Experiment: BHI 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03355 and HMPREF1078_RS03360 overlap by 19 nucleotides HMPREF1078_RS03360 and HMPREF1078_RS03365 are separated by 3 nucleotides HMPREF1078_RS03365 and HMPREF1078_RS03370 are separated by 27 nucleotides
HMPREF1078_RS03355: HMPREF1078_RS03355 - hypothetical protein, at 791,402 to 791,836
_RS03355
HMPREF1078_RS03360: HMPREF1078_RS03360 - MarR family transcriptional regulator, at 791,818 to 792,435
_RS03360
HMPREF1078_RS03365: HMPREF1078_RS03365 - hypothetical protein, at 792,439 to 792,837
_RS03365
HMPREF1078_RS03370: HMPREF1078_RS03370 - ParA family protein, at 792,865 to 793,689
_RS03370
Position (kb) 792
793 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 791.468 kb on + strand, within HMPREF1078_RS03355 at 791.483 kb on - strand, within HMPREF1078_RS03355 at 791.567 kb on - strand, within HMPREF1078_RS03355 at 791.582 kb on - strand, within HMPREF1078_RS03355 at 791.612 kb on - strand, within HMPREF1078_RS03355 at 791.614 kb on + strand, within HMPREF1078_RS03355 at 791.660 kb on + strand, within HMPREF1078_RS03355 at 791.696 kb on + strand, within HMPREF1078_RS03355 at 791.696 kb on + strand, within HMPREF1078_RS03355 at 791.697 kb on - strand, within HMPREF1078_RS03355 at 791.767 kb on + strand, within HMPREF1078_RS03355 at 791.771 kb on + strand, within HMPREF1078_RS03355 at 791.771 kb on + strand, within HMPREF1078_RS03355 at 791.772 kb on - strand, within HMPREF1078_RS03355 at 791.772 kb on - strand, within HMPREF1078_RS03355 at 791.802 kb on - strand at 791.803 kb on + strand at 791.816 kb on + strand at 791.816 kb on + strand at 791.816 kb on + strand at 791.816 kb on + strand at 791.816 kb on + strand at 791.817 kb on - strand at 791.819 kb on + strand at 791.845 kb on + strand at 791.849 kb on - strand at 791.957 kb on + strand, within HMPREF1078_RS03360 at 791.958 kb on - strand, within HMPREF1078_RS03360 at 791.960 kb on + strand, within HMPREF1078_RS03360 at 791.961 kb on - strand, within HMPREF1078_RS03360 at 791.990 kb on + strand, within HMPREF1078_RS03360 at 791.991 kb on - strand, within HMPREF1078_RS03360 at 791.991 kb on - strand, within HMPREF1078_RS03360 at 792.016 kb on + strand, within HMPREF1078_RS03360 at 792.017 kb on - strand, within HMPREF1078_RS03360 at 792.022 kb on + strand, within HMPREF1078_RS03360 at 792.058 kb on + strand, within HMPREF1078_RS03360 at 792.100 kb on + strand, within HMPREF1078_RS03360 at 792.101 kb on - strand, within HMPREF1078_RS03360 at 792.117 kb on + strand, within HMPREF1078_RS03360 at 792.118 kb on - strand, within HMPREF1078_RS03360 at 792.257 kb on + strand, within HMPREF1078_RS03360 at 792.257 kb on + strand, within HMPREF1078_RS03360 at 792.296 kb on - strand, within HMPREF1078_RS03360 at 792.362 kb on + strand, within HMPREF1078_RS03360 at 792.362 kb on + strand, within HMPREF1078_RS03360 at 792.362 kb on + strand, within HMPREF1078_RS03360 at 792.362 kb on + strand, within HMPREF1078_RS03360 at 792.363 kb on - strand, within HMPREF1078_RS03360 at 792.363 kb on - strand, within HMPREF1078_RS03360 at 792.447 kb on + strand at 792.447 kb on + strand at 792.448 kb on - strand at 792.449 kb on + strand at 792.450 kb on - strand at 792.483 kb on - strand, within HMPREF1078_RS03365 at 792.504 kb on - strand, within HMPREF1078_RS03365 at 792.523 kb on + strand, within HMPREF1078_RS03365 at 792.523 kb on + strand, within HMPREF1078_RS03365 at 792.524 kb on - strand, within HMPREF1078_RS03365 at 792.562 kb on + strand, within HMPREF1078_RS03365 at 792.562 kb on + strand, within HMPREF1078_RS03365 at 792.562 kb on + strand, within HMPREF1078_RS03365 at 792.562 kb on + strand, within HMPREF1078_RS03365 at 792.562 kb on + strand, within HMPREF1078_RS03365 at 792.563 kb on - strand, within HMPREF1078_RS03365 at 792.563 kb on - strand, within HMPREF1078_RS03365 at 792.563 kb on - strand, within HMPREF1078_RS03365 at 792.564 kb on + strand, within HMPREF1078_RS03365 at 792.702 kb on + strand, within HMPREF1078_RS03365 at 792.705 kb on + strand, within HMPREF1078_RS03365 at 792.727 kb on - strand, within HMPREF1078_RS03365 at 792.775 kb on + strand, within HMPREF1078_RS03365 at 792.775 kb on + strand, within HMPREF1078_RS03365 at 792.777 kb on + strand, within HMPREF1078_RS03365 at 792.777 kb on + strand, within HMPREF1078_RS03365 at 792.777 kb on + strand, within HMPREF1078_RS03365 at 792.778 kb on - strand, within HMPREF1078_RS03365 at 792.778 kb on - strand, within HMPREF1078_RS03365 at 792.814 kb on + strand at 792.815 kb on - strand at 792.823 kb on + strand at 792.826 kb on - strand at 792.837 kb on + strand at 792.837 kb on + strand at 792.838 kb on - strand at 792.838 kb on - strand at 792.843 kb on + strand at 792.843 kb on + strand at 792.843 kb on + strand at 792.866 kb on + strand at 792.867 kb on - strand at 792.867 kb on - strand at 792.879 kb on + strand at 792.974 kb on - strand, within HMPREF1078_RS03370 at 793.020 kb on + strand, within HMPREF1078_RS03370 at 793.028 kb on + strand, within HMPREF1078_RS03370 at 793.030 kb on + strand, within HMPREF1078_RS03370 at 793.030 kb on + strand, within HMPREF1078_RS03370 at 793.030 kb on + strand, within HMPREF1078_RS03370 at 793.030 kb on + strand, within HMPREF1078_RS03370 at 793.030 kb on + strand, within HMPREF1078_RS03370 at 793.030 kb on + strand, within HMPREF1078_RS03370 at 793.030 kb on + strand, within HMPREF1078_RS03370 at 793.031 kb on - strand, within HMPREF1078_RS03370 at 793.031 kb on - strand, within HMPREF1078_RS03370 at 793.035 kb on + strand, within HMPREF1078_RS03370 at 793.050 kb