HMPREF1078_RS14200 - shikimate dehydrogenase, at 312,105 to 312,845
_RS14200
HMPREF1078_RS14205: HMPREF1078_RS14205 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 312,867 to 313,634
_RS14205
HMPREF1078_RS14210: HMPREF1078_RS14210 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 313,646 to 314,593
_RS14210
HMPREF1078_RS14215: HMPREF1078_RS14215 - PhoH family protein, at 314,615 to 315,637
_RS14215
Position (kb) 312
313
314 Strain fitness (log2 ratio) -2
-1
0
1
2 at 312.039 kb on - strand at 312.039 kb on - strand at 312.040 kb on + strand at 312.040 kb on + strand at 312.041 kb on - strand at 312.041 kb on - strand at 312.041 kb on - strand at 312.041 kb on - strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.042 kb on + strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.043 kb on - strand at 312.045 kb on - strand at 312.056 kb on + strand at 312.062 kb on + strand at 312.062 kb on + strand at 312.063 kb on - strand at 312.071 kb on + strand at 312.072 kb on - strand at 312.072 kb on - strand at 312.077 kb on + strand at 312.100 kb on - strand at 312.100 kb on - strand at 312.106 kb on + strand at 312.107 kb on - strand at 312.142 kb on - strand at 312.223 kb on + strand, within HMPREF1078_RS14200 at 312.224 kb on - strand, within HMPREF1078_RS14200 at 312.224 kb on - strand, within HMPREF1078_RS14200 at 312.317 kb on + strand, within HMPREF1078_RS14200 at 312.334 kb on + strand, within HMPREF1078_RS14200 at 312.368 kb on - strand, within HMPREF1078_RS14200 at 312.430 kb on - strand, within HMPREF1078_RS14200 at 312.658 kb on + strand, within HMPREF1078_RS14200 at 312.706 kb on - strand, within HMPREF1078_RS14200 at 312.790 kb on + strand at 312.826 kb on - strand at 312.826 kb on - strand at 312.828 kb on + strand at 312.869 kb on - strand at 312.869 kb on - strand at 312.869 kb on - strand at 312.869 kb on - strand at 312.870 kb on + strand at 312.871 kb on - strand at 312.871 kb on - strand at 312.910 kb on + strand at 312.964 kb on - strand, within HMPREF1078_RS14205 at 313.034 kb on - strand, within HMPREF1078_RS14205 at 313.041 kb on - strand, within HMPREF1078_RS14205 at 313.099 kb on + strand, within HMPREF1078_RS14205 at 313.191 kb on - strand, within HMPREF1078_RS14205 at 313.200 kb on + strand, within HMPREF1078_RS14205 at 313.495 kb on - strand, within HMPREF1078_RS14205 at 313.538 kb on - strand, within HMPREF1078_RS14205 at 313.538 kb on - strand, within HMPREF1078_RS14205 at 313.538 kb on - strand, within HMPREF1078_RS14205 at 313.625 kb on - strand at 313.740 kb on + strand at 313.752 kb on + strand, within HMPREF1078_RS14210 at 313.753 kb on - strand, within HMPREF1078_RS14210 at 313.753 kb on - strand, within HMPREF1078_RS14210 at 313.773 kb on - strand, within HMPREF1078_RS14210 at 314.223 kb on - strand, within HMPREF1078_RS14210 at 314.252 kb on - strand, within HMPREF1078_RS14210 at 314.253 kb on + strand, within HMPREF1078_RS14210 at 314.253 kb on + strand, within HMPREF1078_RS14210 at 314.254 kb on - strand, within HMPREF1078_RS14210 at 314.430 kb on + strand, within HMPREF1078_RS14210 at 314.514 kb on + strand at 314.515 kb on - strand at 314.515 kb on - strand at 314.515 kb on - strand at 314.515 kb on - strand at 314.515 kb on - strand at 314.538 kb on + strand at 314.539 kb on - strand at 314.539 kb on - strand at 314.594 kb on - strand at 314.594 kb on - strand at 314.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Yeast Extract 1 x (C) remove 312,039 - -0.5 312,039 - +0.6 312,040 + -0.9 312,040 + +1.4 312,041 - +0.1 312,041 - -0.2 312,041 - -0.2 312,041 - +0.0 312,042 + -0.5 312,042 + +0.5 312,042 + -1.1 312,042 + -0.9 312,042 + -0.1 312,042 + -0.4 312,043 - +0.0 312,043 - -0.4 312,043 - +0.2 312,043 - -0.6 312,043 - -0.9 312,043 - +0.5 312,043 - -0.1 312,043 - -0.4 312,045 - +0.3 312,056 + -0.0 312,062 + -0.1 312,062 + -0.4 312,063 - +0.3 312,071 + +1.1 312,072 - +0.7 312,072 - +0.7 312,077 + +0.6 312,100 - -0.1 312,100 - +0.1 312,106 + -0.2 312,107 - -1.1 312,142 - -1.6 312,223 + HMPREF1078_RS14200 0.16 +0.6 312,224 - HMPREF1078_RS14200 0.16 +0.9 312,224 - HMPREF1078_RS14200 0.16 -1.8 312,317 + HMPREF1078_RS14200 0.29 +0.2 312,334 + HMPREF1078_RS14200 0.31 -0.3 312,368 - HMPREF1078_RS14200 0.35 -0.4 312,430 - HMPREF1078_RS14200 0.44 +1.4 312,658 + HMPREF1078_RS14200 0.75 -1.3 312,706 - HMPREF1078_RS14200 0.81 -0.3 312,790 + -0.7 312,826 - +0.3 312,826 - -1.7 312,828 + -0.3 312,869 - -0.9 312,869 - -0.3 312,869 - +0.7 312,869 - +0.3 312,870 + -0.4 312,871 - +0.3 312,871 - +0.9 312,910 + +0.1 312,964 - HMPREF1078_RS14205 0.13 +0.9 313,034 - HMPREF1078_RS14205 0.22 +0.9 313,041 - HMPREF1078_RS14205 0.23 +0.9 313,099 + HMPREF1078_RS14205 0.30 -0.1 313,191 - HMPREF1078_RS14205 0.42 +0.7 313,200 + HMPREF1078_RS14205 0.43 -0.6 313,495 - HMPREF1078_RS14205 0.82 -1.0 313,538 - HMPREF1078_RS14205 0.87 +2.7 313,538 - HMPREF1078_RS14205 0.87 -1.6 313,538 - HMPREF1078_RS14205 0.87 +0.3 313,625 - +0.1 313,740 + -0.6 313,752 + HMPREF1078_RS14210 0.11 -0.7 313,753 - HMPREF1078_RS14210 0.11 -0.6 313,753 - HMPREF1078_RS14210 0.11 +0.3 313,773 - HMPREF1078_RS14210 0.13 -0.7 314,223 - HMPREF1078_RS14210 0.61 +0.4 314,252 - HMPREF1078_RS14210 0.64 -0.2 314,253 + HMPREF1078_RS14210 0.64 +1.1 314,253 + HMPREF1078_RS14210 0.64 +0.4 314,254 - HMPREF1078_RS14210 0.64 +0.4 314,430 + HMPREF1078_RS14210 0.83 +1.7 314,514 + +0.1 314,515 - +0.6 314,515 - +0.6 314,515 - +0.4 314,515 - +0.6 314,515 - -1.0 314,538 + -0.6 314,539 - +0.9 314,539 - +0.2 314,594 - +0.0 314,594 - +0.5 314,594 - +1.2
Or see this region's nucleotide sequence