Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS12215

Experiment: Columbia 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS12210 and HMPREF1078_RS12215 are separated by 9 nucleotidesHMPREF1078_RS12215 and HMPREF1078_RS12220 are separated by 21 nucleotides HMPREF1078_RS12210: HMPREF1078_RS12210 - RagB/SusD family nutrient uptake outer membrane protein, at 423,735 to 425,189 _RS12210 HMPREF1078_RS12215: HMPREF1078_RS12215 - dihydrodipicolinate synthase family protein, at 425,199 to 426,137 _RS12215 HMPREF1078_RS12220: HMPREF1078_RS12220 - sialidase family protein, at 426,159 to 427,286 _RS12220 Position (kb) 425 426 427Strain fitness (log2 ratio) -2 -1 0 1at 424.280 kb on - strand, within HMPREF1078_RS12210at 424.304 kb on - strand, within HMPREF1078_RS12210at 424.316 kb on + strand, within HMPREF1078_RS12210at 424.316 kb on + strand, within HMPREF1078_RS12210at 424.316 kb on + strand, within HMPREF1078_RS12210at 424.317 kb on - strand, within HMPREF1078_RS12210at 424.324 kb on + strand, within HMPREF1078_RS12210at 424.358 kb on + strand, within HMPREF1078_RS12210at 424.362 kb on - strand, within HMPREF1078_RS12210at 424.362 kb on - strand, within HMPREF1078_RS12210at 424.362 kb on - strand, within HMPREF1078_RS12210at 424.362 kb on - strand, within HMPREF1078_RS12210at 424.377 kb on + strand, within HMPREF1078_RS12210at 424.377 kb on + strand, within HMPREF1078_RS12210at 424.392 kb on + strand, within HMPREF1078_RS12210at 424.392 kb on + strand, within HMPREF1078_RS12210at 424.392 kb on + strand, within HMPREF1078_RS12210at 424.392 kb on + strand, within HMPREF1078_RS12210at 424.393 kb on - strand, within HMPREF1078_RS12210at 424.400 kb on - strand, within HMPREF1078_RS12210at 424.513 kb on + strand, within HMPREF1078_RS12210at 424.514 kb on - strand, within HMPREF1078_RS12210at 424.557 kb on + strand, within HMPREF1078_RS12210at 424.558 kb on - strand, within HMPREF1078_RS12210at 424.558 kb on - strand, within HMPREF1078_RS12210at 424.558 kb on - strand, within HMPREF1078_RS12210at 424.558 kb on - strand, within HMPREF1078_RS12210at 424.559 kb on + strand, within HMPREF1078_RS12210at 424.559 kb on + strand, within HMPREF1078_RS12210at 424.560 kb on - strand, within HMPREF1078_RS12210at 424.560 kb on - strand, within HMPREF1078_RS12210at 424.560 kb on - strand, within HMPREF1078_RS12210at 424.560 kb on - strand, within HMPREF1078_RS12210at 424.582 kb on - strand, within HMPREF1078_RS12210at 424.640 kb on + strand, within HMPREF1078_RS12210at 424.663 kb on - strand, within HMPREF1078_RS12210at 424.674 kb on + strand, within HMPREF1078_RS12210at 424.675 kb on - strand, within HMPREF1078_RS12210at 424.720 kb on + strand, within HMPREF1078_RS12210at 424.775 kb on + strand, within HMPREF1078_RS12210at 424.808 kb on + strand, within HMPREF1078_RS12210at 424.808 kb on + strand, within HMPREF1078_RS12210at 424.826 kb on - strand, within HMPREF1078_RS12210at 424.831 kb on + strand, within HMPREF1078_RS12210at 424.831 kb on + strand, within HMPREF1078_RS12210at 424.831 kb on + strand, within HMPREF1078_RS12210at 424.831 kb on + strand, within