on + strand, within HMPREF1078_RS03370 at 793.051 kb on - strand, within HMPREF1078_RS03370 at 793.133 kb on + strand, within HMPREF1078_RS03370 at 793.133 kb on + strand, within HMPREF1078_RS03370 at 793.133 kb on + strand, within HMPREF1078_RS03370 at 793.134 kb on - strand, within HMPREF1078_RS03370 at 793.139 kb on + strand, within HMPREF1078_RS03370 at 793.152 kb on + strand, within HMPREF1078_RS03370 at 793.174 kb on - strand, within HMPREF1078_RS03370 at 793.209 kb on + strand, within HMPREF1078_RS03370 at 793.210 kb on - strand, within HMPREF1078_RS03370 at 793.252 kb on + strand, within HMPREF1078_RS03370 at 793.253 kb on - strand, within HMPREF1078_RS03370 at 793.253 kb on - strand, within HMPREF1078_RS03370 at 793.319 kb on + strand, within HMPREF1078_RS03370 at 793.320 kb on - strand, within HMPREF1078_RS03370 at 793.320 kb on - strand, within HMPREF1078_RS03370 at 793.339 kb on - strand, within HMPREF1078_RS03370 at 793.351 kb on + strand, within HMPREF1078_RS03370 at 793.357 kb on + strand, within HMPREF1078_RS03370 at 793.357 kb on + strand, within HMPREF1078_RS03370 at 793.357 kb on + strand, within HMPREF1078_RS03370 at 793.357 kb on + strand, within HMPREF1078_RS03370 at 793.358 kb on - strand, within HMPREF1078_RS03370 at 793.445 kb on - strand, within HMPREF1078_RS03370 at 793.478 kb on + strand, within HMPREF1078_RS03370 at 793.478 kb on + strand, within HMPREF1078_RS03370 at 793.486 kb on + strand, within HMPREF1078_RS03370 at 793.486 kb on + strand, within HMPREF1078_RS03370 at 793.486 kb on + strand, within HMPREF1078_RS03370 at 793.487 kb on - strand, within HMPREF1078_RS03370 at 793.487 kb on - strand, within HMPREF1078_RS03370 at 793.493 kb on + strand, within HMPREF1078_RS03370 at 793.493 kb on + strand, within HMPREF1078_RS03370 at 793.494 kb on - strand, within HMPREF1078_RS03370 at 793.494 kb on - strand, within HMPREF1078_RS03370 at 793.570 kb on + strand, within HMPREF1078_RS03370 at 793.571 kb on - strand, within HMPREF1078_RS03370 at 793.576 kb on + strand, within HMPREF1078_RS03370 at 793.576 kb on + strand, within HMPREF1078_RS03370 at 793.576 kb on + strand, within HMPREF1078_RS03370 at 793.585 kb on + strand, within HMPREF1078_RS03370 at 793.605 kb on - strand, within HMPREF1078_RS03370 at 793.639 kb on + strand at 793.639 kb on + strand at 793.639 kb on + strand at 793.640 kb on - strand at 793.670 kb on - strand at 793.670 kb on - strand at 793.670 kb on - strand at 793.670 kb on - strand at 793.671 kb on + strand at 793.685 kb on - strand at 793.685 kb on - strand at 793.696 kb on + strand at 793.697 kb on - strand at 793.720 kb on + strand at 793.720 kb on + strand at 793.720 kb on + strand at 793.720 kb on + strand at 793.720 kb on + strand at 793.732 kb on + strand at 793.769 kb on - strand at 