Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS07690

Experiment: ABB 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS07685 and HMPREF1078_RS07690 are separated by 6 nucleotidesHMPREF1078_RS07690 and HMPREF1078_RS07695 are separated by 121 nucleotides HMPREF1078_RS07685: HMPREF1078_RS07685 - efflux RND transporter periplasmic adaptor subunit, at 76,065 to 77,180 _RS07685 HMPREF1078_RS07690: HMPREF1078_RS07690 - multidrug efflux RND transporter permease subunit, at 77,187 to 80,309 _RS07690 HMPREF1078_RS07695: HMPREF1078_RS07695 - methionyl-tRNA formyltransferase, at 80,431 to 81,405 _RS07695 Position (kb) 77 78 79 80 81Strain fitness (log2 ratio) -2 -1 0 1 2 3at 76.564 kb on - strand, within HMPREF1078_RS07685at 76.585 kb on - strand, within HMPREF1078_RS07685at 76.611 kb on + strand, within HMPREF1078_RS07685at 76.611 kb on + strand, within HMPREF1078_RS07685at 76.626 kb on + strand, within HMPREF1078_RS07685at 76.627 kb on - strand, within HMPREF1078_RS07685at 76.627 kb on - strand, within HMPREF1078_RS07685at 76.662 kb on - strand, within HMPREF1078_RS07685at 76.666 kb on + strand, within HMPREF1078_RS07685at 76.667 kb on - strand, within HMPREF1078_RS07685at 76.687 kb on - strand, within HMPREF1078_RS07685at 76.687 kb on - strand, within HMPREF1078_RS07685at 76.831 kb on - strand, within HMPREF1078_RS07685at 76.921 kb on - strand, within HMPREF1078_RS07685at 76.925 kb on + strand, within HMPREF1078_RS07685at 76.926 kb on - strand, within HMPREF1078_RS07685at 76.960 kb on - strand, within HMPREF1078_RS07685at 77.017 kb on + strand, within HMPREF1078_RS07685at 77.121 kb on + strandat 77.121 kb on + strandat 77.156 kb on + strandat 77.163 kb on - strandat 77.166 kb on - strandat 77.171 kb on + strandat 77.173 kb on + strandat 77.174 kb on - strandat 77.273 kb on - strandat 77.273 kb on - strandat 77.315 kb on - strandat 77.415 kb on + strandat 77.448 kb on + strandat 77.557 kb on + strand, within HMPREF1078_RS07690at 77.598 kb on - strand, within HMPREF1078_RS07690at 77.734 kb on - strand, within HMPREF1078_RS07690at 77.744 kb on + strand, within HMPREF1078_RS07690at 77.744 kb on + strand, within HMPREF1078_RS07690at 77.745 kb on - strand, within HMPREF1078_RS07690at 77.745 kb on - strand, within HMPREF1078_RS07690at 77.896 kb on + strand, within HMPREF1078_RS07690at 77.897 kb on - strand, within HMPREF1078_RS07690at 77.966 kb on - strand, within HMPREF1078_RS07690at 77.966 kb on - strand, within HMPREF1078_RS07690at 77.999 kb on - strand, within HMPREF1078_RS07690at 78.055 kb on + strand, within HMPREF1078_RS07690at 78.157 kb on - strand, within HMPREF1078_RS07690at 78.252 kb on - strand, within HMPREF1078_RS07690at 78.363 kb on - strand, within HMPREF1078_RS07690at 78.491 kb on + strand, within HMPREF1078_RS07690at 78.491 kb on + strand, within HMPREF1078_RS07690at 78.492 kb on - strand, within HMPREF1078_RS07690at 78.533 kb on - strand, within HMPREF1078_RS07690at 