HMPREF1078_RS12210at 424.831 kb on + strand, within HMPREF1078_RS12210at 424.833 kb on + strand, within HMPREF1078_RS12210at 424.833 kb on + strand, within HMPREF1078_RS12210at 424.856 kb on - strand, within HMPREF1078_RS12210at 424.856 kb on - strand, within HMPREF1078_RS12210at 424.935 kb on + strand, within HMPREF1078_RS12210at 424.936 kb on - strand, within HMPREF1078_RS12210at 424.940 kb on + strand, within HMPREF1078_RS12210at 424.953 kb on + strand, within HMPREF1078_RS12210at 424.997 kb on - strand, within HMPREF1078_RS12210at 425.035 kb on + strand, within HMPREF1078_RS12210at 425.036 kb on - strand, within HMPREF1078_RS12210at 425.066 kb on - strandat 425.066 kb on - strandat 425.066 kb on - strandat 425.119 kb on + strandat 425.119 kb on + strandat 425.120 kb on - strandat 425.147 kb on + strandat 425.164 kb on + strandat 425.164 kb on + strandat 425.164 kb on + strandat 425.165 kb on - strandat 425.165 kb on - strandat 425.198 kb on + strandat 425.198 kb on + strandat 425.199 kb on - strandat 425.199 kb on - strandat 425.199 kb on - strandat 425.199 kb on - strandat 425.199 kb on - strandat 425.199 kb on - strandat 425.216 kb on + strandat 425.216 kb on + strandat 425.276 kb on - strandat 425.280 kb on + strandat 425.303 kb on - strand, within HMPREF1078_RS12215at 425.303 kb on - strand, within HMPREF1078_RS12215at 425.303 kb on - strand, within HMPREF1078_RS12215at 425.306 kb on + strand, within HMPREF1078_RS12215at 425.314 kb on + strand, within HMPREF1078_RS12215at 425.315 kb on - strand, within HMPREF1078_RS12215at 425.315 kb on - strand, within HMPREF1078_RS12215at 425.365 kb on - strand, within HMPREF1078_RS12215at 425.405 kb on - strand, within HMPREF1078_RS12215at 425.473 kb on + strand, within HMPREF1078_RS12215at 425.474 kb on - strand, within HMPREF1078_RS12215at 425.474 kb on - strand, within HMPREF1078_RS12215at 425.480 kb on - strand, within HMPREF1078_RS12215at 425.527 kb on + strand, within HMPREF1078_RS12215at 425.528 kb on - strand, within HMPREF1078_RS12215at 425.528 kb on - strand, within HMPREF1078_RS12215at 425.528 kb on - strand, within HMPREF1078_RS12215at 425.533 kb on + strand, within HMPREF1078_RS12215at 425.675 kb on - strand, within HMPREF1078_RS12215at 425.684 kb on + strand, within HMPREF1078_RS12215at 425.684 kb on + strand, within HMPREF1078_RS12215at 425.684 kb on + strand, within HMPREF1078_RS12215at 425.685 kb on - strand, within HMPREF1078_RS12215at 425.686 kb on + strand, within HMPREF1078_RS12215at 425.686 kb on + strand, within HMPREF1078_RS12215at 425.686 kb on + strand, within HMPREF1078_RS12215at 425.686 kb on + strand, within HMPREF1078_RS12215at 425.686 kb on + strand, within HMPREF1078_RS12215at 425.687 kb on - strand, within HMPREF1078_RS12215at 425.687 kb on - strand, within HMPREF1078_RS12215at 425.687 kb on - strand, within HMPREF1078_RS12215at 425.687 kb on - strand, within HMPREF1078_RS12215at 425.687 kb on - strand, within HMPREF1078_RS12215at 425.687 kb on - strand, within HMPREF1078_RS12215at 425.741 kb on + strand, within HMPREF1078_RS12215at 425.741 kb on + strand, within HMPREF1078_RS12215at 