Experiment: Yeast Extract 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07520 and HMPREF1078_RS07525 are separated by 57 nucleotides HMPREF1078_RS07525 and HMPREF1078_RS07530 are separated by 713 nucleotides
HMPREF1078_RS07520: HMPREF1078_RS07520 - bifunctional aspartate transaminase/aspartate 4-decarboxylase, at 34,095 to 35,735
_RS07520
HMPREF1078_RS07525: HMPREF1078_RS07525 - aspartate-alanine antiporter, at 35,793 to 37,493
_RS07525
HMPREF1078_RS07530: HMPREF1078_RS07530 - glycyl-radical enzyme activating protein, at 38,207 to 39,112
_RS07530
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2 at 34.820 kb on - strand, within HMPREF1078_RS07520 at 34.828 kb on + strand, within HMPREF1078_RS07520 at 34.877 kb on + strand, within HMPREF1078_RS07520 at 34.878 kb on - strand, within HMPREF1078_RS07520 at 34.881 kb on + strand, within HMPREF1078_RS07520 at 35.006 kb on + strand, within HMPREF1078_RS07520 at 35.007 kb on - strand, within HMPREF1078_RS07520 at 35.063 kb on - strand, within HMPREF1078_RS07520 at 35.085 kb on + strand, within HMPREF1078_RS07520 at 35.086 kb on - strand, within HMPREF1078_RS07520 at 35.086 kb on - strand, within HMPREF1078_RS07520 at 35.088 kb on - strand, within HMPREF1078_RS07520 at 35.088 kb on - strand, within HMPREF1078_RS07520 at 35.088 kb on - strand, within HMPREF1078_RS07520 at 35.088 kb on - strand, within HMPREF1078_RS07520 at 35.088 kb on - strand, within HMPREF1078_RS07520 at 35.089 kb on + strand, within HMPREF1078_RS07520 at 35.132 kb on + strand, within HMPREF1078_RS07520 at 35.166 kb on + strand, within HMPREF1078_RS07520 at 35.171 kb on - strand, within HMPREF1078_RS07520 at 35.171 kb on - strand, within HMPREF1078_RS07520 at 35.257 kb on + strand, within HMPREF1078_RS07520 at 35.271 kb on + strand, within HMPREF1078_RS07520 at 35.280 kb on - strand, within HMPREF1078_RS07520 at 35.390 kb on - strand, within HMPREF1078_RS07520 at 35.390 kb on - strand, within HMPREF1078_RS07520 at 35.463 kb on - strand, within HMPREF1078_RS07520 at 35.621 kb on + strand at 35.622 kb on - strand at 35.633 kb on + strand at 35.659 kb on - strand at 35.666 kb on + strand at 35.711 kb on - strand at 35.711 kb on - strand at 35.748 kb on + strand at 35.748 kb on + strand at 35.749 kb on - strand at 35.758 kb on + strand at 35.759 kb on - strand at 35.769 kb on + strand at 35.770 kb on - strand at 35.770 kb on - strand at 35.866 kb on + strand at 35.867 kb on - strand at 35.946 kb on - strand at 35.957 kb on + strand at 35.983 kb on + strand, within HMPREF1078_RS07525 at 35.983 kb on + strand, within HMPREF1078_RS07525 at 35.983 kb on + strand, within HMPREF1078_RS07525 at 36.120 kb on - strand, within HMPREF1078_RS07525 at 36.324 kb on - strand, within HMPREF1078_RS07525 at 36.353 kb on - strand, within