Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00855

Experiment: ABB 1 x (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS00850 and HMPREF1078_RS00855 are separated by 72 nucleotidesHMPREF1078_RS00855 and HMPREF1078_RS00860 overlap by 14 nucleotides HMPREF1078_RS00850: HMPREF1078_RS00850 - hypothetical protein, at 202,216 to 203,409 _RS00850 HMPREF1078_RS00855: HMPREF1078_RS00855 - Na+/H+ antiporter NhaA, at 203,482 to 204,846 _RS00855 HMPREF1078_RS00860: HMPREF1078_RS00860 - aldo/keto reductase, at 204,833 to 205,720 _RS00860 Position (kb) 203 204 205Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 202.572 kb on + strand, within HMPREF1078_RS00850at 202.574 kb on + strand, within HMPREF1078_RS00850at 202.574 kb on + strand, within HMPREF1078_RS00850at 202.574 kb on + strand, within HMPREF1078_RS00850at 202.575 kb on - strand, within HMPREF1078_RS00850at 202.575 kb on - strand, within HMPREF1078_RS00850at 202.581 kb on + strand, within HMPREF1078_RS00850at 202.619 kb on + strand, within HMPREF1078_RS00850at 202.621 kb on + strand, within HMPREF1078_RS00850at 202.621 kb on + strand, within HMPREF1078_RS00850at 202.621 kb on + strand, within HMPREF1078_RS00850at 202.621 kb on + strand, within HMPREF1078_RS00850at 202.621 kb on + strand, within HMPREF1078_RS00850at 202.622 kb on - strand, within HMPREF1078_RS00850at 202.631 kb on + strand, within HMPREF1078_RS00850at 202.632 kb on - strand, within HMPREF1078_RS00850at 202.679 kb on + strand, within HMPREF1078_RS00850at 202.700 kb on + strand, within HMPREF1078_RS00850at 202.700 kb on + strand, within HMPREF1078_RS00850at 202.725 kb on + strand, within HMPREF1078_RS00850at 202.780 kb on + strand, within HMPREF1078_RS00850at 202.781 kb on - strand, within HMPREF1078_RS00850at 202.867 kb on + strand, within HMPREF1078_RS00850at 202.867 kb on + strand, within HMPREF1078_RS00850at 202.873 kb on + strand, within HMPREF1078_RS00850at 202.873 kb on + strand, within HMPREF1078_RS00850at 202.873 kb on + strand, within HMPREF1078_RS00850at 202.897 kb on - strand, within HMPREF1078_RS00850at 202.925 kb on + strand, within HMPREF1078_RS00850at 202.926 kb on - strand, within HMPREF1078_RS00850at 202.926 kb on - strand, within HMPREF1078_RS00850at 202.929 kb on + strand, within HMPREF1078_RS00850at 202.929 kb on + strand, within HMPREF1078_RS00850at 202.929 kb on + strand, within HMPREF1078_RS00850at 202.930 kb on - strand, within HMPREF1078_RS00850at 202.944 kb on + strand, within HMPREF1078_RS00850at 202.944 kb on + strand, within HMPREF1078_RS00850at 202.944 kb on + strand, within HMPREF1078_RS00850at 202.944 kb on + strand, within HMPREF1078_RS00850at 202.944 kb on + strand, within HMPREF1078_RS00850at 202.944 kb on + strand, within