793.773 kb on - strand at 793.782 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction BHI 1 x (C) remove 791,468 + HMPREF1078_RS03355 0.15 -0.9 791,483 - HMPREF1078_RS03355 0.19 -0.0 791,567 - HMPREF1078_RS03355 0.38 -0.9 791,582 - HMPREF1078_RS03355 0.41 +0.0 791,612 - HMPREF1078_RS03355 0.48 -1.4 791,614 + HMPREF1078_RS03355 0.49 +0.2 791,660 + HMPREF1078_RS03355 0.59 -0.4 791,696 + HMPREF1078_RS03355 0.68 +0.8 791,696 + HMPREF1078_RS03355 0.68 +0.1 791,697 - HMPREF1078_RS03355 0.68 -0.2 791,767 + HMPREF1078_RS03355 0.84 +1.4 791,771 + HMPREF1078_RS03355 0.85 -0.8 791,771 + HMPREF1078_RS03355 0.85 +0.7 791,772 - HMPREF1078_RS03355 0.85 -0.5 791,772 - HMPREF1078_RS03355 0.85 -0.2 791,802 - +0.1 791,803 + +0.1 791,816 + -1.3 791,816 + +1.5 791,816 + +0.1 791,816 + -0.3 791,816 + +0.6 791,817 - -1.4 791,819 + -1.8 791,845 + +0.8 791,849 - -0.4 791,957 + HMPREF1078_RS03360 0.22 -0.1 791,958 - HMPREF1078_RS03360 0.23 +0.4 791,960 + HMPREF1078_RS03360 0.23 +0.1 791,961 - HMPREF1078_RS03360 0.23 -0.4 791,990 + HMPREF1078_RS03360 0.28 -0.5 791,991 - HMPREF1078_RS03360 0.28 +0.3 791,991 - HMPREF1078_RS03360 0.28 +0.1 792,016 + HMPREF1078_RS03360 0.32 +0.4 792,017 - HMPREF1078_RS03360 0.32 +0.2 792,022 + HMPREF1078_RS03360 0.33 -0.6 792,058 + HMPREF1078_RS03360 0.39 +0.2 792,100 + HMPREF1078_RS03360 0.46 -1.0 792,101 - HMPREF1078_RS03360 0.46 -0.8 792,117 + HMPREF1078_RS03360 0.48 -1.0 792,118 - HMPREF1078_RS03360 0.49 +1.9 792,257 + HMPREF1078_RS03360 0.71 -1.5 792,257 + HMPREF1078_RS03360 0.71 -0.8 792,296 - HMPREF1078_RS03360 0.77 +0.6 792,362 + HMPREF1078_RS03360 0.88 -1.6 792,362 + HMPREF1078_RS03360 0.88 -0.5 792,362 + HMPREF1078_RS03360 0.88 +1.9 792,362 + HMPREF1078_RS03360 0.88 -0.8 792,363 - HMPREF1078_RS03360 0.88 -1.0 792,363 - HMPREF1078_RS03360 0.88 +0.5 792,447 + -0.9 792,447 + +1.0 792,448 - -0.4 792,449 + -1.1 792,450 - +0.9 792,483 - HMPREF1078_RS03365 0.11 +0.1 792,504 - HMPREF1078_RS03365 0.16 -0.4 792,523 + HMPREF1078_RS03365 0.21 +0.1 792,523 + HMPREF1078_RS03365 0.21 -0.6 792,524 - HMPREF1078_RS03365 0.21 +0.4 792,562 + HMPREF1078_RS03365 0.31 +1.1 792,562 + HMPREF1078_RS03365 0.31 +0.7 792,562 + HMPREF1078_RS03365 0.31 -0.7 792,562 + HMPREF1078_RS03365 0.31 -0.9 792,562 + HMPREF1078_RS03365 0.31 +0.4 792,563 - HMPREF1078_RS03365 0.31 -1.3 792,563 - HMPREF1078_RS03365 0.31 +1.4 792,563 - HMPREF1078_RS03365 0.31 +0.1 792,564 + HMPREF1078_RS03365 0.31 +2.0 792,702 + HMPREF1078_RS03365 0.66 -0.0 792,705 + HMPREF1078_RS03365 0.67 +4.0 792,727 - HMPREF1078_RS03365 0.72 +0.2 792,775 + HMPREF1078_RS03365 0.84 +0.2 792,775 + HMPREF1078_RS03365 0.84 -1.1 792,777 + HMPREF1078_RS03365 0.85 +1.0 792,777 + HMPREF1078_RS03365 0.85 +1.5 792,777 + HMPREF1078_RS03365 0.85 +0.3 792,778 - HMPREF1078_RS03365 0.85 +0.4 792,778 - HMPREF1078_RS03365 