425.898 kb on - strand, within HMPREF1078_RS12215at 425.903 kb on + strand, within HMPREF1078_RS12215at 425.903 kb on + strand, within HMPREF1078_RS12215at 425.903 kb on - strand, within HMPREF1078_RS12215at 425.927 kb on + strand, within HMPREF1078_RS12215at 425.927 kb on + strand, within HMPREF1078_RS12215at 425.927 kb on + strand, within HMPREF1078_RS12215at 425.927 kb on + strand, within HMPREF1078_RS12215at 425.928 kb on - strand, within HMPREF1078_RS12215at 425.928 kb on - strand, within HMPREF1078_RS12215at 425.953 kb on + strand, within HMPREF1078_RS12215at 426.034 kb on + strand, within HMPREF1078_RS12215at 426.034 kb on + strand, within HMPREF1078_RS12215at 426.035 kb on - strand, within HMPREF1078_RS12215at 426.035 kb on - strand, within HMPREF1078_RS12215at 426.079 kb on - strandat 426.079 kb on - strandat 426.105 kb on + strandat 426.106 kb on - strandat 426.110 kb on + strandat 426.111 kb on - strandat 426.153 kb on + strandat 426.167 kb on + strandat 426.175 kb on + strandat 426.175 kb on + strandat 426.175 kb on + strandat 426.176 kb on - strandat 426.230 kb on + strandat 426.246 kb on + strandat 426.246 kb on + strandat 426.247 kb on - strandat 426.247 kb on - strandat 426.250 kb on + strandat 426.268 kb on - strandat 426.402 kb on - strand, within HMPREF1078_RS12220at 426.423 kb on - strand, within HMPREF1078_RS12220at 426.423 kb on - strand, within HMPREF1078_RS12220at 426.423 kb on - strand, within HMPREF1078_RS12220at 426.448 kb on + strand, within HMPREF1078_RS12220at 426.448 kb on + strand, within HMPREF1078_RS12220at 426.449 kb on - strand, within HMPREF1078_RS12220at 426.449 kb on - strand, within HMPREF1078_RS12220at 426.449 kb on - strand, within HMPREF1078_RS12220at 426.472 kb on + strand, within HMPREF1078_RS12220at 426.491 kb on + strand, within HMPREF1078_RS12220at 426.491 kb on + strand, within HMPREF1078_RS12220at 426.492 kb on - strand, within HMPREF1078_RS12220at 426.557 kb on + strand, within HMPREF1078_RS12220at 426.574 kb on + strand, within HMPREF1078_RS12220at 426.694 kb on + strand, within HMPREF1078_RS12220at 426.710 kb on + strand, within HMPREF1078_RS12220at 426.711 kb on - strand, within HMPREF1078_RS12220at 426.725 kb on - strand, within HMPREF1078_RS12220at 426.725 kb on - strand, within HMPREF1078_RS12220at 426.740 kb on + strand, within HMPREF1078_RS12220at 426.741 kb on - strand, within HMPREF1078_RS12220at 426.762 kb on + strand, within HMPREF1078_RS12220at 426.762 kb on + strand, within HMPREF1078_RS12220at 426.877 kb on + strand, within HMPREF1078_RS12220at 426.894 kb on - strand, within HMPREF1078_RS12220at 426.995 kb on + strand, within HMPREF1078_RS12220at 427.020 kb on + strand, within HMPREF1078_RS12220at 427.021 kb on - strand, within HMPREF1078_RS12220at 427.054 kb on + strand, within HMPREF1078_RS12220at 427.134 kb on + strand, within HMPREF1078_RS12220at 427.135 kb on - strand, within HMPREF1078_RS12220

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Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C)
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424,280 - HMPREF1078_RS12210 0.37 +0.3
