Experiment: Yeast Extract 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05900 and HMPREF1078_RS05905 are separated by 156 nucleotides HMPREF1078_RS05905 and HMPREF1078_RS05910 are separated by 82 nucleotides
HMPREF1078_RS05900: HMPREF1078_RS05900 - altronate dehydratase family protein, at 511,011 to 512,498
_RS05900
HMPREF1078_RS05905: HMPREF1078_RS05905 - Na/Pi cotransporter family protein, at 512,655 to 514,343
_RS05905
HMPREF1078_RS05910: HMPREF1078_RS05910 - nucleoside kinase, at 514,426 to 516,093
_RS05910
Position (kb) 512
513
514
515 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 511.727 kb on + strand, within HMPREF1078_RS05900 at 511.735 kb on - strand, within HMPREF1078_RS05900 at 511.789 kb on + strand, within HMPREF1078_RS05900 at 512.008 kb on + strand, within HMPREF1078_RS05900 at 512.051 kb on + strand, within HMPREF1078_RS05900 at 512.063 kb on + strand, within HMPREF1078_RS05900 at 512.064 kb on - strand, within HMPREF1078_RS05900 at 512.133 kb on - strand, within HMPREF1078_RS05900 at 512.133 kb on - strand, within HMPREF1078_RS05900 at 512.133 kb on - strand, within HMPREF1078_RS05900 at 512.173 kb on + strand, within HMPREF1078_RS05900 at 512.208 kb on - strand, within HMPREF1078_RS05900 at 512.246 kb on + strand, within HMPREF1078_RS05900 at 512.314 kb on + strand, within HMPREF1078_RS05900 at 512.315 kb on - strand, within HMPREF1078_RS05900 at 512.315 kb on - strand, within HMPREF1078_RS05900 at 512.510 kb on - strand at 512.524 kb on - strand at 512.607 kb on + strand at 512.612 kb on + strand at 512.613 kb on - strand at 512.614 kb on + strand at 512.615 kb on - strand at 512.654 kb on - strand at 512.682 kb on + strand at 512.685 kb on + strand at 512.694 kb on + strand at 512.694 kb on + strand at 512.694 kb on + strand at 512.695 kb on - strand at 512.698 kb on + strand at 512.699 kb on - strand at 512.737 kb on + strand at 512.737 kb on + strand at 512.738 kb on - strand at 512.738 kb on - strand at 512.740 kb on + strand at 512.762 kb on - strand at 512.839 kb on + strand, within HMPREF1078_RS05905 at 512.839 kb on + strand, within HMPREF1078_RS05905 at 512.840 kb on - strand, within HMPREF1078_RS05905 at 512.840 kb on - strand, within HMPREF1078_RS05905 at 512.840 kb on - strand, within HMPREF1078_RS05905 at 512.840 kb on - strand, within HMPREF1078_RS05905 at 512.840 kb on - strand, within HMPREF1078_RS05905 at 512.862 kb on + strand, within HMPREF1078_RS05905 at 512.883 kb on + strand, within HMPREF1078_RS05905 at 512.929 kb on - strand, within HMPREF1078_RS05905 at 512.961 kb on + strand, within HMPREF1078_RS05905 at 513.005 kb on + strand, within HMPREF1078_RS05905 at 513.224 kb on + strand, within HMPREF1078_RS05905 at 513.234 kb on - strand, within HMPREF1078_RS05905 