Experiment: Yeast Extract 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12405 and HMPREF1078_RS12410 are separated by 52 nucleotides HMPREF1078_RS12410 and HMPREF1078_RS12415 are separated by 13 nucleotides HMPREF1078_RS12415 and HMPREF1078_RS12420 are separated by 68 nucleotides
HMPREF1078_RS12405: HMPREF1078_RS12405 - hypothetical protein, at 471,096 to 473,051
_RS12405
HMPREF1078_RS12410: HMPREF1078_RS12410 - signal peptidase I, at 473,104 to 473,967
_RS12410
HMPREF1078_RS12415: HMPREF1078_RS12415 - O-antigen ligase family protein, at 473,981 to 475,804
_RS12415
HMPREF1078_RS12420: HMPREF1078_RS12420 - efflux RND transporter periplasmic adaptor subunit, at 475,873 to 476,937
_RS12420
Position (kb) 473
474
475
476 Strain fitness (log2 ratio) -2
-1
0
1
2 at 472.982 kb on + strand at 473.012 kb on - strand at 473.056 kb on - strand at 473.067 kb on + strand at 473.070 kb on - strand at 473.079 kb on + strand at 473.119 kb on - strand at 473.119 kb on - strand at 473.123 kb on + strand at 473.124 kb on - strand at 473.327 kb on + strand, within HMPREF1078_RS12410 at 473.328 kb on - strand, within HMPREF1078_RS12410 at 475.432 kb on + strand, within HMPREF1078_RS12415 at 475.791 kb on + strand at 475.792 kb on - strand at 475.879 kb on + strand at 475.899 kb on - strand at 476.114 kb on + strand, within HMPREF1078_RS12420 at 476.114 kb on + strand, within HMPREF1078_RS12420 at 476.116 kb on + strand, within HMPREF1078_RS12420 at 476.116 kb on + strand, within HMPREF1078_RS12420 at 476.116 kb on + strand, within HMPREF1078_RS12420 at 476.116 kb on + strand, within HMPREF1078_RS12420 at 476.117 kb on - strand, within HMPREF1078_RS12420 at 476.260 kb on + strand, within HMPREF1078_RS12420 at 476.260 kb on + strand, within HMPREF1078_RS12420 at 476.261 kb on - strand, within HMPREF1078_RS12420 at 476.261 kb on - strand, within HMPREF1078_RS12420 at 476.316 kb on - strand, within HMPREF1078_RS12420 at 476.316 kb on - strand, within HMPREF1078_RS12420 at 476.363 kb on - strand, within HMPREF1078_RS12420 at 476.445 kb on + strand, within HMPREF1078_RS12420 at 476.553 kb on - strand, within HMPREF1078_RS12420 at 476.592 kb on + strand, within HMPREF1078_RS12420 at 476.633 kb on + strand, within HMPREF1078_RS12420 at 476.634 kb on - strand, within HMPREF1078_RS12420 at 476.634 kb on - strand, within HMPREF1078_RS12420 at 476.664 kb on + strand, within HMPREF1078_RS12420 at 476.665 kb on - strand, within HMPREF1078_RS12420 at 476.665 kb on - strand, within HMPREF1078_RS12420 at 476.665 kb on - strand, within HMPREF1078_RS12420 at 476.683 kb on + strand, within HMPREF1078_RS12420 at 476.694 kb on - strand, within HMPREF1078_RS12420 at 476.698 kb on - strand, within HMPREF1078_RS12420 at 476.748 kb on - strand, within HMPREF1078_RS12420 at 476.771 kb on + strand, within HMPREF1078_RS12420 at 476.772 kb on - strand, within HMPREF1078_RS12420 at 476.797 kb on + strand, within HMPREF1078_RS12420
Per-strain Table
Position Strand Gene LocusTag Fraction Yeast Extract 1 x (C) remove 472,982 + +1.7 473,012 - -1.2 473,056 - -0.8 473,067 + +1.0 473,070 - -0.3 473,079 + -0.9 473,119 - +1.4 473,119 - -0.6 473,123 + -1.0 473,124 - -0.1 473,327 + HMPREF1078_RS12410 0.26 +0.2 473,328 - HMPREF1078_RS12410 0.26 -0.1 475,432 + HMPREF1078_RS12415 0.80 +0.3 475,791 + -0.0 475,792 - +0.1 475,879 + -0.7 475,899 - +0.8 476,114 + HMPREF1078_RS12420 0.23 +0.1 476,114 + HMPREF1078_RS12420 0.23 -0.5 476,116 + HMPREF1078_RS12420 0.23 -1.8 476,116 + HMPREF1078_RS12420 0.23 +1.0 476,116 + HMPREF1078_RS12420 0.23 +0.1 476,116 + HMPREF1078_RS12420 0.23 -0.4 476,117 - HMPREF1078_RS12420 0.23 -0.7 476,260 + HMPREF1078_RS12420 0.36 -0.5 476,260 + HMPREF1078_RS12420 0.36 -0.4 476,261 - HMPREF1078_RS12420 0.36 -0.6 476,261 - HMPREF1078_RS12420 0.36 +0.4 476,316 - HMPREF1078_RS12420 0.42 +0.4 476,316 - HMPREF1078_RS12420 0.42 +0.1 476,363 - HMPREF1078_RS12420 0.46 -1.4 476,445 + HMPREF1078_RS12420 0.54 -0.4 476,553 - HMPREF1078_RS12420 0.64 +0.0 476,592 + HMPREF1078_RS12420 0.68 +0.2 476,633 + HMPREF1078_RS12420 0.71 +0.9 476,634 - HMPREF1078_RS12420 0.71 +0.5 476,634 - HMPREF1078_RS12420 0.71 -1.0 476,664 + HMPREF1078_RS12420 0.74 +1.3 476,665 - HMPREF1078_RS12420 0.74 +0.5 476,665 - HMPREF1078_RS12420 0.74 +0.1 476,665 - HMPREF1078_RS12420 0.74 +0.3 476,683 + HMPREF1078_RS12420 0.76 +0.1 476,694 - HMPREF1078_RS12420 0.77 +0.5 476,698 - HMPREF1078_RS12420 0.77 -0.8 476,748 - HMPREF1078_RS12420 0.82 -0.9 476,771 + HMPREF1078_RS12420 0.84 -1.3 476,772 - HMPREF1078_RS12420 0.84 +1.8 476,797 + HMPREF1078_RS12420 0.87 +0.9
Or see this region's nucleotide sequence