Experiment: Yeast Extract 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08900 and HMPREF1078_RS08905 are separated by 11 nucleotides HMPREF1078_RS08905 and HMPREF1078_RS08910 are separated by 77 nucleotides HMPREF1078_RS08910 and HMPREF1078_RS08915 are separated by 31 nucleotides HMPREF1078_RS08915 and HMPREF1078_RS08920 are separated by 201 nucleotides
HMPREF1078_RS08900: HMPREF1078_RS08900 - site-specific integrase, at 372,843 to 374,078
_RS08900
HMPREF1078_RS08905: HMPREF1078_RS08905 - hypothetical protein, at 374,090 to 374,452
_RS08905
HMPREF1078_RS08910: HMPREF1078_RS08910 - helix-turn-helix domain-containing protein, at 374,530 to 374,835
_RS08910
HMPREF1078_RS08915: HMPREF1078_RS08915 - helix-turn-helix domain-containing protein, at 374,867 to 375,166
_RS08915
HMPREF1078_RS08920: HMPREF1078_RS08920 - helix-turn-helix domain-containing protein, at 375,368 to 375,730
_RS08920
Position (kb) 374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 373.252 kb on - strand, within HMPREF1078_RS08900 at 373.329 kb on - strand, within HMPREF1078_RS08900 at 373.685 kb on - strand, within HMPREF1078_RS08900 at 373.790 kb on - strand, within HMPREF1078_RS08900 at 373.806 kb on + strand, within HMPREF1078_RS08900 at 373.865 kb on + strand, within HMPREF1078_RS08900 at 373.865 kb on + strand, within HMPREF1078_RS08900 at 373.866 kb on - strand, within HMPREF1078_RS08900 at 373.906 kb on + strand, within HMPREF1078_RS08900 at 374.076 kb on + strand at 374.185 kb on + strand, within HMPREF1078_RS08905 at 374.185 kb on + strand, within HMPREF1078_RS08905 at 374.300 kb on + strand, within HMPREF1078_RS08905 at 374.346 kb on - strand, within HMPREF1078_RS08905 at 374.346 kb on - strand, within HMPREF1078_RS08905 at 374.411 kb on + strand, within HMPREF1078_RS08905 at 374.412 kb on - strand, within HMPREF1078_RS08905 at 374.412 kb on - strand, within HMPREF1078_RS08905 at 374.412 kb on - strand, within HMPREF1078_RS08905 at 374.424 kb on + strand at 374.425 kb on - strand at 374.699 kb on + strand, within HMPREF1078_RS08910 at 374.836 kb on - strand at 374.858 kb on + strand at 374.858 kb on + strand at 374.858 kb on + strand at 374.883 kb on + strand at 374.934 kb on + strand, within HMPREF1078_RS08915 at 375.150 kb on - strand at 375.153 kb on - strand at 375.153 kb on - strand at 375.214 kb on - strand at 375.286 kb on - strand at 375.299 kb on - strand at 375.299 kb on - strand at 375.299 kb on - strand at 375.438 kb on - strand, within HMPREF1078_RS08920
Per-strain Table
Position Strand Gene LocusTag Fraction Yeast Extract 1 x (C) remove 373,252 - HMPREF1078_RS08900 0.33 +0.4 373,329 - HMPREF1078_RS08900 0.39 -0.2 373,685 - HMPREF1078_RS08900 0.68 -0.1 373,790 - HMPREF1078_RS08900 0.77 +0.3 373,806 + HMPREF1078_RS08900 0.78 -0.6 373,865 + HMPREF1078_RS08900 0.83 -0.6 373,865 + HMPREF1078_RS08900 0.83 -0.1 373,866 - HMPREF1078_RS08900 0.83 +0.2 373,906 + HMPREF1078_RS08900 0.86 -1.9 374,076 + -0.9 374,185 + HMPREF1078_RS08905 0.26 +0.7 374,185 + HMPREF1078_RS08905 0.26 +0.7 374,300 + HMPREF1078_RS08905 0.58 +1.1 374,346 - HMPREF1078_RS08905 0.71 -1.9 374,346 - HMPREF1078_RS08905 0.71 +0.1 374,411 + HMPREF1078_RS08905 0.88 -0.2 374,412 - HMPREF1078_RS08905 0.89 +0.2 374,412 - HMPREF1078_RS08905 0.89 +0.5 374,412 - HMPREF1078_RS08905 0.89 -0.2 374,424 + -1.3 374,425 - +0.5 374,699 + HMPREF1078_RS08910 0.55 -0.4 374,836 - +0.6 374,858 + -0.5 374,858 + -0.6 374,858 + -0.1 374,883 + +2.4 374,934 + HMPREF1078_RS08915 0.22 -3.0 375,150 - -0.7 375,153 - +0.4 375,153 - +1.0 375,214 - -1.2 375,286 - -0.5 375,299 - -0.2 375,299 - +1.0 375,299 - +0.0 375,438 - HMPREF1078_RS08920 0.19 -0.4
Or see this region's nucleotide sequence