Experiment: Columbia 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05085 and HMPREF1078_RS05090 are separated by 163 nucleotides HMPREF1078_RS05090 and HMPREF1078_RS05095 are separated by 5 nucleotides HMPREF1078_RS05095 and HMPREF1078_RS05100 are separated by 125 nucleotides
HMPREF1078_RS05085: HMPREF1078_RS05085 - toprim domain-containing protein, at 278,573 to 279,538
_RS05085
HMPREF1078_RS05090: HMPREF1078_RS05090 - AAA family ATPase, at 279,702 to 280,775
_RS05090
HMPREF1078_RS05095: HMPREF1078_RS05095 - helix-turn-helix domain-containing protein, at 280,781 to 281,068
_RS05095
HMPREF1078_RS05100: HMPREF1078_RS05100 - hypothetical protein, at 281,194 to 282,102
_RS05100
Position (kb) 279
280
281 Strain fitness (log2 ratio) -2
-1
0
1
2 at 278.745 kb on + strand, within HMPREF1078_RS05085 at 278.755 kb on - strand, within HMPREF1078_RS05085 at 278.800 kb on + strand, within HMPREF1078_RS05085 at 278.818 kb on - strand, within HMPREF1078_RS05085 at 278.825 kb on + strand, within HMPREF1078_RS05085 at 278.826 kb on - strand, within HMPREF1078_RS05085 at 278.826 kb on - strand, within HMPREF1078_RS05085 at 278.874 kb on + strand, within HMPREF1078_RS05085 at 278.874 kb on + strand, within HMPREF1078_RS05085 at 278.875 kb on - strand, within HMPREF1078_RS05085 at 278.927 kb on - strand, within HMPREF1078_RS05085 at 278.940 kb on + strand, within HMPREF1078_RS05085 at 279.023 kb on - strand, within HMPREF1078_RS05085 at 279.124 kb on + strand, within HMPREF1078_RS05085 at 279.124 kb on + strand, within HMPREF1078_RS05085 at 279.124 kb on + strand, within HMPREF1078_RS05085 at 279.125 kb on - strand, within HMPREF1078_RS05085 at 279.125 kb on - strand, within HMPREF1078_RS05085 at 279.125 kb on - strand, within HMPREF1078_RS05085 at 279.148 kb on + strand, within HMPREF1078_RS05085 at 279.171 kb on + strand, within HMPREF1078_RS05085 at 279.195 kb on - strand, within HMPREF1078_RS05085 at 279.288 kb on - strand, within HMPREF1078_RS05085 at 279.296 kb on + strand, within HMPREF1078_RS05085 at 279.296 kb on + strand, within HMPREF1078_RS05085 at 279.443 kb on - strand at 279.449 kb on + strand at 279.485 kb on + strand at 279.485 kb on + strand at 279.491 kb on - strand at 279.604 kb on + strand at 279.604 kb on + strand at 279.604 kb on + strand at 279.604 kb on + strand at 279.605 kb on - strand at 279.605 kb on - strand at 279.607 kb on - strand at 279.607 kb on - strand at 279.619 kb on + strand at 279.670 kb on - strand at 279.670 kb on - strand at 279.671 kb on + strand at 279.671 kb on + strand at 279.672 kb on - strand at 279.672 kb on - strand at 279.673 kb on + strand at 279.673 kb on + strand at 279.673 kb on + strand at 279.674 kb on - strand at 279.674 kb on - strand at 279.675 kb on + strand at 279.676 kb on - strand at 279.724 kb on + strand at 279.780 kb on - strand at 279.812 kb on - strand, within HMPREF1078_RS05090 at 279.868 kb on - strand, within HMPREF1078_RS05090 at 279.966 kb on + strand, within HMPREF1078_RS05090 at 279.967 kb on - strand, within HMPREF1078_RS05090 at 279.971 