at 513.321 kb on - strand, within HMPREF1078_RS05905 at 513.321 kb on - strand, within HMPREF1078_RS05905 at 513.383 kb on - strand, within HMPREF1078_RS05905 at 513.388 kb on - strand, within HMPREF1078_RS05905 at 513.465 kb on + strand, within HMPREF1078_RS05905 at 513.570 kb on - strand, within HMPREF1078_RS05905 at 513.570 kb on - strand, within HMPREF1078_RS05905 at 513.573 kb on - strand, within HMPREF1078_RS05905 at 513.642 kb on - strand, within HMPREF1078_RS05905 at 513.717 kb on - strand, within HMPREF1078_RS05905 at 514.140 kb on - strand, within HMPREF1078_RS05905 at 514.308 kb on + strand at 514.308 kb on + strand at 514.310 kb on + strand at 514.367 kb on - strand at 514.367 kb on - strand at 514.367 kb on - strand at 514.367 kb on - strand at 514.367 kb on - strand at 514.422 kb on + strand at 514.422 kb on + strand at 514.423 kb on - strand at 514.423 kb on - strand at 514.464 kb on + strand at 514.464 kb on + strand at 514.464 kb on + strand at 514.465 kb on - strand at 514.465 kb on - strand at 514.508 kb on - strand at 514.557 kb on - strand at 514.557 kb on - strand at 514.564 kb on - strand at 514.564 kb on - strand at 514.579 kb on - strand at 514.612 kb on + strand, within HMPREF1078_RS05910 at 514.613 kb on - strand, within HMPREF1078_RS05910 at 514.613 kb on - strand, within HMPREF1078_RS05910 at 514.613 kb on - strand, within HMPREF1078_RS05910 at 514.613 kb on - strand, within HMPREF1078_RS05910 at 514.648 kb on + strand, within HMPREF1078_RS05910 at 514.648 kb on + strand, within HMPREF1078_RS05910 at 514.648 kb on + strand, within HMPREF1078_RS05910 at 514.648 kb on + strand, within HMPREF1078_RS05910 at 514.648 kb on + strand, within HMPREF1078_RS05910 at 514.649 kb on - strand, within HMPREF1078_RS05910 at 514.668 kb on + strand, within HMPREF1078_RS05910 at 514.742 kb on - strand, within HMPREF1078_RS05910 at 514.745 kb on - strand, within HMPREF1078_RS05910 at 514.772 kb on + strand, within HMPREF1078_RS05910 at 514.937 kb on - strand, within HMPREF1078_RS05910 at 514.938 kb on + strand, within HMPREF1078_RS05910 at 514.938 kb on + strand, within HMPREF1078_RS05910 at 515.006 kb on - strand, within HMPREF1078_RS05910 at 515.107 kb on - strand, within HMPREF1078_RS05910 at 515.123 kb on - strand, within HMPREF1078_RS05910
Per-strain Table
Position Strand Gene LocusTag Fraction Yeast Extract 1 x (C) remove 511,727 + HMPREF1078_RS05900 0.48 -1.5 511,735 - HMPREF1078_RS05900 0.49 -0.1 511,789 + HMPREF1078_RS05900 0.52 -0.6 512,008 + HMPREF1078_RS05900 0.67 +0.7 512,051 + HMPREF1078_RS05900 0.70 -0.1 512,063 + HMPREF1078_RS05900 0.71 -0.3 512,064 - HMPREF1078_RS05900 0.71 -0.2 512,133 - HMPREF1078_RS05900 0.75 +0.2 512,133 - HMPREF1078_RS05900 0.75 +0.4 512,133 - HMPREF1078_RS05900 