HMPREF1078_RS07525 at 36.357 kb on + strand, within HMPREF1078_RS07525 at 36.358 kb on - strand, within HMPREF1078_RS07525 at 36.358 kb on - strand, within HMPREF1078_RS07525 at 36.362 kb on + strand, within HMPREF1078_RS07525 at 36.495 kb on - strand, within HMPREF1078_RS07525 at 36.495 kb on - strand, within HMPREF1078_RS07525 at 36.535 kb on + strand, within HMPREF1078_RS07525 at 36.536 kb on - strand, within HMPREF1078_RS07525 at 36.601 kb on - strand, within HMPREF1078_RS07525 at 36.764 kb on - strand, within HMPREF1078_RS07525 at 36.956 kb on + strand, within HMPREF1078_RS07525 at 37.009 kb on + strand, within HMPREF1078_RS07525 at 37.009 kb on + strand, within HMPREF1078_RS07525 at 37.010 kb on - strand, within HMPREF1078_RS07525 at 37.062 kb on + strand, within HMPREF1078_RS07525 at 37.063 kb on - strand, within HMPREF1078_RS07525 at 37.076 kb on + strand, within HMPREF1078_RS07525 at 37.105 kb on - strand, within HMPREF1078_RS07525 at 37.218 kb on + strand, within HMPREF1078_RS07525 at 37.218 kb on + strand, within HMPREF1078_RS07525 at 37.271 kb on + strand, within HMPREF1078_RS07525 at 37.272 kb on - strand, within HMPREF1078_RS07525 at 37.274 kb on - strand, within HMPREF1078_RS07525 at 37.331 kb on - strand at 37.334 kb on + strand at 37.354 kb on - strand at 37.493 kb on + strand at 37.493 kb on + strand at 37.493 kb on + strand at 37.494 kb on - strand at 37.494 kb on - strand at 37.494 kb on - strand at 37.495 kb on + strand at 37.496 kb on - strand at 37.496 kb on - strand at 37.500 kb on - strand at 37.586 kb on + strand at 37.595 kb on + strand at 37.596 kb on - strand at 37.596 kb on - strand at 37.608 kb on - strand at 37.675 kb on - strand at 37.685 kb on + strand at 37.759 kb on + strand at 37.799 kb on + strand at 37.815 kb on - strand at 37.847 kb on + strand at 37.847 kb on + strand at 37.847 kb on + strand at 38.058 kb on + strand at 38.058 kb on + strand at 38.124 kb on + strand at 38.124 kb on + strand at 38.209 kb on - strand at 38.247 kb on - strand at 38.247 kb on - strand at 38.318 kb on - strand, within HMPREF1078_RS07530 at 38.318 kb on - strand, within HMPREF1078_RS07530 at 38.321 kb on + strand, within HMPREF1078_RS07530 at 38.321 kb on + strand, within HMPREF1078_RS07530 at 38.322 kb on - strand, within HMPREF1078_RS07530 at 38.322 kb on - strand, within HMPREF1078_RS07530
Per-strain Table