kb on - strand, within HMPREF1078_RS05090 at 280.041 kb on + strand, within HMPREF1078_RS05090 at 280.041 kb on + strand, within HMPREF1078_RS05090 at 280.042 kb on - strand, within HMPREF1078_RS05090 at 280.042 kb on - strand, within HMPREF1078_RS05090 at 280.043 kb on + strand, within HMPREF1078_RS05090 at 280.044 kb on - strand, within HMPREF1078_RS05090 at 280.044 kb on - strand, within HMPREF1078_RS05090 at 280.056 kb on + strand, within HMPREF1078_RS05090 at 280.057 kb on - strand, within HMPREF1078_RS05090 at 280.151 kb on + strand, within HMPREF1078_RS05090 at 280.152 kb on - strand, within HMPREF1078_RS05090 at 280.188 kb on - strand, within HMPREF1078_RS05090 at 280.197 kb on - strand, within HMPREF1078_RS05090 at 280.197 kb on - strand, within HMPREF1078_RS05090 at 280.199 kb on - strand, within HMPREF1078_RS05090 at 280.199 kb on - strand, within HMPREF1078_RS05090 at 280.230 kb on + strand, within HMPREF1078_RS05090 at 280.230 kb on + strand, within HMPREF1078_RS05090 at 280.313 kb on + strand, within HMPREF1078_RS05090 at 280.314 kb on - strand, within HMPREF1078_RS05090 at 280.314 kb on - strand, within HMPREF1078_RS05090 at 280.325 kb on + strand, within HMPREF1078_RS05090 at 280.325 kb on + strand, within HMPREF1078_RS05090 at 280.325 kb on + strand, within HMPREF1078_RS05090 at 280.325 kb on + strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.326 kb on - strand, within HMPREF1078_RS05090 at 280.328 kb on - strand, within HMPREF1078_RS05090 at 280.330 kb on + strand, within HMPREF1078_RS05090 at 280.335 kb on + strand, within HMPREF1078_RS05090 at 280.335 kb on + strand, within HMPREF1078_RS05090 at 280.336 kb on - strand, within HMPREF1078_RS05090 at 280.336 kb on - strand, within HMPREF1078_RS05090 at 280.336 kb on - strand, within HMPREF1078_RS05090 at 280.431 kb on - strand, within HMPREF1078_RS05090 at 280.446 kb on - strand, within HMPREF1078_RS05090 at 280.456 kb on + strand, within HMPREF1078_RS05090 at 280.472 kb on + strand, within HMPREF1078_RS05090 at 280.634 kb on + strand, within HMPREF1078_RS05090 at 280.635 kb on - strand, within HMPREF1078_RS05090 at 280.635 kb on - strand, within HMPREF1078_RS05090 at 280.635 kb on - strand, within HMPREF1078_RS05090 at 280.635 kb on - strand, within HMPREF1078_RS05090 at 280.635 kb on - strand, within HMPREF1078_RS05090 at 280.673 kb on - strand at 280.739 kb on + strand at 280.783 kb on - strand at 280.809 kb on + strand at 280.809 kb on + strand at 280.810 kb on - strand, within HMPREF1078_RS05095 at 280.950 kb on + strand, within HMPREF1078_RS05095 at 280.950 kb on + strand, within HMPREF1078_RS05095 at 280.999 kb on + strand, within HMPREF1078_RS05095 at 281.095 kb on + strand at 281.096 kb on - strand at 281.096 kb on - strand at 281.096 kb on - strand at 281.096 kb on - strand at 281.096 kb on - strand at 281.161 kb on + strand at 281.162 kb on - strand at 281.189 kb on + strand at 281.190 kb on - strand at 281.219 kb on + strand at 281.250 kb on - strand at 281.323 kb on + strand, within HMPREF1078_RS05100 at 281.361 