424,304 - HMPREF1078_RS12210 0.39 +0.1
424,316 + HMPREF1078_RS12210 0.40 -0.4
424,316 + HMPREF1078_RS12210 0.40 +0.1
424,316 + HMPREF1078_RS12210 0.40 -0.6
424,317 - HMPREF1078_RS12210 0.40 -0.4
424,324 + HMPREF1078_RS12210 0.40 -0.3
424,358 + HMPREF1078_RS12210 0.43 -0.3
424,362 - HMPREF1078_RS12210 0.43 +0.6
424,362 - HMPREF1078_RS12210 0.43 +0.9
424,362 - HMPREF1078_RS12210 0.43 -2.1
424,362 - HMPREF1078_RS12210 0.43 +1.1
424,377 + HMPREF1078_RS12210 0.44 -1.2
424,377 + HMPREF1078_RS12210 0.44 +0.5
424,392 + HMPREF1078_RS12210 0.45 -0.2
424,392 + HMPREF1078_RS12210 0.45 +0.5
424,392 + HMPREF1078_RS12210 0.45 -0.4
424,392 + HMPREF1078_RS12210 0.45 -0.6
424,393 - HMPREF1078_RS12210 0.45 -0.2
424,400 - HMPREF1078_RS12210 0.46 +0.2
424,513 + HMPREF1078_RS12210 0.53 -1.3
424,514 - HMPREF1078_RS12210 0.54 -0.2
424,557 + HMPREF1078_RS12210 0.56 -0.3
424,558 - HMPREF1078_RS12210 0.57 -0.3
424,558 - HMPREF1078_RS12210 0.57 +0.3
424,558 - HMPREF1078_RS12210 0.57 -0.0
424,558 - HMPREF1078_RS12210 0.57 -0.1
424,559 + HMPREF1078_RS12210 0.57 +0.0
424,559 + HMPREF1078_RS12210 0.57 -0.0
424,560 - HMPREF1078_RS12210 0.57 -0.6
424,560 - HMPREF1078_RS12210 0.57 -0.8
424,560 - HMPREF1078_RS12210 0.57 +0.0
424,560 - HMPREF1078_RS12210 0.57 +0.2
424,582 - HMPREF1078_RS12210 0.58 -0.6
424,640 + HMPREF1078_RS12210 0.62 +0.3
424,663 - HMPREF1078_RS12210 0.64 +0.3
424,674 + HMPREF1078_RS12210 0.65 -0.3
424,675 - HMPREF1078_RS12210 0.65 -1.0
424,720 + HMPREF1078_RS12210 0.68 -0.7
424,775 + HMPREF1078_RS12210 0.71 +0.3
424,808 + HMPREF1078_RS12210 0.74 -0.2
424,808 + HMPREF1078_RS12210 0.74 -0.2
424,826 - HMPREF1078_RS12210 0.75 -2.2
424,831 + HMPREF1078_RS12210 0.75 +0.2
424,831 + HMPREF1078_RS12210 0.75 -0.4
424,831 + HMPREF1078_RS12210 0.75 +0.0
424,831 + HMPREF1078_RS12210 0.75 -0.9
424,831 + HMPREF1078_RS12210 0.75 +1.5
424,833 + HMPREF1078_RS12210 0.75 -0.5
424,833 + HMPREF1078_RS12210 0.75 -0.3
424,856 - HMPREF1078_RS12210 0.77 +0.1
424,856 - HMPREF1078_RS12210 0.77 +0.6
424,935 + HMPREF1078_RS12210 0.82 +1.4
424,936 - HMPREF1078_RS12210 0.83 +0.8
424,940 + HMPREF1078_RS12210 0.83 -0.4
424,953 + HMPREF1078_RS12210 0.84 +0.6
424,997 - HMPREF1078_RS12210 0.87 -0.3
425,035 + HMPREF1078_RS12210 0.89 -0.5
425,036 - HMPREF1078_RS12210 0.89 -1.0
425,066 - +0.9
425,066 - -0.0
425,066 - +0.5
425,119 + +0.6
425,119 + -0.2
425,120 - -1.7
425,147 + +0.3
425,164 + -0.1
425,164 + -0.5
425,164 + -0.1
425,165 - -2.1
425,165 - +0.3
425,198 + +0.1
425,198 + +0.2
425,199 - +0.0
425,199 - -0.9
425,199 - +1.4
425,199 - -0.3
425,199 - +0.0
425,199 - +0.0
425,216 + +0.1
425,216 + -1.8
425,276 - -0.5
425,280 + -0.2
425,303 - HMPREF1078_RS12215 0.11 -0.0
425,303 - HMPREF1078_RS12215 0.11 -0.4
425,303 - HMPREF1078_RS12215 0.11 -1.4
425,306 + HMPREF1078_RS12215 0.11 -0.6
425,314 + HMPREF1078_RS12215 0.12 -1.0
425,315 - HMPREF1078_RS12215 0.12 -0.5
425,315 - HMPREF1078_RS12215 0.12 -0.9
425,365 - HMPREF1078_RS12215 0.18 +0.1
425,405 - HMPREF1078_RS12215 0.22 -0.3
425,473 + HMPREF1078_RS12215 0.29 +0.6
425,474 - HMPREF1078_RS12215 0.29 -1.7
425,474 - HMPREF1078_RS12215 0.29 -1.1
