Experiment: Yeast Extract 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01605 and HMPREF1078_RS01610 are separated by 325 nucleotides HMPREF1078_RS01610 and HMPREF1078_RS01615 overlap by 4 nucleotides HMPREF1078_RS01615 and HMPREF1078_RS01620 overlap by 4 nucleotides
HMPREF1078_RS01605: HMPREF1078_RS01605 - hypothetical protein, at 406,572 to 407,039
_RS01605
HMPREF1078_RS01610: HMPREF1078_RS01610 - hypothetical protein, at 407,365 to 407,871
_RS01610
HMPREF1078_RS01615: HMPREF1078_RS01615 - DnaB-like helicase C-terminal domain-containing protein, at 407,868 to 409,259
_RS01615
HMPREF1078_RS01620: HMPREF1078_RS01620 - CHC2 zinc finger domain-containing protein, at 409,256 to 410,467
_RS01620
Position (kb) 407
408
409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 407.052 kb on + strand at 407.055 kb on + strand at 407.055 kb on + strand at 407.055 kb on + strand at 407.056 kb on - strand at 407.056 kb on - strand at 407.056 kb on - strand at 407.057 kb on + strand at 407.057 kb on + strand at 407.057 kb on + strand at 407.057 kb on + strand at 407.057 kb on + strand at 407.058 kb on - strand at 407.194 kb on + strand at 407.200 kb on + strand at 407.204 kb on + strand at 407.204 kb on + strand at 407.204 kb on + strand at 407.213 kb on + strand at 407.213 kb on + strand at 407.214 kb on - strand at 407.225 kb on - strand at 407.227 kb on + strand at 407.228 kb on - strand at 407.228 kb on - strand at 407.229 kb on + strand at 407.229 kb on + strand at 407.229 kb on + strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.232 kb on - strand at 407.269 kb on + strand at 407.296 kb on + strand at 407.332 kb on + strand at 407.333 kb on - strand at 407.342 kb on - strand at 407.349 kb on - strand at 407.361 kb on + strand at 407.361 kb on + strand at 407.362 kb on - strand at 407.362 kb on - strand at 407.362 kb on - strand at 407.378 kb on + strand at 407.416 kb on + strand, within HMPREF1078_RS01610 at 407.416 kb on + strand, within HMPREF1078_RS01610 at 407.416 kb on + strand, within HMPREF1078_RS01610 at 407.416 kb on + strand, within HMPREF1078_RS01610 at 407.416 kb on + strand, within HMPREF1078_RS01610 at 407.416 kb on + strand, within HMPREF1078_RS01610 at 407.416 kb on + strand, within HMPREF1078_RS01610 at 407.416 kb on + strand, within HMPREF1078_RS01610 at 407.416 kb on + strand, within HMPREF1078_RS01610 at 407.416 kb on + strand, within HMPREF1078_RS01610 at 407.417 kb on - strand, within HMPREF1078_RS01610 at 407.417 kb on - strand, within HMPREF1078_RS01610 at 407.417 kb on - strand, within HMPREF1078_RS01610 at 407.417 kb on - strand, within HMPREF1078_RS01610 at 407.417 kb on - strand, within HMPREF1078_RS01610 at 407.450 kb on + strand, within HMPREF1078_RS01610 