0.85 -1.5 792,814 + -0.7 792,815 - -0.3 792,823 + -0.8 792,826 - -1.0 792,837 + +0.2 792,837 + -1.3 792,838 - -1.0 792,838 - -0.8 792,843 + -0.6 792,843 + +0.4 792,843 + -1.6 792,866 + +0.4 792,867 - -0.6 792,867 - +1.0 792,879 + -0.4 792,974 - HMPREF1078_RS03370 0.13 -0.2 793,020 + HMPREF1078_RS03370 0.19 -0.2 793,028 + HMPREF1078_RS03370 0.20 -0.8 793,030 + HMPREF1078_RS03370 0.20 -0.7 793,030 + HMPREF1078_RS03370 0.20 -1.3 793,030 + HMPREF1078_RS03370 0.20 -0.2 793,030 + HMPREF1078_RS03370 0.20 -0.9 793,030 + HMPREF1078_RS03370 0.20 +2.4 793,030 + HMPREF1078_RS03370 0.20 +0.9 793,030 + HMPREF1078_RS03370 0.20 +1.4 793,031 - HMPREF1078_RS03370 0.20 +0.7 793,031 - HMPREF1078_RS03370 0.20 +2.7 793,035 + HMPREF1078_RS03370 0.21 +0.4 793,050 + HMPREF1078_RS03370 0.22 +0.0 793,051 - HMPREF1078_RS03370 0.23 +1.1 793,133 + HMPREF1078_RS03370 0.32 -0.4 793,133 + HMPREF1078_RS03370 0.32 -0.2 793,133 + HMPREF1078_RS03370 0.32 -0.7 793,134 - HMPREF1078_RS03370 0.33 +1.9 793,139 + HMPREF1078_RS03370 0.33 -0.4 793,152 + HMPREF1078_RS03370 0.35 -0.0 793,174 - HMPREF1078_RS03370 0.37 -0.3 793,209 + HMPREF1078_RS03370 0.42 +1.0 793,210 - HMPREF1078_RS03370 0.42 +0.8 793,252 + HMPREF1078_RS03370 0.47 +0.2 793,253 - HMPREF1078_RS03370 0.47 +3.0 793,253 - HMPREF1078_RS03370 0.47 -0.6 793,319 + HMPREF1078_RS03370 0.55 +0.7 793,320 - HMPREF1078_RS03370 0.55 -1.7 793,320 - HMPREF1078_RS03370 0.55 +0.2 793,339 - HMPREF1078_RS03370 0.57 -0.3 793,351 + HMPREF1078_RS03370 0.59 -0.4 793,357 + HMPREF1078_RS03370 0.60 +0.8 793,357 + HMPREF1078_RS03370 0.60 -0.5 793,357 + HMPREF1078_RS03370 0.60 -1.1 793,357 + HMPREF1078_RS03370 0.60 +0.1 793,358 - HMPREF1078_RS03370 0.60 +0.4 793,445 - HMPREF1078_RS03370 0.70 -0.0 793,478 + HMPREF1078_RS03370 0.74 +0.7 793,478 + HMPREF1078_RS03370 0.74 -0.2 793,486 + HMPREF1078_RS03370 0.75 +0.2 793,486 + HMPREF1078_RS03370 0.75 -1.5 793,486 + HMPREF1078_RS03370 0.75 -0.7 793,487 - HMPREF1078_RS03370 0.75 -1.0 793,487 - HMPREF1078_RS03370 0.75 -0.8 793,493 + HMPREF1078_RS03370 0.76 +1.6 793,493 + HMPREF1078_RS03370 0.76 -0.7 793,494 - HMPREF1078_RS03370 0.76 -0.7 793,494 - HMPREF1078_RS03370 0.76 +0.2 793,570 + HMPREF1078_RS03370 0.85 +0.0 793,571 - HMPREF1078_RS03370 0.86 +1.8 793,576 + HMPREF1078_RS03370 0.86 -0.6 793,576 + HMPREF1078_RS03370 0.86 +0.7 793,576 + HMPREF1078_RS03370 0.86 +0.6 793,585 + HMPREF1078_RS03370 0.87 -0.0 793,605 - HMPREF1078_RS03370 0.90 +0.5 793,639 + -0.3 793,639 + -0.8 793,639 + +0.1 793,640 - +0.4 793,670 - -0.3 793,670 - +0.8 793,670 - -0.9 793,670 - +1.3 793,671 + -0.3 793,685 - +0.6 793,685 - +2.4 793,696 + +2.3 793,697 - -0.0 793,720 + +1.1 793,720 + +1.1 793,720 + -0.2 793,720 + -0.5 793,720 + +0.1 793,732 + +1.6 793,769 - -0.4 793,773 - +0.3 793,782 - +0.4
Or see this region's nucleotide sequence