HMPREF1078_RS00850at 202.944 kb on + strand, within HMPREF1078_RS00850at 202.944 kb on + strand, within HMPREF1078_RS00850at 202.944 kb on + strand, within HMPREF1078_RS00850at 202.945 kb on - strand, within HMPREF1078_RS00850at 202.945 kb on - strand, within HMPREF1078_RS00850at 202.945 kb on - strand, within HMPREF1078_RS00850at 202.956 kb on + strand, within HMPREF1078_RS00850at 203.001 kb on + strand, within HMPREF1078_RS00850at 203.001 kb on + strand, within HMPREF1078_RS00850at 203.001 kb on + strand, within HMPREF1078_RS00850at 203.002 kb on - strand, within HMPREF1078_RS00850at 203.013 kb on - strand, within HMPREF1078_RS00850at 203.229 kb on + strand, within HMPREF1078_RS00850at 203.256 kb on + strand, within HMPREF1078_RS00850at 203.262 kb on + strand, within HMPREF1078_RS00850at 203.318 kb on + strandat 203.336 kb on + strandat 203.345 kb on + strandat 203.346 kb on - strandat 203.383 kb on + strandat 203.384 kb on - strandat 203.408 kb on - strandat 203.464 kb on + strandat 203.472 kb on + strandat 203.477 kb on - strandat 203.477 kb on - strandat 203.482 kb on - strandat 203.487 kb on + strandat 203.488 kb on - strandat 203.488 kb on - strandat 203.508 kb on + strandat 203.529 kb on + strandat 203.529 kb on + strandat 203.550 kb on + strandat 203.551 kb on - strandat 203.551 kb on - strandat 203.551 kb on - strandat 203.551 kb on - strandat 203.558 kb on + strandat 203.581 kb on - strandat 203.585 kb on + strandat 203.585 kb on + strandat 203.586 kb on - strandat 203.586 kb on - strandat 203.614 kb on + strandat 203.614 kb on + strandat 203.615 kb on - strandat 203.627 kb on + strand, within HMPREF1078_RS00855at 203.628 kb on - strand, within HMPREF1078_RS00855at 203.652 kb on - strand, within HMPREF1078_RS00855at 203.656 kb on - strand, within HMPREF1078_RS00855at 203.670 kb on + strand, within HMPREF1078_RS00855at 203.757 kb on + strand, within HMPREF1078_RS00855at 204.024 kb on + strand, within HMPREF1078_RS00855at 204.040 kb on + strand, within HMPREF1078_RS00855at 204.098 kb on + strand, within HMPREF1078_RS00855at 204.099 kb on - strand, within HMPREF1078_RS00855at 204.099 kb on - strand, within HMPREF1078_RS00855at 204.100 kb on + strand, within HMPREF1078_RS00855at 204.100 kb on + strand, within HMPREF1078_RS00855at 204.100 kb on + strand, within HMPREF1078_RS00855at 204.101 kb on - strand, within HMPREF1078_RS00855at 204.101 kb on - strand, within HMPREF1078_RS00855at 204.104 kb on + strand, within HMPREF1078_RS00855at 204.104 kb on + strand, within HMPREF1078_RS00855at 204.105 kb on - strand, within HMPREF1078_RS00855at 204.105 kb on - strand, within HMPREF1078_RS00855at 204.105 kb on - strand, within HMPREF1078_RS00855at 204.139 kb on + strand, within