at 407.451 kb on - strand, within HMPREF1078_RS01610 at 407.492 kb on - strand, within HMPREF1078_RS01610 at 407.492 kb on - strand, within HMPREF1078_RS01610 at 407.492 kb on - strand, within HMPREF1078_RS01610 at 407.551 kb on + strand, within HMPREF1078_RS01610 at 407.552 kb on - strand, within HMPREF1078_RS01610 at 407.555 kb on - strand, within HMPREF1078_RS01610 at 407.555 kb on - strand, within HMPREF1078_RS01610 at 407.555 kb on - strand, within HMPREF1078_RS01610 at 407.619 kb on + strand, within HMPREF1078_RS01610 at 408.150 kb on + strand, within HMPREF1078_RS01615 at 408.150 kb on + strand, within HMPREF1078_RS01615 at 408.150 kb on + strand, within HMPREF1078_RS01615 at 408.189 kb on + strand, within HMPREF1078_RS01615 at 408.213 kb on + strand, within HMPREF1078_RS01615 at 408.213 kb on + strand, within HMPREF1078_RS01615 at 408.214 kb on - strand, within HMPREF1078_RS01615 at 408.214 kb on - strand, within HMPREF1078_RS01615 at 408.215 kb on + strand, within HMPREF1078_RS01615 at 408.215 kb on + strand, within HMPREF1078_RS01615 at 408.359 kb on + strand, within HMPREF1078_RS01615 at 408.359 kb on + strand, within HMPREF1078_RS01615 at 408.359 kb on + strand, within HMPREF1078_RS01615 at 408.750 kb on + strand, within HMPREF1078_RS01615 at 408.752 kb on + strand, within HMPREF1078_RS01615 at 408.752 kb on + strand, within HMPREF1078_RS01615 at 408.753 kb on - strand, within HMPREF1078_RS01615 at 408.753 kb on - strand, within HMPREF1078_RS01615 at 408.753 kb on - strand, within HMPREF1078_RS01615 at 408.753 kb on - strand, within HMPREF1078_RS01615 at 408.779 kb on - strand, within HMPREF1078_RS01615 at 408.838 kb on - strand, within HMPREF1078_RS01615 at 408.838 kb on - strand, within HMPREF1078_RS01615 at 408.904 kb on + strand, within HMPREF1078_RS01615 at 408.999 kb on + strand, within HMPREF1078_RS01615 at 409.000 kb on - strand, within HMPREF1078_RS01615 at 409.071 kb on + strand, within HMPREF1078_RS01615 at 409.071 kb on + strand, within HMPREF1078_RS01615 at 409.118 kb on + strand, within HMPREF1078_RS01615 at 409.118 kb on + strand, within HMPREF1078_RS01615 at 409.143 kb on + strand at 409.144 kb on - strand at 409.144 kb on - strand at 409.221 kb on + strand at 409.221 kb on + strand at 409.223 kb on + strand at 409.223 kb on + strand at 409.223 kb on + strand at 409.224 kb on - strand at 409.224 kb on - strand at 409.224 kb on - strand at 409.224 kb on - strand at 409.225 kb on + strand at 409.225 kb on + strand at 409.225 kb on + strand at 409.225 kb on + strand at 409.225 kb on + strand at 409.226 kb on - strand at 409.226 kb on - strand at 409.273 kb on - strand at 409.552 kb on + strand, within HMPREF1078_RS01620 at 409.714 kb on + strand, within