Experiment: Brucella 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08035 and HMPREF1078_RS08040 are separated by 268 nucleotides HMPREF1078_RS08040 and HMPREF1078_RS08045 are separated by 10 nucleotides
HMPREF1078_RS08035: HMPREF1078_RS08035 - magnesium transporter CorA family protein, at 169,442 to 170,368
_RS08035
HMPREF1078_RS08040: HMPREF1078_RS08040 - winged helix DNA-binding domain-containing protein, at 170,637 to 171,707
_RS08040
HMPREF1078_RS08045: HMPREF1078_RS08045 - L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha, at 171,718 to 173,010
_RS08045
Position (kb) 170
171
172 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 169.711 kb on + strand, within HMPREF1078_RS08035 at 169.711 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.734 kb on + strand, within HMPREF1078_RS08035 at 169.735 kb on - strand, within HMPREF1078_RS08035 at 169.735 kb on - strand, within HMPREF1078_RS08035 at 169.735 kb on - strand, within HMPREF1078_RS08035 at 169.749 kb on - strand, within HMPREF1078_RS08035 at 169.817 kb on + strand, within HMPREF1078_RS08035 at 169.817 kb on + strand, within HMPREF1078_RS08035 at 169.817 kb on + strand, within HMPREF1078_RS08035 at 169.999 kb on + strand, within HMPREF1078_RS08035 at 170.048 kb on + strand, within HMPREF1078_RS08035 at 170.051 kb on - strand, within HMPREF1078_RS08035 at 170.088 kb on + strand, within HMPREF1078_RS08035 at 170.088 kb on + strand, within HMPREF1078_RS08035 at 170.117 kb on + strand, within HMPREF1078_RS08035 at 170.117 kb on + strand, within HMPREF1078_RS08035 at 170.118 kb on - strand, within HMPREF1078_RS08035 at 170.118 kb on - strand, within HMPREF1078_RS08035 at 170.246 kb on + strand, within HMPREF1078_RS08035 at 170.246 kb on + strand, within HMPREF1078_RS08035 at 170.247 kb on - strand, within HMPREF1078_RS08035 at 170.247 kb on - strand, within HMPREF1078_RS08035 at 170.251 kb on + strand, within HMPREF1078_RS08035 at 170.268 kb on - strand, within HMPREF1078_RS08035 at 170.322 kb on + strand at 170.322 kb on + strand at 170.322 kb on + strand at 170.372 kb on - strand at 170.437 kb on - strand at 170.437 kb on - strand at 170.437 kb on - strand at 170.440 kb on + strand at 170.468 kb on + strand at 170.468 kb on + strand at 170.469 kb on - strand at 170.471 kb on + strand at 170.471 kb on + strand at 170.472 kb on - strand at 170.472 kb on - strand at 170.472 kb on - strand at 170.489 kb on - strand at 170.493 kb on - strand at 170.513 kb on + strand at 170.528 kb on - strand at 170.550 kb on + strand at 170.569 kb on + strand at 170.574 kb on - strand at 170.574 kb on - strand at 170.575 kb on + strand at 170.577 kb on - strand at 170.579 kb on + strand at 170.579 kb on - strand at 170.623 kb on + strand at 170.803 kb on + strand, within HMPREF1078_RS08040 at 170.804 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.835 kb on - strand, within