78.533 kb on - strand, within HMPREF1078_RS07690at 78.587 kb on - strand, within HMPREF1078_RS07690at 78.587 kb on - strand, within HMPREF1078_RS07690at 78.587 kb on - strand, within HMPREF1078_RS07690at 78.653 kb on + strand, within HMPREF1078_RS07690at 78.654 kb on - strand, within HMPREF1078_RS07690at 78.805 kb on + strand, within HMPREF1078_RS07690at 78.843 kb on - strand, within HMPREF1078_RS07690at 78.994 kb on - strand, within HMPREF1078_RS07690at 78.994 kb on - strand, within HMPREF1078_RS07690at 78.994 kb on - strand, within HMPREF1078_RS07690at 79.053 kb on + strand, within HMPREF1078_RS07690at 79.054 kb on - strand, within HMPREF1078_RS07690at 79.054 kb on - strand, within HMPREF1078_RS07690at 79.101 kb on - strand, within HMPREF1078_RS07690at 79.140 kb on + strand, within HMPREF1078_RS07690at 79.163 kb on - strand, within HMPREF1078_RS07690at 79.329 kb on + strand, within HMPREF1078_RS07690at 79.330 kb on - strand, within HMPREF1078_RS07690at 79.350 kb on + strand, within HMPREF1078_RS07690at 79.351 kb on - strand, within HMPREF1078_RS07690at 79.420 kb on + strand, within HMPREF1078_RS07690at 79.421 kb on - strand, within HMPREF1078_RS07690at 79.426 kb on - strand, within HMPREF1078_RS07690at 79.426 kb on - strand, within HMPREF1078_RS07690at 79.429 kb on - strand, within HMPREF1078_RS07690at 79.429 kb on - strand, within HMPREF1078_RS07690at 79.429 kb on - strand, within HMPREF1078_RS07690at 79.431 kb on - strand, within HMPREF1078_RS07690at 79.444 kb on - strand, within HMPREF1078_RS07690at 79.447 kb on + strand, within HMPREF1078_RS07690at 79.448 kb on - strand, within HMPREF1078_RS07690at 79.472 kb on + strand, within HMPREF1078_RS07690at 79.473 kb on - strand, within HMPREF1078_RS07690at 79.476 kb on + strand, within HMPREF1078_RS07690at 79.483 kb on + strand, within HMPREF1078_RS07690at 79.519 kb on + strand, within HMPREF1078_RS07690at 79.626 kb on + strand, within HMPREF1078_RS07690at 79.627 kb on - strand, within HMPREF1078_RS07690at 79.628 kb on + strand, within HMPREF1078_RS07690at 79.628 kb on + strand, within HMPREF1078_RS07690at 79.628 kb on + strand, within HMPREF1078_RS07690at 79.629 kb on - strand, within HMPREF1078_RS07690at 79.629 kb on - strand, within HMPREF1078_RS07690at 79.629 kb on - strand, within HMPREF1078_RS07690at 79.629 kb on - strand, within HMPREF1078_RS07690at 79.631 kb on + strand, within HMPREF1078_RS07690at 79.631 kb on + strand, within HMPREF1078_RS07690at 79.632 kb on - strand, within HMPREF1078_RS07690at 79.632 kb on - strand, within HMPREF1078_RS07690at 79.632 kb on - strand, within HMPREF1078_RS07690at 79.632 kb on - strand, within HMPREF1078_RS07690at 79.635 kb on + strand, within HMPREF1078_RS07690at 79.635 kb on + strand, within HMPREF1078_RS07690at 79.635 kb on + strand, within HMPREF1078_RS07690at 79.636 kb on - strand, within HMPREF1078_RS07690at 79.636 kb on - strand, within HMPREF1078_RS07690at 79.636 kb on - strand, within