Experiment: D-Raffinose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13540 and HMPREF1078_RS13545 are separated by 179 nucleotides HMPREF1078_RS13545 and HMPREF1078_RS13550 are separated by 176 nucleotides
HMPREF1078_RS13540: HMPREF1078_RS13540 - glycosyltransferase, at 154,258 to 155,436
_RS13540
HMPREF1078_RS13545: HMPREF1078_RS13545 - diaminopimelate decarboxylase, at 155,616 to 156,776
_RS13545
HMPREF1078_RS13550: HMPREF1078_RS13550 - aspartate kinase, at 156,953 to 158,272
_RS13550
Position (kb) 155
156
157 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 154.628 kb on - strand, within HMPREF1078_RS13540 at 154.628 kb on - strand, within HMPREF1078_RS13540 at 154.641 kb on + strand, within HMPREF1078_RS13540 at 154.666 kb on + strand, within HMPREF1078_RS13540 at 154.666 kb on + strand, within HMPREF1078_RS13540 at 154.666 kb on + strand, within HMPREF1078_RS13540 at 154.667 kb on - strand, within HMPREF1078_RS13540 at 154.674 kb on + strand, within HMPREF1078_RS13540 at 154.675 kb on - strand, within HMPREF1078_RS13540 at 154.773 kb on + strand, within HMPREF1078_RS13540 at 154.773 kb on + strand, within HMPREF1078_RS13540 at 154.841 kb on - strand, within HMPREF1078_RS13540 at 154.841 kb on - strand, within HMPREF1078_RS13540 at 154.863 kb on - strand, within HMPREF1078_RS13540 at 154.916 kb on - strand, within HMPREF1078_RS13540 at 154.921 kb on - strand, within HMPREF1078_RS13540 at 154.940 kb on + strand, within HMPREF1078_RS13540 at 154.940 kb on + strand, within HMPREF1078_RS13540 at 154.940 kb on + strand, within HMPREF1078_RS13540 at 154.941 kb on - strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.087 kb on + strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.088 kb on - strand, within HMPREF1078_RS13540 at 155.093 kb on + strand, within HMPREF1078_RS13540 at 155.109 kb on - strand, within HMPREF1078_RS13540 at 155.225 kb on - strand, within HMPREF1078_RS13540 at 155.249 kb on + strand, within HMPREF1078_RS13540 at 155.323 kb on + strand at 155.324 kb on - strand at 155.351 kb on + strand at 155.356 kb on + strand at 155.356 kb on + strand at 155.357 kb on - strand at 155.362 kb on + strand at 155.363 kb on - strand at 155.368 kb on - strand at 155.368 kb on - strand at 155.418 kb on + strand at 155.419 kb on - strand at 155.444 kb on - strand at 155.460 kb on + strand at 155.489 kb on + strand at 155.490 kb on - strand at 155.491 kb on + strand at 155.518 kb on + strand at 155.519 kb on - strand at 155.519 kb on - strand at 155.547 kb on - strand at 155.597 kb on + strand at 155.597 kb on + strand at 155.597 kb on + strand at 155.611 kb on - strand at 155.617 kb on + strand at 155.617 kb on + strand at 155.618 kb on - strand at 155.618 kb on - strand at 155.660 kb on + strand at 155.661 kb on - strand at 155.662 kb on + strand at 155.663 kb on - strand at 155.663 kb on - strand at 155.676 kb on + strand at 155.677 kb on - strand at 155.794 kb on + strand, within HMPREF1078_RS13545 at 155.795 kb on - strand, within HMPREF1078_RS13545 at 155.840 kb on - strand, within HMPREF1078_RS13545 at 155.849 kb on - strand, within HMPREF1078_RS13545 at 155.849 kb on - strand, within HMPREF1078_RS13545 at 155.920 kb on - strand, within HMPREF1078_RS13545 at 155.920 kb on - strand, within HMPREF1078_RS13545 at 155.923 kb on + strand, within HMPREF1078_RS13545 at 155.923 kb on + strand, within HMPREF1078_RS13545 at 155.923 kb on + strand, within HMPREF1078_RS13545 at 155.924 kb on - strand, within HMPREF1078_RS13545 at 155.924 kb on - strand, within HMPREF1078_RS13545 at 155.924 kb on - strand, within HMPREF1078_RS13545 at 155.925 kb on + strand, within HMPREF1078_RS13545 at 155.928 kb on + strand, within HMPREF1078_RS13545 at 155.928 kb on + strand, within HMPREF1078_RS13545 at 156.012 kb on + strand, within HMPREF1078_RS13545 at 156.013 kb on - strand, within HMPREF1078_RS13545 at 156.013 kb on - strand, within HMPREF1078_RS13545 at 156.120 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.188 kb on + strand, within HMPREF1078_RS13545 at 156.189 kb on - strand, within HMPREF1078_RS13545 at 156.189 kb on - strand, within HMPREF1078_RS13545 