HMPREF1078_RS08040 at 170.887 kb on + strand, within HMPREF1078_RS08040 at 170.888 kb on - strand, within HMPREF1078_RS08040 at 170.888 kb on - strand, within HMPREF1078_RS08040 at 170.899 kb on + strand, within HMPREF1078_RS08040 at 170.900 kb on - strand, within HMPREF1078_RS08040 at 170.908 kb on + strand, within HMPREF1078_RS08040 at 170.909 kb on - strand, within HMPREF1078_RS08040 at 170.972 kb on - strand, within HMPREF1078_RS08040 at 171.081 kb on - strand, within HMPREF1078_RS08040 at 171.108 kb on + strand, within HMPREF1078_RS08040 at 171.184 kb on + strand, within HMPREF1078_RS08040 at 171.184 kb on + strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.185 kb on - strand, within HMPREF1078_RS08040 at 171.204 kb on - strand, within HMPREF1078_RS08040 at 171.204 kb on - strand, within HMPREF1078_RS08040 at 171.208 kb on - strand, within HMPREF1078_RS08040 at 171.253 kb on + strand, within HMPREF1078_RS08040 at 171.254 kb on - strand, within HMPREF1078_RS08040 at 171.259 kb on - strand, within HMPREF1078_RS08040 at 171.359 kb on + strand, within HMPREF1078_RS08040 at 171.360 kb on - strand, within HMPREF1078_RS08040 at 171.504 kb on + strand, within HMPREF1078_RS08040 at 171.504 kb on + strand, within HMPREF1078_RS08040 at 171.504 kb on + strand, within HMPREF1078_RS08040 at 171.504 kb on + strand, within HMPREF1078_RS08040 at 171.505 kb on - strand, within HMPREF1078_RS08040 at 171.506 kb on + strand, within HMPREF1078_RS08040 at 171.507 kb on - strand, within HMPREF1078_RS08040 at 171.507 kb on - strand, within HMPREF1078_RS08040 at 171.602 kb on + strand at 171.602 kb on + strand at 171.602 kb on + strand at 171.602 kb on + strand at 171.602 kb on + strand at 171.603 kb on - strand at 171.603 kb on - strand at 171.603 kb on - strand at 171.603 kb on - strand at 171.605 kb on - strand at 171.707 kb on + strand at 171.707 kb on + strand at 171.707 kb on + strand at 171.707 kb on + strand at 171.708 kb on - strand at 171.738 kb on + strand at 171.787 kb on - strand at 171.885 kb on + strand, within HMPREF1078_RS08045 at 171.885 kb on + strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.944 kb on - strand, within HMPREF1078_RS08045 at 171.958 kb on - strand, within HMPREF1078_RS08045 at 172.016 kb on + strand, within HMPREF1078_RS08045 at 172.017 kb on - strand, within HMPREF1078_RS08045 at 172.017 kb on - strand, within HMPREF1078_RS08045 at 172.020 kb on + strand, within HMPREF1078_RS08045 at 172.020 kb on + strand, within HMPREF1078_RS08045 at 172.097 kb on + strand, within HMPREF1078_RS08045 at 172.098 kb on - strand, within HMPREF1078_RS08045 at 172.293 kb on + strand, within HMPREF1078_RS08045 at 172.294 kb on - strand, within HMPREF1078_RS08045 at 172.296 kb on - strand, within HMPREF1078_RS08045 at 172.296 kb on - strand, within HMPREF1078_RS08045 at 172.313 kb on + strand, within HMPREF1078_RS08045 at 172.313 kb on + strand, within HMPREF1078_RS08045 at 172.314 kb on - strand, within HMPREF1078_RS08045 at 172.314 kb on - strand, within HMPREF1078_RS08045 at 172.314 kb on - strand, within HMPREF1078_RS08045 at 172.326 kb on - strand, within HMPREF1078_RS08045 at 172.326 kb on - strand, within HMPREF1078_RS08045 at 172.353 kb on + strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.354 kb on - strand, within HMPREF1078_RS08045 at 172.461 kb on - strand, within HMPREF1078_RS08045 at 172.468 kb on - strand, within HMPREF1078_RS08045 at 172.468 kb on - strand, within HMPREF1078_RS08045 at 172.640 kb on + strand, within HMPREF1078_RS08045 at 172.640 kb on + strand, within HMPREF1078_RS08045 at 172.641 kb on - strand, within HMPREF1078_RS08045 at 172.664 kb on - strand, within HMPREF1078_RS08045 at 172.684 kb on - strand, within HMPREF1078_RS08045
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1 x (C) remove 169,711 + HMPREF1078_RS08035 0.29 -1.7 169,711 + HMPREF1078_RS08035 0.29 -1.8 169,734 + HMPREF1078_RS08035 0.31 -0.7 169,734 + HMPREF1078_RS08035 0.31 -2.9 169,734 + HMPREF1078_RS08035 0.31 -3.4 169,734 + HMPREF1078_RS08035 0.31 -2.1 169,734 + HMPREF1078_RS08035 0.31 -1.2 169,734 + HMPREF1078_RS08035 0.31 -2.3 169,734 + HMPREF1078_RS08035 0.31 -2.8 169,735 - HMPREF1078_RS08035 0.32 -1.3 169,735 - HMPREF1078_RS08035 0.32 -1.7 169,735 - HMPREF1078_RS08035 0.32 -3.4 169,749 - HMPREF1078_RS08035 0.33 -1.5 169,817 + HMPREF1078_RS08035 0.40 -3.3 169,817 + HMPREF1078_RS08035 0.40 -2.9 169,817 + HMPREF1078_RS08035 0.40 -0.7 169,999 + HMPREF1078_RS08035 0.60 -0.3 170,048 + HMPREF1078_RS08035 0.65 -1.3 170,051 - HMPREF1078_RS08035 0.66 -1.5 170,088 + HMPREF1078_RS08035 0.70 -2.4 170,088 + HMPREF1078_RS08035 0.70 -2.7 170,117 + HMPREF1078_RS08035 0.73 -1.8 170,117 + HMPREF1078_RS08035 0.73 -3.5 170,118 - HMPREF1078_RS08035 0.73 -2.7 170,118 - HMPREF1078_RS08035 0.73 -2.1 170,246 + HMPREF1078_RS08035 0.87 -2.7 170,246 + HMPREF1078_RS08035 0.87 -4.5 170,247 - HMPREF1078_RS08035 0.87 -4.2 170,247 - HMPREF1078_RS08035 0.87 -0.3 170,251 + HMPREF1078_RS08035 0.87 -1.8 170,268 - HMPREF1078_RS08035 0.89 -0.7 170,322 + -2.4 170,322 + -2.9 170,322 + -4.2 170,372 - +2.4 170,437 - +0.4 170,437 - +0.6 170,437 - -0.3 170,440 + -0.5 170,468 + +0.7 170,468 + +0.3 170,469 - -0.8 170,471 + +0.1 170,471 + -2.2 170,472 - +0.3 170,472 - -1.2 170,472 - +0.4 170,489 - -0.7 170,493 - +0.4 170,513 + -0.4 170,528 - -1.0 170,550 + +0.2 170,569 + +0.9 170,574 - -0.8 170,574 - -0.4 170,575 + +0.1 170,577 - +0.5 170,579 + -0.8 170,579 - +0.3 170,623 + -0.4 170,803 + HMPREF1078_RS08040 0.15 +0.9 170,804 - HMPREF1078_RS08040 0.16 -0.8 170,835 - HMPREF1078_RS08040 0.18 +0.1 170,835 - HMPREF1078_RS08040 0.18 -0.1 170,835 - HMPREF1078_RS08040 0.18 -0.0 170,887 + HMPREF1078_RS08040 0.23 -0.8 170,888 - HMPREF1078_RS08040 0.23 +0.6 170,888 - HMPREF1078_RS08040 0.23 +0.7 170,899 + HMPREF1078_RS08040 0.24 +0.6 170,900 - HMPREF1078_RS08040 0.25 -1.6 170,908 + HMPREF1078_RS08040 0.25 -1.5 170,909 - HMPREF1078_RS08040 0.25 +0.2 170,972 - HMPREF1078_RS08040 0.31 +0.2 171,081 - HMPREF1078_RS08040 0.41 +0.3 171,108 + HMPREF1078_RS08040 0.44 +0.6 171,184 + HMPREF1078_RS08040 0.51 +0.9 171,184 + HMPREF1078_RS08040 0.51 -0.3 171,185 - HMPREF1078_RS08040 0.51 -0.3 171,185 - HMPREF1078_RS08040 0.51 +0.4 171,185 - HMPREF1078_RS08040 0.51 -0.3 171,204 - HMPREF1078_RS08040 0.53 -0.4 171,204 - HMPREF1078_RS08040 0.53 +2.2 171,208 - HMPREF1078_RS08040 0.53 +0.2 171,253 + HMPREF1078_RS08040 0.58 -0.3 171,254 - HMPREF1078_RS08040 0.58 -0.3 171,259 - HMPREF1078_RS08040 0.58 +1.1 171,359 + HMPREF1078_RS08040 0.67 +1.3 171,360 - HMPREF1078_RS08040 0.68 -0.4 171,504 + HMPREF1078_RS08040 0.81 +0.4 171,504 + HMPREF1078_RS08040 0.81 +2.2 171,504 + HMPREF1078_RS08040 0.81 +0.9 171,504 + HMPREF1078_RS08040 0.81 +0.7 171,505 - HMPREF1078_RS08040 0.81 +0.4 171,506 + HMPREF1078_RS08040 0.81 +0.3 171,507 - HMPREF1078_RS08040 0.81 -0.0 171,507 - HMPREF1078_RS08040 0.81 -1.4 171,602 + +0.7 171,602 + +0.1 171,602 + +1.8 171,602 + +2.2 171,602 + -1.4 171,603 - +0.2 171,603 - +0.1 171,603 - +0.2 171,603 - -2.7 171,605 - -0.2 171,707 + -1.7 171,707 + +1.2 171,707 + +0.4 171,707 + -0.4 171,708 - +0.7 171,738 + -1.0 171,787 - -0.5 171,885 + HMPREF1078_RS08045 0.13 -0.2 171,885 + HMPREF1078_RS08045 0.13 -0.3 171,944 - HMPREF1078_RS08045 0.17 +0.4 171,944 - HMPREF1078_RS08045 0.17 -0.6 171,944 - HMPREF1078_RS08045 0.17 -0.9 171,944 - HMPREF1078_RS08045 0.17 +0.9 171,944 - HMPREF1078_RS08045 0.17 +0.1 171,958 - HMPREF1078_RS08045 0.19 +0.3 172,016 + HMPREF1078_RS08045 0.23 -0.1 172,017 - HMPREF1078_RS08045 0.23 +0.4 172,017 - HMPREF1078_RS08045 0.23 -0.7 172,020 + HMPREF1078_RS08045 0.23 -0.7 172,020 + HMPREF1078_RS08045 0.23 -0.2 172,097 + HMPREF1078_RS08045 0.29 -0.7 172,098 - HMPREF1078_RS08045 0.29 -0.1 172,293 + HMPREF1078_RS08045 0.44 -0.3 172,294 - HMPREF1078_RS08045 0.45 -0.5 172,296 - HMPREF1078_RS08045 0.45 -1.0 172,296 - HMPREF1078_RS08045 0.45 +0.2 172,313 + HMPREF1078_RS08045 0.46 -0.1 172,313 + HMPREF1078_RS08045 0.46 -0.9 172,314 - HMPREF1078_RS08045 0.46 -0.2 172,314 - HMPREF1078_RS08045 0.46 -0.4 172,314 - HMPREF1078_RS08045 0.46 -0.9 172,326 - HMPREF1078_RS08045 0.47 +0.3 172,326 - HMPREF1078_RS08045 0.47 -0.6 172,353 + HMPREF1078_RS08045 0.49 -0.8 172,354 - HMPREF1078_RS08045 0.49 +0.1 172,354 - HMPREF1078_RS08045 0.49 -0.2 172,354 - HMPREF1078_RS08045 0.49 +0.8 172,354 - HMPREF1078_RS08045 0.49 +0.0 172,461 - HMPREF1078_RS08045 0.57 +0.2 172,468 - HMPREF1078_RS08045 0.58 +0.5 172,468 - HMPREF1078_RS08045 0.58 +0.6 172,640 + HMPREF1078_RS08045 0.71 +0.8 172,640 + HMPREF1078_RS08045 0.71 -2.0 172,641 - HMPREF1078_RS08045 0.71 +0.9 172,664 - HMPREF1078_RS08045 0.73 -0.6 172,684 - HMPREF1078_RS08045 0.75 -2.0
Or see this region's nucleotide sequence