HMPREF1078_RS07690at 79.636 kb on - strand, within HMPREF1078_RS07690at 79.636 kb on - strand, within HMPREF1078_RS07690at 79.636 kb on - strand, within HMPREF1078_RS07690at 79.636 kb on - strand, within HMPREF1078_RS07690at 79.637 kb on + strand, within HMPREF1078_RS07690at 79.638 kb on - strand, within HMPREF1078_RS07690at 79.661 kb on - strand, within HMPREF1078_RS07690at 79.674 kb on + strand, within HMPREF1078_RS07690at 79.676 kb on + strand, within HMPREF1078_RS07690at 79.676 kb on + strand, within HMPREF1078_RS07690at 79.715 kb on - strand, within HMPREF1078_RS07690at 79.726 kb on + strand, within HMPREF1078_RS07690at 79.733 kb on + strand, within HMPREF1078_RS07690at 79.950 kb on + strand, within HMPREF1078_RS07690at 79.951 kb on - strand, within HMPREF1078_RS07690at 79.951 kb on - strand, within HMPREF1078_RS07690at 79.951 kb on - strand, within HMPREF1078_RS07690at 79.953 kb on - strand, within HMPREF1078_RS07690at 80.028 kb on + strandat 80.235 kb on - strandat 80.263 kb on + strandat 80.263 kb on + strandat 80.279 kb on - strandat 80.442 kb on + strandat 80.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ABB 1 x (C)
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76,564 - HMPREF1078_RS07685 0.45 +0.5
76,585 - HMPREF1078_RS07685 0.47 -0.5
76,611 + HMPREF1078_RS07685 0.49 -1.5
76,611 + HMPREF1078_RS07685 0.49 +0.6
76,626 + HMPREF1078_RS07685 0.50 +0.9
76,627 - HMPREF1078_RS07685 0.50 +0.8
76,627 - HMPREF1078_RS07685 0.50 -0.0
76,662 - HMPREF1078_RS07685 0.53 -0.7
76,666 + HMPREF1078_RS07685 0.54 +0.9
76,667 - HMPREF1078_RS07685 0.54 +0.1
76,687 - HMPREF1078_RS07685 0.56 +0.4
76,687 - HMPREF1078_RS07685 0.56 +0.5
76,831 - HMPREF1078_RS07685 0.69 +0.5
76,921 - HMPREF1078_RS07685 0.77 -1.6
76,925 + HMPREF1078_RS07685 0.77 +0.6
76,926 - HMPREF1078_RS07685 0.77 +0.5
76,960 - HMPREF1078_RS07685 0.80 -0.9
77,017 + HMPREF1078_RS07685 0.85 +0.0
77,121 + +0.8
77,121 + -1.2
77,156 + +1.2
77,163 - +0.2
77,166 - +0.2
77,171 + +0.2
77,173 + +0.2
77,174 - +3.0
77,273 - +0.0
77,273 - +0.9
77,315 - -0.5
77,415 + +0.1
77,448 + -1.9
77,557 + HMPREF1078_RS07690 0.12 +1.2
77,598 - HMPREF1078_RS07690 0.13 +0.3
77,734 - HMPREF1078_RS07690 0.18 +0.6
77,744 + HMPREF1078_RS07690 0.18 +1.0
77,744 + HMPREF1078_RS07690 0.18 -0.9
77,745 - HMPREF1078_RS07690 0.18 +0.8
77,745 - HMPREF1078_RS07690 0.18 +0.4
77,896 + HMPREF1078_RS07690 0.23 +0.8
77,897 - HMPREF1078_RS07690 0.23 -1.6
77,966 - HMPREF1078_RS07690 0.25 -0.0
77,966 - HMPREF1078_RS07690 0.25 -0.0
77,999 - HMPREF1078_RS07690 0.26 +1.7
78,055 + HMPREF1078_RS07690 0.28 -0.3
78,157 - HMPREF1078_RS07690 0.31 -0.3
78,252 - HMPREF1078_RS07690 0.34 +1.3
78,363 - HMPREF1078_RS07690 0.38 -0.1
78,491 + HMPREF1078_RS07690 0.42 +0.3
78,491 + HMPREF1078_RS07690 0.42 +0.5
78,492 - HMPREF1078_RS07690 0.42 +0.5
78,533 - HMPREF1078_RS07690 0.43 +0.5
78,533 - HMPREF1078_RS07690 0.43 -0.7
78,587 - HMPREF1078_RS07690 0.45 +0.8