0.75 -0.1 512,173 + HMPREF1078_RS05900 0.78 +0.1 512,208 - HMPREF1078_RS05900 0.80 -0.5 512,246 + HMPREF1078_RS05900 0.83 +0.0 512,314 + HMPREF1078_RS05900 0.88 -1.5 512,315 - HMPREF1078_RS05900 0.88 +0.7 512,315 - HMPREF1078_RS05900 0.88 +0.9 512,510 - -1.1 512,524 - -0.1 512,607 + -1.1 512,612 + -0.2 512,613 - +0.6 512,614 + +0.4 512,615 - +0.9 512,654 - -1.1 512,682 + -0.5 512,685 + -0.6 512,694 + +0.1 512,694 + +1.0 512,694 + +1.2 512,695 - +0.3 512,698 + -0.7 512,699 - -0.5 512,737 + +0.0 512,737 + +0.3 512,738 - -1.2 512,738 - -1.8 512,740 + -0.1 512,762 - -0.5 512,839 + HMPREF1078_RS05905 0.11 +0.2 512,839 + HMPREF1078_RS05905 0.11 +0.9 512,840 - HMPREF1078_RS05905 0.11 +0.2 512,840 - HMPREF1078_RS05905 0.11 +1.8 512,840 - HMPREF1078_RS05905 0.11 -0.3 512,840 - HMPREF1078_RS05905 0.11 -0.9 512,840 - HMPREF1078_RS05905 0.11 +1.1 512,862 + HMPREF1078_RS05905 0.12 +0.4 512,883 + HMPREF1078_RS05905 0.13 +2.6 512,929 - HMPREF1078_RS05905 0.16 -1.4 512,961 + HMPREF1078_RS05905 0.18 +0.4 513,005 + HMPREF1078_RS05905 0.21 +0.7 513,224 + HMPREF1078_RS05905 0.34 -0.6 513,234 - HMPREF1078_RS05905 0.34 +1.9 513,321 - HMPREF1078_RS05905 0.39 -1.2 513,321 - HMPREF1078_RS05905 0.39 -1.4 513,383 - HMPREF1078_RS05905 0.43 +0.9 513,388 - HMPREF1078_RS05905 0.43 -0.2 513,465 + HMPREF1078_RS05905 0.48 +0.3 513,570 - HMPREF1078_RS05905 0.54 +1.1 513,570 - HMPREF1078_RS05905 0.54 -0.6 513,573 - HMPREF1078_RS05905 0.54 -0.2 513,642 - HMPREF1078_RS05905 0.58 +0.6 513,717 - HMPREF1078_RS05905 0.63 +2.0 514,140 - HMPREF1078_RS05905 0.88 +2.7 514,308 + +0.1 514,308 + +1.1 514,310 + +0.4 514,367 - -1.4 514,367 - +0.4 514,367 - -0.2 514,367 - -0.6 514,367 - +0.4 514,422 + -0.2 514,422 + +0.1 514,423 - +0.0 514,423 - -1.1 514,464 + -0.1 514,464 + +0.1 514,464 + +0.3 514,465 - -0.3 514,465 - -0.6 514,508 - +0.2 514,557 - +1.6 514,557 - +1.1 514,564 - -0.4 514,564 - +0.1 514,579 - +0.2 514,612 + HMPREF1078_RS05910 0.11 -0.2 514,613 - HMPREF1078_RS05910 0.11 -0.8 514,613 - HMPREF1078_RS05910 0.11 +1.0 514,613 - HMPREF1078_RS05910 0.11 +0.1 514,613 - HMPREF1078_RS05910 0.11 -0.3 514,648 + HMPREF1078_RS05910 0.13 +1.1 514,648 + HMPREF1078_RS05910 0.13 +0.4 514,648 + HMPREF1078_RS05910 0.13 +0.0 514,648 + HMPREF1078_RS05910 0.13 -0.3 514,648 + HMPREF1078_RS05910 0.13 +0.3 514,649 - HMPREF1078_RS05910 0.13 -0.4 514,668 + HMPREF1078_RS05910 0.15 -0.9 514,742 - HMPREF1078_RS05910 0.19 +0.7 514,745 - HMPREF1078_RS05910 0.19 +0.7 514,772 + HMPREF1078_RS05910 0.21 -0.7 514,937 - HMPREF1078_RS05910 0.31 +1.1 514,938 + HMPREF1078_RS05910 0.31 -3.4 514,938 + HMPREF1078_RS05910 0.31 +0.1 515,006 - HMPREF1078_RS05910 0.35 -0.7 515,107 - HMPREF1078_RS05910 0.41 +0.0 515,123 - HMPREF1078_RS05910 0.42 -0.9
Or see this region's nucleotide sequence