425,480 - HMPREF1078_RS12215 0.30 -0.5
425,527 + HMPREF1078_RS12215 0.35 -0.2
425,528 - HMPREF1078_RS12215 0.35 +0.1
425,528 - HMPREF1078_RS12215 0.35 -1.9
425,528 - HMPREF1078_RS12215 0.35 -0.7
425,533 + HMPREF1078_RS12215 0.36 -1.3
425,675 - HMPREF1078_RS12215 0.51 -0.9
425,684 + HMPREF1078_RS12215 0.52 -0.3
425,684 + HMPREF1078_RS12215 0.52 +0.6
425,684 + HMPREF1078_RS12215 0.52 +0.3
425,685 - HMPREF1078_RS12215 0.52 +0.0
425,686 + HMPREF1078_RS12215 0.52 +0.0
425,686 + HMPREF1078_RS12215 0.52 +0.4
425,686 + HMPREF1078_RS12215 0.52 -1.4
425,686 + HMPREF1078_RS12215 0.52 -0.6
425,686 + HMPREF1078_RS12215 0.52 +0.3
425,687 - HMPREF1078_RS12215 0.52 +0.6
425,687 - HMPREF1078_RS12215 0.52 -0.8
425,687 - HMPREF1078_RS12215 0.52 +0.3
425,687 - HMPREF1078_RS12215 0.52 +1.0
425,687 - HMPREF1078_RS12215 0.52 +0.2
425,687 - HMPREF1078_RS12215 0.52 -0.2
425,741 + HMPREF1078_RS12215 0.58 -1.3
425,741 + HMPREF1078_RS12215 0.58 -0.3
425,898 - HMPREF1078_RS12215 0.74 -0.5
425,903 + HMPREF1078_RS12215 0.75 +0.3
425,903 + HMPREF1078_RS12215 0.75 +0.8
425,903 - HMPREF1078_RS12215 0.75 -1.5
425,927 + HMPREF1078_RS12215 0.78 +0.0
425,927 + HMPREF1078_RS12215 0.78 -0.2
425,927 + HMPREF1078_RS12215 0.78 +0.2
425,927 + HMPREF1078_RS12215 0.78 -0.5
425,928 - HMPREF1078_RS12215 0.78 -0.4
425,928 - HMPREF1078_RS12215 0.78 +0.2
425,953 + HMPREF1078_RS12215 0.80 +0.2
426,034 + HMPREF1078_RS12215 0.89 +0.6
426,034 + HMPREF1078_RS12215 0.89 +0.7
426,035 - HMPREF1078_RS12215 0.89 +0.9
426,035 - HMPREF1078_RS12215 0.89 -0.2
426,079 - -0.1
426,079 - +0.2
426,105 + -0.7
426,106 - +0.1
426,110 + +0.0
426,111 - +1.2
426,153 + -0.6
426,167 + -0.9
426,175 + -0.2
426,175 + +0.6
426,175 + -0.2
426,176 - +0.6
426,230 + +0.2
426,246 + -0.4
426,246 + -0.8
426,247 - -0.3
426,247 - -0.0
426,250 + +0.8
426,268 - +0.1
426,402 - HMPREF1078_RS12220 0.22 -0.5
426,423 - HMPREF1078_RS12220 0.23 -1.8
426,423 - HMPREF1078_RS12220 0.23 -1.2
426,423 - HMPREF1078_RS12220 0.23 -0.3
426,448 + HMPREF1078_RS12220 0.26 +0.2
426,448 + HMPREF1078_RS12220 0.26 -0.2
426,449 - HMPREF1078_RS12220 0.26 -0.4
426,449 - HMPREF1078_RS12220 0.26 -0.3
426,449 - HMPREF1078_RS12220 0.26 -0.6
426,472 + HMPREF1078_RS12220 0.28 -0.7
426,491 + HMPREF1078_RS12220 0.29 -0.5
426,491 + HMPREF1078_RS12220 0.29 +0.7
426,492 - HMPREF1078_RS12220 0.30 -1.9
426,557 + HMPREF1078_RS12220 0.35 +0.4
426,574 + HMPREF1078_RS12220 0.37 -0.1
426,694 + HMPREF1078_RS12220 0.47 +1.3
426,710 + HMPREF1078_RS12220 0.49 +0.1
426,711 - HMPREF1078_RS12220 0.49 +0.2
426,725 - HMPREF1078_RS12220 0.50 +0.1
426,725 - HMPREF1078_RS12220 0.50 -0.0
426,740 + HMPREF1078_RS12220 0.52 -0.5
426,741 - HMPREF1078_RS12220 0.52 +0.6
426,762 + HMPREF1078_RS12220 0.53 -0.2
426,762 + HMPREF1078_RS12220 0.53 +0.7
426,877 + HMPREF1078_RS12220 0.64 -1.5
426,894 - HMPREF1078_RS12220 0.65 +0.3
426,995 + HMPREF1078_RS12220 0.74 +1.0
427,020 + HMPREF1078_RS12220 0.76 -1.1
427,021 - HMPREF1078_RS12220 0.76 -0.6
427,054 + HMPREF1078_RS12220 0.79 +0.1
427,134 + HMPREF1078_RS12220 0.86 -0.3
427,135 - HMPREF1078_RS12220 0.87 -0.4

Or see this region's nucleotide sequence