Experiment: BHI 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00315 and HMPREF1078_RS00320 are separated by 84 nucleotides HMPREF1078_RS00320 and HMPREF1078_RS00325 are separated by 1 nucleotides HMPREF1078_RS00325 and HMPREF1078_RS00330 are separated by 4 nucleotides
HMPREF1078_RS00315: HMPREF1078_RS00315 - aspartate--tRNA ligase, at 69,484 to 71,241
_RS00315
HMPREF1078_RS00320: HMPREF1078_RS00320 - Nif3-like dinuclear metal center hexameric protein, at 71,326 to 72,423
_RS00320
HMPREF1078_RS00325: HMPREF1078_RS00325 - C4-type zinc ribbon domain-containing protein, at 72,425 to 73,189
_RS00325
HMPREF1078_RS00330: HMPREF1078_RS00330 - tRNA lysidine(34) synthetase TilS, at 73,194 to 74,528
_RS00330
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1 at 71.213 kb on + strand at 71.225 kb on + strand at 71.229 kb on + strand at 71.229 kb on + strand at 71.229 kb on + strand at 71.229 kb on + strand at 71.229 kb on + strand at 71.230 kb on - strand at 71.239 kb on + strand at 71.239 kb on + strand at 71.240 kb on - strand at 71.242 kb on + strand at 71.242 kb on + strand at 71.243 kb on - strand at 71.243 kb on - strand at 71.243 kb on - strand at 71.243 kb on - strand at 71.244 kb on + strand at 71.244 kb on + strand at 71.244 kb on + strand at 71.245 kb on - strand at 71.251 kb on - strand at 71.251 kb on - strand at 71.292 kb on - strand at 71.314 kb on - strand at 71.318 kb on + strand at 71.326 kb on - strand at 71.344 kb on - strand at 71.345 kb on + strand at 71.346 kb on - strand at 71.346 kb on - strand at 71.346 kb on - strand at 71.346 kb on - strand at 71.365 kb on + strand at 71.502 kb on + strand, within HMPREF1078_RS00320 at 71.503 kb on - strand, within HMPREF1078_RS00320 at 71.566 kb on + strand, within HMPREF1078_RS00320 at 71.567 kb on - strand, within HMPREF1078_RS00320 at 71.567 kb on - strand, within HMPREF1078_RS00320 at 71.567 kb on - strand, within HMPREF1078_RS00320 at 71.599 kb on + strand, within HMPREF1078_RS00320 at 71.599 kb on - strand, within HMPREF1078_RS00320 at 71.600 kb on - strand, within HMPREF1078_RS00320 at 71.600 kb on - strand, within HMPREF1078_RS00320 at 71.614 kb on + strand, within HMPREF1078_RS00320 at 71.719 kb on - strand, within HMPREF1078_RS00320 at 71.755 kb on + strand, within HMPREF1078_RS00320 at 71.823 kb on + strand, within HMPREF1078_RS00320 at 71.892 kb on - strand, within HMPREF1078_RS00320 at 71.950 kb on - strand, within HMPREF1078_RS00320 at 71.989 kb on + strand, within HMPREF1078_RS00320 at 72.221 kb on - strand, within HMPREF1078_RS00320 at 72.257 kb on - strand, within HMPREF1078_RS00320 at 72.268 kb on + strand, within HMPREF1078_RS00320 at 72.311 kb on - strand, within HMPREF1078_RS00320 at 72.328 kb on - strand at 72.336 kb on + strand at 73.179 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction BHI 1 x (C) remove 71,213 + -0.2 71,225 + -0.3 71,229 + +0.3 71,229 + -1.2 71,229 + -0.6 71,229 + +0.1 71,229 + -0.2 71,230 - -1.1 71,239 + +0.2 71,239 + -0.6 71,240 - +0.1 71,242 + +0.6 71,242 + -0.2 71,243 - -0.7 71,243 - -0.2 71,243 - -0.4 71,243 - +1.6 71,244 + +1.4 71,244 + -0.6 71,244 + +0.2 71,245 - -0.1 71,251 - -0.1 71,251 - +0.1 71,292 - -0.3 71,314 - +0.3 71,318 + -0.2 71,326 - -0.5 71,344 - +0.9 71,345 + +0.8 71,346 - -0.7 71,346 - -0.5 71,346 - +0.3 71,346 - -0.3 71,365 + -0.1 71,502 + HMPREF1078_RS00320 0.16 -1.0 71,503 - HMPREF1078_RS00320 0.16 +0.1 71,566 + HMPREF1078_RS00320 0.22 +1.0 71,567 - HMPREF1078_RS00320 0.22 +0.4 71,567 - HMPREF1078_RS00320 0.22 +0.7 71,567 - HMPREF1078_RS00320 0.22 +0.5 71,599 + HMPREF1078_RS00320 0.25 -1.3 71,599 - HMPREF1078_RS00320 0.25 +0.1 71,600 - HMPREF1078_RS00320 0.25 +0.1 71,600 - HMPREF1078_RS00320 0.25 +0.5 71,614 + HMPREF1078_RS00320 0.26 +0.1 71,719 - HMPREF1078_RS00320 0.36 +0.7 71,755 + HMPREF1078_RS00320 0.39 -0.0 71,823 + HMPREF1078_RS00320 0.45 +0.2 71,892 - HMPREF1078_RS00320 0.52 -0.1 71,950 - HMPREF1078_RS00320 0.57 -1.5 71,989 + HMPREF1078_RS00320 0.60 +0.0 72,221 - HMPREF1078_RS00320 0.82 +0.5 72,257 - HMPREF1078_RS00320 0.85 -0.1 72,268 + HMPREF1078_RS00320 0.86 -0.7 72,311 - HMPREF1078_RS00320 0.90 +0.1 72,328 - -0.1 72,336 + -2.0 73,179 + -0.2
Or see this region's nucleotide sequence