HMPREF1078_RS00855at 204.146 kb on + strand, within HMPREF1078_RS00855at 204.146 kb on + strand, within HMPREF1078_RS00855at 204.149 kb on + strand, within HMPREF1078_RS00855at 204.149 kb on + strand, within HMPREF1078_RS00855at 204.201 kb on - strand, within HMPREF1078_RS00855at 204.299 kb on - strand, within HMPREF1078_RS00855at 204.367 kb on - strand, within HMPREF1078_RS00855at 204.440 kb on - strand, within HMPREF1078_RS00855at 204.564 kb on + strand, within HMPREF1078_RS00855at 204.565 kb on - strand, within HMPREF1078_RS00855at 204.582 kb on + strand, within HMPREF1078_RS00855at 204.582 kb on + strand, within HMPREF1078_RS00855at 204.583 kb on - strand, within HMPREF1078_RS00855at 204.607 kb on - strand, within HMPREF1078_RS00855at 204.607 kb on - strand, within HMPREF1078_RS00855at 204.607 kb on - strand, within HMPREF1078_RS00855at 204.639 kb on - strand, within HMPREF1078_RS00855at 204.672 kb on + strand, within HMPREF1078_RS00855at 204.677 kb on + strand, within HMPREF1078_RS00855at 204.677 kb on + strand, within HMPREF1078_RS00855at 204.734 kb on + strandat 204.759 kb on - strandat 204.800 kb on + strandat 204.804 kb on - strandat 204.873 kb on + strandat 204.883 kb on - strandat 204.912 kb on + strandat 204.912 kb on + strandat 204.913 kb on - strandat 204.913 kb on - strandat 204.924 kb on + strand, within HMPREF1078_RS00860at 204.924 kb on + strand, within HMPREF1078_RS00860at 204.925 kb on - strand, within HMPREF1078_RS00860at 204.925 kb on - strand, within HMPREF1078_RS00860at 204.936 kb on + strand, within HMPREF1078_RS00860at 204.986 kb on - strand, within HMPREF1078_RS00860at 204.987 kb on + strand, within HMPREF1078_RS00860at 204.987 kb on + strand, within HMPREF1078_RS00860at 204.987 kb on + strand, within HMPREF1078_RS00860at 204.992 kb on - strand, within HMPREF1078_RS00860at 205.019 kb on + strand, within HMPREF1078_RS00860at 205.051 kb on + strand, within HMPREF1078_RS00860at 205.066 kb on - strand, within HMPREF1078_RS00860at 205.114 kb on + strand, within HMPREF1078_RS00860at 205.118 kb on + strand, within HMPREF1078_RS00860at 205.118 kb on + strand, within HMPREF1078_RS00860at 205.118 kb on + strand, within HMPREF1078_RS00860at 205.118 kb on + strand, within HMPREF1078_RS00860at 205.120 kb on - strand, within HMPREF1078_RS00860at 205.300 kb on + strand, within HMPREF1078_RS00860at 205.301 kb on - strand, within HMPREF1078_RS00860at 205.339 kb on + strand, within HMPREF1078_RS00860at 205.484 kb on - strand, within HMPREF1078_RS00860at 205.719 kb on - strandat 205.728 kb on - strandat 205.728 kb on - strandat 205.764 kb on - strandat 205.837 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ABB 1 x (C)
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202,572 + HMPREF1078_RS00850 0.30 -0.0