kb on - strand, within HMPREF1078_RS05100 at 281.370 kb on - strand, within HMPREF1078_RS05100 at 281.370 kb on - strand, within HMPREF1078_RS05100 at 281.370 kb on - strand, within HMPREF1078_RS05100 at 281.373 kb on + strand, within HMPREF1078_RS05100 at 281.374 kb on - strand, within HMPREF1078_RS05100 at 281.374 kb on - strand, within HMPREF1078_RS05100 at 281.375 kb on + strand, within HMPREF1078_RS05100 at 281.396 kb on - strand, within HMPREF1078_RS05100 at 281.396 kb on - strand, within HMPREF1078_RS05100 at 281.422 kb on - strand, within HMPREF1078_RS05100 at 281.484 kb on + strand, within HMPREF1078_RS05100 at 281.487 kb on + strand, within HMPREF1078_RS05100 at 281.488 kb on - strand, within HMPREF1078_RS05100 at 281.600 kb on - strand, within HMPREF1078_RS05100 at 281.656 kb on - strand, within HMPREF1078_RS05100 at 281.658 kb on - strand, within HMPREF1078_RS05100 at 281.658 kb on - strand, within HMPREF1078_RS05100 at 281.660 kb on + strand, within HMPREF1078_RS05100 at 281.704 kb on + strand, within HMPREF1078_RS05100 at 281.750 kb on + strand, within HMPREF1078_RS05100 at 281.750 kb on + strand, within HMPREF1078_RS05100 at 281.751 kb on - strand, within HMPREF1078_RS05100
Per-strain Table
Position Strand Gene LocusTag Fraction Columbia 1 x (C) remove 278,745 + HMPREF1078_RS05085 0.18 -0.1 278,755 - HMPREF1078_RS05085 0.19 -0.9 278,800 + HMPREF1078_RS05085 0.23 -0.3 278,818 - HMPREF1078_RS05085 0.25 +0.5 278,825 + HMPREF1078_RS05085 0.26 -0.3 278,826 - HMPREF1078_RS05085 0.26 -1.5 278,826 - HMPREF1078_RS05085 0.26 -0.5 278,874 + HMPREF1078_RS05085 0.31 +0.4 278,874 + HMPREF1078_RS05085 0.31 -0.1 278,875 - HMPREF1078_RS05085 0.31 -2.3 278,927 - HMPREF1078_RS05085 0.37 +0.1 278,940 + HMPREF1078_RS05085 0.38 +1.6 279,023 - HMPREF1078_RS05085 0.47 +0.9 279,124 + HMPREF1078_RS05085 0.57 +1.7 279,124 + HMPREF1078_RS05085 0.57 +0.5 279,124 + HMPREF1078_RS05085 0.57 -1.1 279,125 - HMPREF1078_RS05085 0.57 -0.9 279,125 - HMPREF1078_RS05085 0.57 +0.6 279,125 - HMPREF1078_RS05085 0.57 +0.2 279,148 + HMPREF1078_RS05085 0.60 +0.6 279,171 + HMPREF1078_RS05085 0.62 -0.4 279,195 - HMPREF1078_RS05085 0.64 +0.5 279,288 - HMPREF1078_RS05085 0.74 +0.3 279,296 + HMPREF1078_RS05085 0.75 +0.2 279,296 + HMPREF1078_RS05085 0.75 -1.1 279,443 - +0.1 279,449 + -0.2 279,485 + -0.1 279,485 + -0.8 279,491 - -0.1 279,604 + -2.6 279,604 + -0.4 279,604 + -1.0 279,604 + -1.2 279,605 - -0.7 279,605 - -1.0 279,607 - -0.3 279,607 - +0.3 279,619 + -0.0 279,670 - +0.3 279,670 - -0.9 279,671 + -0.6 279,671 + -0.6 279,672 - -0.1 279,672 - -2.2 279,673 + +0.2 279,673 + +0.6 279,673 + -1.4 279,674 - -1.7 279,674 - +0.2 279,675 + -0.8 279,676 - +0.6 279,724 + +0.1 279,780 - -0.8 279,812 - HMPREF1078_RS05090 0.10 +0.8 279,868 - HMPREF1078_RS05090 0.15 -1.3 279,966 + HMPREF1078_RS05090 0.25 -0.3 279,967 - HMPREF1078_RS05090 0.25 -0.3 279,971 - HMPREF1078_RS05090 0.25 -0.9 280,041 + HMPREF1078_RS05090 0.32 -0.0 280,041 + HMPREF1078_RS05090 0.32 +0.4 280,042 - HMPREF1078_RS05090 0.32 +0.0 280,042 - HMPREF1078_RS05090 0.32 +0.9 280,043 + HMPREF1078_RS05090 0.32 +0.3 280,044 - HMPREF1078_RS05090 0.32 +0.1 280,044 - HMPREF1078_RS05090 0.32 -0.9 280,056 + HMPREF1078_RS05090 0.33 -0.5 280,057 - HMPREF1078_RS05090 0.33 -0.8 280,151 + HMPREF1078_RS05090 0.42 -0.7 280,152 - HMPREF1078_RS05090 0.42 +0.8 280,188 - HMPREF1078_RS05090 0.45 -1.6 280,197 - HMPREF1078_RS05090 0.46 -0.1 280,197 - HMPREF1078_RS05090 0.46 +0.1 280,199 - HMPREF1078_RS05090 0.46 +0.3 280,199 - HMPREF1078_RS05090 0.46 -0.5 280,230 + HMPREF1078_RS05090 0.49 +0.2 280,230 + HMPREF1078_RS05090 0.49 -0.4 280,313 + HMPREF1078_RS05090 0.57 -0.6 280,314 - HMPREF1078_RS05090 0.57 -0.7 280,314 - HMPREF1078_RS05090 0.57 +1.8 280,325 + HMPREF1078_RS05090 0.58 -0.2 280,325 + HMPREF1078_RS05090 0.58 -2.1 280,325 + HMPREF1078_RS05090 0.58 -0.5 280,325 + HMPREF1078_RS05090 0.58 -0.4 280,326 - HMPREF1078_RS05090 0.58 +0.2 280,326 - HMPREF1078_RS05090 0.58 +0.1 280,326 - HMPREF1078_RS05090 0.58 +0.9 280,326 - HMPREF1078_RS05090 0.58 -0.6 280,326 - HMPREF1078_RS05090 0.58 +0.7 280,328 - HMPREF1078_RS05090 0.58 -0.9 280,330 + HMPREF1078_RS05090 0.58 -0.0 280,335 + HMPREF1078_RS05090 0.59 +0.4 280,335 + HMPREF1078_RS05090 0.59 -0.3 280,336 - HMPREF1078_RS05090 0.59 -1.4 280,336 - HMPREF1078_RS05090 0.59 +0.5 280,336 - HMPREF1078_RS05090 0.59 -1.6 280,431 - HMPREF1078_RS05090 0.68 -0.1 280,446 - HMPREF1078_RS05090 0.69 +0.5 280,456 + HMPREF1078_RS05090 0.70 -0.3 280,472 + HMPREF1078_RS05090 0.72 +0.2 280,634 + HMPREF1078_RS05090 0.87 +0.1 280,635 - HMPREF1078_RS05090 0.87 -0.4 280,635 - HMPREF1078_RS05090 0.87 -0.6 280,635 - HMPREF1078_RS05090 0.87 +0.2 280,635 - HMPREF1078_RS05090 0.87 -0.6 280,635 - HMPREF1078_RS05090 0.87 -0.1 280,673 - +0.4 280,739 + +0.1 280,783 - -0.2 280,809 + -2.4 280,809 + +0.4 280,810 - HMPREF1078_RS05095 0.10 -0.9 280,950 + HMPREF1078_RS05095 0.59 -0.7 280,950 + HMPREF1078_RS05095 0.59 -0.5 280,999 + HMPREF1078_RS05095 0.76 -0.2 281,095 + -0.0 281,096 - -1.0 281,096 - -0.7 281,096 - -0.5 281,096 - -0.2 281,096 - -2.2 281,161 + -0.5 281,162 - +0.0 281,189 + +1.3 281,190 - -0.1 281,219 + -0.4 281,250 - +0.3 281,323 + HMPREF1078_RS05100 0.14 +0.3 281,361 - HMPREF1078_RS05100 0.18 +0.3 281,370 - HMPREF1078_RS05100 0.19 +1.0 281,370 - HMPREF1078_RS05100 0.19 -0.4 281,370 - HMPREF1078_RS05100 0.19 +2.5 281,373 + HMPREF1078_RS05100 0.20 +0.2 281,374 - HMPREF1078_RS05100 0.20 +0.0 281,374 - HMPREF1078_RS05100 0.20 +0.8 281,375 + HMPREF1078_RS05100 0.20 -0.1 281,396 - HMPREF1078_RS05100 0.22 -0.4 281,396 - HMPREF1078_RS05100 0.22 -1.1 281,422 - HMPREF1078_RS05100 0.25 -0.6 281,484 + HMPREF1078_RS05100 0.32 +0.7 281,487 + HMPREF1078_RS05100 0.32 -1.7 281,488 - HMPREF1078_RS05100 0.32 -1.2 281,600 - HMPREF1078_RS05100 0.45 +0.2 281,656 - HMPREF1078_RS05100 0.51 -0.5 281,658 - HMPREF1078_RS05100 0.51 -0.3 281,658 - HMPREF1078_RS05100 0.51 -0.2 281,660 + HMPREF1078_RS05100 0.51 +0.4 281,704 + HMPREF1078_RS05100 0.56 -1.5 281,750 + HMPREF1078_RS05100 0.61 -0.8 281,750 + HMPREF1078_RS05100 0.61 -0.7 281,751 - HMPREF1078_RS05100 0.61 +0.4
Or see this region's nucleotide sequence