Position Strand Gene LocusTag Fraction Yeast Extract 1 x (C) remove 34,820 - HMPREF1078_RS07520 0.44 +0.5 34,828 + HMPREF1078_RS07520 0.45 -0.8 34,877 + HMPREF1078_RS07520 0.48 -0.6 34,878 - HMPREF1078_RS07520 0.48 +0.2 34,881 + HMPREF1078_RS07520 0.48 -0.7 35,006 + HMPREF1078_RS07520 0.56 -0.1 35,007 - HMPREF1078_RS07520 0.56 -0.0 35,063 - HMPREF1078_RS07520 0.59 +0.3 35,085 + HMPREF1078_RS07520 0.60 +0.0 35,086 - HMPREF1078_RS07520 0.60 -1.8 35,086 - HMPREF1078_RS07520 0.60 -1.4 35,088 - HMPREF1078_RS07520 0.61 -0.1 35,088 - HMPREF1078_RS07520 0.61 -2.7 35,088 - HMPREF1078_RS07520 0.61 -0.7 35,088 - HMPREF1078_RS07520 0.61 +0.2 35,088 - HMPREF1078_RS07520 0.61 +0.5 35,089 + HMPREF1078_RS07520 0.61 -1.4 35,132 + HMPREF1078_RS07520 0.63 +0.3 35,166 + HMPREF1078_RS07520 0.65 -0.5 35,171 - HMPREF1078_RS07520 0.66 -1.6 35,171 - HMPREF1078_RS07520 0.66 +1.6 35,257 + HMPREF1078_RS07520 0.71 +0.5 35,271 + HMPREF1078_RS07520 0.72 -0.4 35,280 - HMPREF1078_RS07520 0.72 -1.9 35,390 - HMPREF1078_RS07520 0.79 -0.4 35,390 - HMPREF1078_RS07520 0.79 +0.3 35,463 - HMPREF1078_RS07520 0.83 -0.4 35,621 + +1.4 35,622 - -1.4 35,633 + -2.2 35,659 - +0.3 35,666 + -0.5 35,711 - -1.3 35,711 - +0.4 35,748 + +1.4 35,748 + -0.8 35,749 - -0.1 35,758 + +0.4 35,759 - +1.3 35,769 + -0.7 35,770 - +1.3 35,770 - +0.1 35,866 + -0.3 35,867 - +0.2 35,946 - -0.3 35,957 + -1.1 35,983 + HMPREF1078_RS07525 0.11 -0.3 35,983 + HMPREF1078_RS07525 0.11 +0.0 35,983 + HMPREF1078_RS07525 0.11 +1.4 36,120 - HMPREF1078_RS07525 0.19 +0.7 36,324 - HMPREF1078_RS07525 0.31 +0.6 36,353 - HMPREF1078_RS07525 0.33 +1.0 36,357 + HMPREF1078_RS07525 0.33 -0.2 36,358 - HMPREF1078_RS07525 0.33 -1.0 36,358 - HMPREF1078_RS07525 0.33 +0.1 36,362 + HMPREF1078_RS07525 0.33 -0.8 36,495 - HMPREF1078_RS07525 0.41 +1.8 36,495 - HMPREF1078_RS07525 0.41 -0.3 36,535 + HMPREF1078_RS07525 0.44 +0.6 36,536 - HMPREF1078_RS07525 0.44 +1.0 36,601 - HMPREF1078_RS07525 0.48 +1.5 36,764 - HMPREF1078_RS07525 0.57 -1.2 36,956 + HMPREF1078_RS07525 0.68 -0.4 37,009 + HMPREF1078_RS07525 0.71 +1.0 37,009 + HMPREF1078_RS07525 0.71 +1.3 37,010 - HMPREF1078_RS07525 0.72 +0.3 37,062 + HMPREF1078_RS07525 0.75 +1.7 37,063 - HMPREF1078_RS07525 0.75 +1.5 37,076 + HMPREF1078_RS07525 0.75 -1.0 37,105 - HMPREF1078_RS07525 0.77 -0.8 37,218 + HMPREF1078_RS07525 0.84 +0.0 37,218 + HMPREF1078_RS07525 0.84 -0.1 37,271 + HMPREF1078_RS07525 0.87 -0.4 37,272 - HMPREF1078_RS07525 0.87 +0.6 37,274 - HMPREF1078_RS07525 0.87 -0.6 37,331 - +0.4 37,334 + -0.5 37,354 - +1.6 37,493 + -0.6 37,493 + -1.6 37,493 + -2.0 37,494 - +0.4 37,494 - -0.7 37,494 - +0.3 37,495 + -0.4 37,496 - +0.7 37,496 - +0.9 37,500 - -0.7 37,586 + +0.3 37,595 + -0.3 37,596 - +1.5 37,596 - +0.8 37,608 - -1.3 37,675 - -0.8 37,685 + +0.6 37,759 + -0.3 37,799 + +2.0 37,815 - +0.5 37,847 + -0.7 37,847 + -0.6 37,847 + +0.4 38,058 + +0.6 38,058 + +0.7 38,124 + -0.5 38,124 + +0.1 38,209 - +0.4 38,247 - -1.4 38,247 - -0.9 38,318 - HMPREF1078_RS07530 0.12 +0.1 38,318 - HMPREF1078_RS07530 0.12 -0.2 38,321 + HMPREF1078_RS07530 0.13 +1.3 38,321 + HMPREF1078_RS07530 0.13 +0.2 38,322 - HMPREF1078_RS07530 0.13 -0.1 38,322 - HMPREF1078_RS07530 0.13 +0.0
Or see this region's nucleotide sequence