78,587 - HMPREF1078_RS07690 0.45 -0.4
78,587 - HMPREF1078_RS07690 0.45 +0.3
78,653 + HMPREF1078_RS07690 0.47 +0.1
78,654 - HMPREF1078_RS07690 0.47 -0.2
78,805 + HMPREF1078_RS07690 0.52 -1.0
78,843 - HMPREF1078_RS07690 0.53 +0.4
78,994 - HMPREF1078_RS07690 0.58 +0.1
78,994 - HMPREF1078_RS07690 0.58 -0.8
78,994 - HMPREF1078_RS07690 0.58 +2.5
79,053 + HMPREF1078_RS07690 0.60 +0.4
79,054 - HMPREF1078_RS07690 0.60 +0.6
79,054 - HMPREF1078_RS07690 0.60 -1.4
79,101 - HMPREF1078_RS07690 0.61 -0.1
79,140 + HMPREF1078_RS07690 0.63 +0.3
79,163 - HMPREF1078_RS07690 0.63 +0.1
79,329 + HMPREF1078_RS07690 0.69 -0.8
79,330 - HMPREF1078_RS07690 0.69 -1.4
79,350 + HMPREF1078_RS07690 0.69 +1.2
79,351 - HMPREF1078_RS07690 0.69 -0.1
79,420 + HMPREF1078_RS07690 0.72 -0.6
79,421 - HMPREF1078_RS07690 0.72 -1.6
79,426 - HMPREF1078_RS07690 0.72 -0.8
79,426 - HMPREF1078_RS07690 0.72 -0.9
79,429 - HMPREF1078_RS07690 0.72 +0.0
79,429 - HMPREF1078_RS07690 0.72 -0.7
79,429 - HMPREF1078_RS07690 0.72 +0.5
79,431 - HMPREF1078_RS07690 0.72 +0.9
79,444 - HMPREF1078_RS07690 0.72 +0.9
79,447 + HMPREF1078_RS07690 0.72 +0.7
79,448 - HMPREF1078_RS07690 0.72 +1.1
79,472 + HMPREF1078_RS07690 0.73 +0.2
79,473 - HMPREF1078_RS07690 0.73 -1.3
79,476 + HMPREF1078_RS07690 0.73 +0.4
79,483 + HMPREF1078_RS07690 0.74 +1.2
79,519 + HMPREF1078_RS07690 0.75 +0.4
79,626 + HMPREF1078_RS07690 0.78 +0.2
79,627 - HMPREF1078_RS07690 0.78 -0.3
79,628 + HMPREF1078_RS07690 0.78 +0.6
79,628 + HMPREF1078_RS07690 0.78 +0.7
79,628 + HMPREF1078_RS07690 0.78 +0.4
79,629 - HMPREF1078_RS07690 0.78 -0.1
79,629 - HMPREF1078_RS07690 0.78 +0.5
79,629 - HMPREF1078_RS07690 0.78 +0.6
79,629 - HMPREF1078_RS07690 0.78 -0.7
79,631 + HMPREF1078_RS07690 0.78 -1.2
79,631 + HMPREF1078_RS07690 0.78 -0.5
79,632 - HMPREF1078_RS07690 0.78 +0.3
79,632 - HMPREF1078_RS07690 0.78 +0.2
79,632 - HMPREF1078_RS07690 0.78 -0.4
79,632 - HMPREF1078_RS07690 0.78 -0.2
79,635 + HMPREF1078_RS07690 0.78 +1.8
79,635 + HMPREF1078_RS07690 0.78 +0.2
79,635 + HMPREF1078_RS07690 0.78 -0.2
79,636 - HMPREF1078_RS07690 0.78 +0.1
79,636 - HMPREF1078_RS07690 0.78 +0.5
79,636 - HMPREF1078_RS07690 0.78 -0.0
79,636 - HMPREF1078_RS07690 0.78 +0.2
79,636 - HMPREF1078_RS07690 0.78 +1.0
79,636 - HMPREF1078_RS07690 0.78 -0.6
79,636 - HMPREF1078_RS07690 0.78 -0.5
79,637 + HMPREF1078_RS07690 0.78 +0.1
79,638 - HMPREF1078_RS07690 0.78 +1.5
79,661 - HMPREF1078_RS07690 0.79 -0.4
79,674 + HMPREF1078_RS07690 0.80 -2.1
79,676 + HMPREF1078_RS07690 0.80 -0.4
79,676 + HMPREF1078_RS07690 0.80 -0.7
79,715 - HMPREF1078_RS07690 0.81 +0.8
79,726 + HMPREF1078_RS07690 0.81 -0.6
79,733 + HMPREF1078_RS07690 0.82 -2.5
79,950 + HMPREF1078_RS07690 0.88 +0.6
79,951 - HMPREF1078_RS07690 0.89 +1.1
79,951 - HMPREF1078_RS07690 0.89 -0.8
79,951 - HMPREF1078_RS07690 0.89 +0.1
79,953 - HMPREF1078_RS07690 0.89 +0.5
80,028 + -0.9
80,235 - -0.8
80,263 + +0.9
80,263 + -0.3
80,279 - +0.4
80,442 + -0.6
80,445 - -2.1

Or see this region's nucleotide sequence