202,574 + HMPREF1078_RS00850 0.30 +0.4
202,574 + HMPREF1078_RS00850 0.30 -0.3
202,574 + HMPREF1078_RS00850 0.30 -3.8
202,575 - HMPREF1078_RS00850 0.30 -0.8
202,575 - HMPREF1078_RS00850 0.30 -0.8
202,581 + HMPREF1078_RS00850 0.31 -0.9
202,619 + HMPREF1078_RS00850 0.34 -0.0
202,621 + HMPREF1078_RS00850 0.34 +0.2
202,621 + HMPREF1078_RS00850 0.34 -1.1
202,621 + HMPREF1078_RS00850 0.34 +1.0
202,621 + HMPREF1078_RS00850 0.34 -0.7
202,621 + HMPREF1078_RS00850 0.34 +1.0
202,622 - HMPREF1078_RS00850 0.34 +0.6
202,631 + HMPREF1078_RS00850 0.35 +0.0
202,632 - HMPREF1078_RS00850 0.35 +0.3
202,679 + HMPREF1078_RS00850 0.39 -0.1
202,700 + HMPREF1078_RS00850 0.41 -0.3
202,700 + HMPREF1078_RS00850 0.41 +0.5
202,725 + HMPREF1078_RS00850 0.43 -0.4
202,780 + HMPREF1078_RS00850 0.47 -0.3
202,781 - HMPREF1078_RS00850 0.47 -0.3
202,867 + HMPREF1078_RS00850 0.55 +1.5
202,867 + HMPREF1078_RS00850 0.55 -1.4
202,873 + HMPREF1078_RS00850 0.55 -0.1
202,873 + HMPREF1078_RS00850 0.55 -1.3
202,873 + HMPREF1078_RS00850 0.55 -0.5
202,897 - HMPREF1078_RS00850 0.57 +0.3
202,925 + HMPREF1078_RS00850 0.59 -0.6
202,926 - HMPREF1078_RS00850 0.59 -0.2
202,926 - HMPREF1078_RS00850 0.59 -2.8
202,929 + HMPREF1078_RS00850 0.60 -1.3
202,929 + HMPREF1078_RS00850 0.60 +1.0
202,929 + HMPREF1078_RS00850 0.60 +0.4
202,930 - HMPREF1078_RS00850 0.60 -0.4
202,944 + HMPREF1078_RS00850 0.61 +0.2
202,944 + HMPREF1078_RS00850 0.61 +0.6
202,944 + HMPREF1078_RS00850 0.61 +0.3
202,944 + HMPREF1078_RS00850 0.61 +0.2
202,944 + HMPREF1078_RS00850 0.61 -2.4
202,944 + HMPREF1078_RS00850 0.61 +0.6
202,944 + HMPREF1078_RS00850 0.61 +0.1
202,944 + HMPREF1078_RS00850 0.61 +0.3
202,944 + HMPREF1078_RS00850 0.61 +1.0
202,945 - HMPREF1078_RS00850 0.61 -0.1
202,945 - HMPREF1078_RS00850 0.61 +0.2
202,945 - HMPREF1078_RS00850 0.61 -0.1
202,956 + HMPREF1078_RS00850 0.62 -1.4
203,001 + HMPREF1078_RS00850 0.66 -1.0
203,001 + HMPREF1078_RS00850 0.66 -0.1
203,001 + HMPREF1078_RS00850 0.66 -1.7
203,002 - HMPREF1078_RS00850 0.66 +0.4
203,013 - HMPREF1078_RS00850 0.67 +0.2
203,229 + HMPREF1078_RS00850 0.85 -0.0
203,256 + HMPREF1078_RS00850 0.87 -1.4
203,262 + HMPREF1078_RS00850 0.88 -0.6
203,318 + +0.4
203,336 + +0.1
203,345 + -1.6
203,346 - +0.4
203,383 + +1.2
203,384 - -1.1
203,408 - -1.1
203,464 + +1.2
203,472 + +0.1
203,477 - +0.0
203,477 - +0.1
203,482 - -0.5
203,487 + +0.3
203,488 - -0.5
203,488 - +0.9
203,508 + +0.3
203,529 + +1.4
203,529 + +0.3
203,550 + -1.2
203,551 - -0.5
203,551 - -0.6
203,551 - -1.1
203,551 - +0.8
203,558 + +0.7
203,581 - -2.6
203,585 + +0.6
203,585 + +1.4
203,586 - -0.4
203,586 - +0.6
203,614 + -0.0
203,614 + -1.7
203,615 - -1.7
203,627 + HMPREF1078_RS00855 0.11 -0.5
203,628 - HMPREF1078_RS00855 0.11 +0.3