HMPREF1078_RS01620 at 409.875 kb on - strand, within HMPREF1078_RS01620 at 409.931 kb on + strand, within HMPREF1078_RS01620 at 409.931 kb on + strand, within HMPREF1078_RS01620 at 409.931 kb on + strand, within HMPREF1078_RS01620 at 409.931 kb on + strand, within HMPREF1078_RS01620 at 409.932 kb on - strand, within HMPREF1078_RS01620 at 409.987 kb on + strand, within HMPREF1078_RS01620 at 409.987 kb on + strand, within HMPREF1078_RS01620 at 409.987 kb on + strand, within HMPREF1078_RS01620 at 409.987 kb on + strand, within HMPREF1078_RS01620 at 409.988 kb on - strand, within HMPREF1078_RS01620 at 409.988 kb on - strand, within HMPREF1078_RS01620 at 409.988 kb on - strand, within HMPREF1078_RS01620 at 410.026 kb on + strand, within HMPREF1078_RS01620 at 410.027 kb on - strand, within HMPREF1078_RS01620 at 410.086 kb on + strand, within HMPREF1078_RS01620 at 410.086 kb on + strand, within HMPREF1078_RS01620 at 410.086 kb on + strand, within HMPREF1078_RS01620 at 410.086 kb on + strand, within HMPREF1078_RS01620 at 410.087 kb on - strand, within HMPREF1078_RS01620 at 410.087 kb on - strand, within HMPREF1078_RS01620 at 410.087 kb on - strand, within HMPREF1078_RS01620 at 410.087 kb on - strand, within HMPREF1078_RS01620
Per-strain Table
Position Strand Gene LocusTag Fraction Yeast Extract 1 x (C) remove 407,052 + -0.9 407,055 + +0.2 407,055 + -0.7 407,055 + +0.1 407,056 - -1.6 407,056 - +1.0 407,056 - -1.9 407,057 + -3.7 407,057 + -0.1 407,057 + +0.2 407,057 + +0.5 407,057 + -0.1 407,058 - -1.1 407,194 + -1.1 407,200 + +1.8 407,204 + -2.7 407,204 + +1.1 407,204 + -0.3 407,213 + +0.8 407,213 + +0.1 407,214 - +0.5 407,225 - -0.1 407,227 + +0.8 407,228 - +0.4 407,228 - +1.0 407,229 + +0.1 407,229 + +0.1 407,229 + +2.4 407,230 - +0.1 407,230 - -0.4 407,232 - +1.3 407,269 + -0.4 407,296 + -1.2 407,332 + -0.6 407,333 - +2.3 407,342 - -1.8 407,349 - +1.6 407,361 + -0.6 407,361 + -0.1 407,362 - +1.2 407,362 - -0.0 407,362 - +0.2 407,378 + +1.4 407,416 + HMPREF1078_RS01610 0.10 +0.3 407,416 + HMPREF1078_RS01610 0.10 -0.9 407,416 + HMPREF1078_RS01610 0.10 -3.7 407,416 + HMPREF1078_RS01610 0.10 -0.8 407,416 + HMPREF1078_RS01610 0.10 -0.4 407,416 + HMPREF1078_RS01610 0.10 +1.2 407,416 + HMPREF1078_RS01610 0.10 -0.6 407,416 + HMPREF1078_RS01610 0.10 +0.7 407,416 + HMPREF1078_RS01610 0.10 -1.8 407,416 + HMPREF1078_RS01610 0.10 -1.2 407,417 - HMPREF1078_RS01610 0.10 -0.0 407,417 - HMPREF1078_RS01610 0.10 +0.2 407,417 - HMPREF1078_RS01610 0.10 -0.1 407,417 - HMPREF1078_RS01610 0.10 +1.4 407,417 - HMPREF1078_RS01610 0.10 -1.5 407,450 + HMPREF1078_RS01610 0.17 +0.2 407,451 - HMPREF1078_RS01610 0.17 -0.9 407,492 - HMPREF1078_RS01610 0.25 +0.0 407,492 - HMPREF1078_RS01610 0.25 -0.5 407,492 - HMPREF1078_RS01610 