203,652 - HMPREF1078_RS00855 0.12 +0.6
203,656 - HMPREF1078_RS00855 0.13 +0.5
203,670 + HMPREF1078_RS00855 0.14 -1.9
203,757 + HMPREF1078_RS00855 0.20 -2.8
204,024 + HMPREF1078_RS00855 0.40 -0.2
204,040 + HMPREF1078_RS00855 0.41 -0.1
204,098 + HMPREF1078_RS00855 0.45 +1.7
204,099 - HMPREF1078_RS00855 0.45 +0.7
204,099 - HMPREF1078_RS00855 0.45 -1.1
204,100 + HMPREF1078_RS00855 0.45 +1.6
204,100 + HMPREF1078_RS00855 0.45 +0.2
204,100 + HMPREF1078_RS00855 0.45 +0.0
204,101 - HMPREF1078_RS00855 0.45 +0.5
204,101 - HMPREF1078_RS00855 0.45 +0.2
204,104 + HMPREF1078_RS00855 0.46 +1.3
204,104 + HMPREF1078_RS00855 0.46 -1.8
204,105 - HMPREF1078_RS00855 0.46 +0.2
204,105 - HMPREF1078_RS00855 0.46 +0.2
204,105 - HMPREF1078_RS00855 0.46 -0.0
204,139 + HMPREF1078_RS00855 0.48 +0.4
204,146 + HMPREF1078_RS00855 0.49 -0.7
204,146 + HMPREF1078_RS00855 0.49 +0.6
204,149 + HMPREF1078_RS00855 0.49 +0.5
204,149 + HMPREF1078_RS00855 0.49 -0.4
204,201 - HMPREF1078_RS00855 0.53 +0.6
204,299 - HMPREF1078_RS00855 0.60 +0.4
204,367 - HMPREF1078_RS00855 0.65 -0.9
204,440 - HMPREF1078_RS00855 0.70 +0.9
204,564 + HMPREF1078_RS00855 0.79 +1.1
204,565 - HMPREF1078_RS00855 0.79 +0.3
204,582 + HMPREF1078_RS00855 0.81 -0.2
204,582 + HMPREF1078_RS00855 0.81 -0.9
204,583 - HMPREF1078_RS00855 0.81 -0.1
204,607 - HMPREF1078_RS00855 0.82 -0.4
204,607 - HMPREF1078_RS00855 0.82 +1.5
204,607 - HMPREF1078_RS00855 0.82 +0.3
204,639 - HMPREF1078_RS00855 0.85 +0.3
204,672 + HMPREF1078_RS00855 0.87 +0.7
204,677 + HMPREF1078_RS00855 0.88 -0.7
204,677 + HMPREF1078_RS00855 0.88 -1.8
204,734 + +0.4
204,759 - +0.9
204,800 + -0.9
204,804 - +0.1
204,873 + -0.3
204,883 - +0.3
204,912 + -0.1
204,912 + -0.4
204,913 - -1.1
204,913 - -0.4
204,924 + HMPREF1078_RS00860 0.10 -2.0
204,924 + HMPREF1078_RS00860 0.10 +0.2
204,925 - HMPREF1078_RS00860 0.10 -0.9
204,925 - HMPREF1078_RS00860 0.10 -0.1
204,936 + HMPREF1078_RS00860 0.12 +0.1
204,986 - HMPREF1078_RS00860 0.17 -0.4
204,987 + HMPREF1078_RS00860 0.17 -1.4
204,987 + HMPREF1078_RS00860 0.17 -1.7
204,987 + HMPREF1078_RS00860 0.17 -0.1
204,992 - HMPREF1078_RS00860 0.18 +0.1
205,019 + HMPREF1078_RS00860 0.21 -0.2
205,051 + HMPREF1078_RS00860 0.25 -0.1
205,066 - HMPREF1078_RS00860 0.26 -0.3
205,114 + HMPREF1078_RS00860 0.32 +0.5
205,118 + HMPREF1078_RS00860 0.32 -0.6
205,118 + HMPREF1078_RS00860 0.32 -2.2
205,118 + HMPREF1078_RS00860 0.32 +0.2
205,118 + HMPREF1078_RS00860 0.32 -0.9
205,120 - HMPREF1078_RS00860 0.32 +1.1
205,300 + HMPREF1078_RS00860 0.53 -0.4
205,301 - HMPREF1078_RS00860 0.53 -0.3
205,339 + HMPREF1078_RS00860 0.57 +0.3
205,484 - HMPREF1078_RS00860 0.73 -1.0
205,719 - -0.1
205,728 - +0.2
205,728 - +0.6
205,764 - +2.2
205,837 - -1.4

Or see this region's nucleotide sequence