0.25 -1.7 407,551 + HMPREF1078_RS01610 0.37 -0.6 407,552 - HMPREF1078_RS01610 0.37 +1.0 407,555 - HMPREF1078_RS01610 0.37 -0.4 407,555 - HMPREF1078_RS01610 0.37 +0.4 407,555 - HMPREF1078_RS01610 0.37 -0.2 407,619 + HMPREF1078_RS01610 0.50 -1.1 408,150 + HMPREF1078_RS01615 0.20 -1.4 408,150 + HMPREF1078_RS01615 0.20 -0.7 408,150 + HMPREF1078_RS01615 0.20 +0.4 408,189 + HMPREF1078_RS01615 0.23 +0.7 408,213 + HMPREF1078_RS01615 0.25 -0.6 408,213 + HMPREF1078_RS01615 0.25 +0.7 408,214 - HMPREF1078_RS01615 0.25 +0.2 408,214 - HMPREF1078_RS01615 0.25 -0.8 408,215 + HMPREF1078_RS01615 0.25 +1.0 408,215 + HMPREF1078_RS01615 0.25 +0.0 408,359 + HMPREF1078_RS01615 0.35 +0.9 408,359 + HMPREF1078_RS01615 0.35 +1.0 408,359 + HMPREF1078_RS01615 0.35 +0.7 408,750 + HMPREF1078_RS01615 0.63 +0.8 408,752 + HMPREF1078_RS01615 0.64 -1.9 408,752 + HMPREF1078_RS01615 0.64 -2.1 408,753 - HMPREF1078_RS01615 0.64 -0.7 408,753 - HMPREF1078_RS01615 0.64 -0.1 408,753 - HMPREF1078_RS01615 0.64 +0.8 408,753 - HMPREF1078_RS01615 0.64 +0.5 408,779 - HMPREF1078_RS01615 0.65 +0.1 408,838 - HMPREF1078_RS01615 0.70 +1.0 408,838 - HMPREF1078_RS01615 0.70 +0.0 408,904 + HMPREF1078_RS01615 0.74 -0.4 408,999 + HMPREF1078_RS01615 0.81 +1.1 409,000 - HMPREF1078_RS01615 0.81 +0.8 409,071 + HMPREF1078_RS01615 0.86 -0.6 409,071 + HMPREF1078_RS01615 0.86 +0.7 409,118 + HMPREF1078_RS01615 0.90 -0.7 409,118 + HMPREF1078_RS01615 0.90 -0.1 409,143 + +0.1 409,144 - +0.4 409,144 - +0.2 409,221 + -0.3 409,221 + +0.4 409,223 + +0.2 409,223 + +1.4 409,223 + -1.0 409,224 - +0.0 409,224 - +1.2 409,224 - -2.0 409,224 - -1.2 409,225 + -1.4 409,225 + -0.7 409,225 + -0.5 409,225 + -1.3 409,225 + -2.5 409,226 - +0.9 409,226 - +1.0 409,273 - -0.2 409,552 + HMPREF1078_RS01620 0.24 -0.6 409,714 + HMPREF1078_RS01620 0.38 +0.2 409,875 - HMPREF1078_RS01620 0.51 -2.0 409,931 + HMPREF1078_RS01620 0.56 +0.1 409,931 + HMPREF1078_RS01620 0.56 -0.2 409,931 + HMPREF1078_RS01620 0.56 +0.8 409,931 + HMPREF1078_RS01620 0.56 +0.4 409,932 - HMPREF1078_RS01620 0.56 -1.8 409,987 + HMPREF1078_RS01620 0.60 +0.0 409,987 + HMPREF1078_RS01620 0.60 -0.8 409,987 + HMPREF1078_RS01620 0.60 -0.1 409,987 + HMPREF1078_RS01620 0.60 -1.4 409,988 - HMPREF1078_RS01620 0.60 -0.5 409,988 - HMPREF1078_RS01620 0.60 -0.9 409,988 - HMPREF1078_RS01620 0.60 -1.2 410,026 + HMPREF1078_RS01620 0.64 +0.1 410,027 - HMPREF1078_RS01620 0.64 -1.4 410,086 + HMPREF1078_RS01620 0.68 +0.1 410,086 + HMPREF1078_RS01620 0.68 +0.1 410,086 + HMPREF1078_RS01620 0.68 -0.7 410,086 + HMPREF1078_RS01620 0.68 +0.3 410,087 - HMPREF1078_RS01620 0.69 +0.4 410,087 - HMPREF1078_RS01620 0.69 -0.2 410,087 - HMPREF1078_RS01620 0.69 +0.0 410,087 - HMPREF1078_RS01620 0.69 -1.2
Or see this region's nucleotide sequence