at 156.189 kb on - strand, within HMPREF1078_RS13545 at 156.195 kb on - strand, within HMPREF1078_RS13545 at 156.195 kb on - strand, within HMPREF1078_RS13545 at 156.195 kb on - strand, within HMPREF1078_RS13545 at 156.236 kb on + strand, within HMPREF1078_RS13545 at 156.236 kb on + strand, within HMPREF1078_RS13545 at 156.262 kb on - strand, within HMPREF1078_RS13545 at 156.262 kb on - strand, within HMPREF1078_RS13545 at 156.335 kb on + strand, within HMPREF1078_RS13545 at 156.336 kb on - strand, within HMPREF1078_RS13545 at 156.336 kb on - strand, within HMPREF1078_RS13545 at 156.336 kb on - strand, within HMPREF1078_RS13545 at 156.346 kb on - strand, within HMPREF1078_RS13545 at 156.359 kb on + strand, within HMPREF1078_RS13545 at 156.360 kb on - strand, within HMPREF1078_RS13545 at 156.360 kb on - strand, within HMPREF1078_RS13545 at 156.436 kb on - strand, within HMPREF1078_RS13545 at 156.436 kb on - strand, within HMPREF1078_RS13545 at 156.586 kb on + strand, within HMPREF1078_RS13545 at 156.587 kb on - strand, within HMPREF1078_RS13545 at 156.596 kb on + strand, within HMPREF1078_RS13545 at 156.600 kb on - strand, within HMPREF1078_RS13545 at 156.600 kb on - strand, within HMPREF1078_RS13545 at 156.637 kb on + strand, within HMPREF1078_RS13545 at 156.638 kb on - strand, within HMPREF1078_RS13545 at 156.638 kb on - strand, within HMPREF1078_RS13545 at 156.655 kb on + strand, within HMPREF1078_RS13545 at 156.680 kb on + strand at 156.705 kb on + strand at 156.705 kb on + strand at 156.706 kb on - strand at 156.708 kb on - strand at 156.713 kb on - strand at 156.768 kb on + strand at 156.769 kb on - strand at 156.771 kb on + strand at 156.811 kb on - strand at 156.812 kb on + strand at 156.813 kb on - strand at 156.813 kb on - strand at 156.813 kb on - strand at 156.816 kb on + strand at 156.816 kb on + strand at 156.817 kb on - strand at 156.832 kb on - strand at 156.843 kb on + strand at 156.843 kb on + strand at 156.844 kb on - strand at 156.847 kb on + strand at 156.847 kb on + strand at 156.848 kb on - strand at 156.922 kb on - strand at 156.954 kb on + strand at 156.962 kb on - strand at 156.972 kb on - strand at 156.983 kb on + strand at 157.038 kb on + strand at 157.039 kb on - strand at 157.039 kb on - strand at 157.053 kb on + strand at 157.053 kb on + strand at 157.096 kb on + strand, within HMPREF1078_RS13550 at 157.096 kb on + strand, within HMPREF1078_RS13550 at 157.096 kb on + strand, within HMPREF1078_RS13550 at 157.118 kb on - strand, within HMPREF1078_RS13550 at 157.137 kb on - strand, within HMPREF1078_RS13550 at 157.147 kb on + strand, within HMPREF1078_RS13550 at 157.156 kb on + strand, within HMPREF1078_RS13550 at 157.156 kb on + strand, within HMPREF1078_RS13550 at 157.157 kb on - strand, within HMPREF1078_RS13550 at 157.247 kb on + strand, within HMPREF1078_RS13550 at 157.336 kb on + strand, within HMPREF1078_RS13550 at 157.337 kb on - strand, within HMPREF1078_RS13550 at 157.337 kb on - strand, within HMPREF1078_RS13550 at 157.337 kb on - strand, within HMPREF1078_RS13550 at 157.366 kb on + strand, within HMPREF1078_RS13550 at 157.472 kb on - strand, within HMPREF1078_RS13550 at 157.533 kb on - strand, within HMPREF1078_RS13550 at 157.533 kb on - strand, within HMPREF1078_RS13550 at 157.616 kb on + strand, within HMPREF1078_RS13550 at 157.629 kb on - strand, within HMPREF1078_RS13550 at 157.629 kb on - strand, within HMPREF1078_RS13550 at 157.732 kb on + strand, within HMPREF1078_RS13550 at 157.734 kb on + strand, within HMPREF1078_RS13550 at 157.735 kb on - strand, within HMPREF1078_RS13550 at 157.776 kb on - strand, within HMPREF1078_RS13550
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose 10 mg/mL (C) remove 154,628 - HMPREF1078_RS13540 0.31 +2.8 154,628 - HMPREF1078_RS13540 0.31 -0.7 154,641 + HMPREF1078_RS13540 0.32 +0.3 154,666 + HMPREF1078_RS13540 0.35 -0.4 154,666 + HMPREF1078_RS13540 0.35 -0.3 154,666 + HMPREF1078_RS13540 0.35 -0.7 154,667 - HMPREF1078_RS13540 0.35 +0.2 154,674 + HMPREF1078_RS13540 0.35 -0.3 154,675 - HMPREF1078_RS13540 0.35 +0.3 154,773 + HMPREF1078_RS13540 0.44 -0.6 154,773 + HMPREF1078_RS13540 0.44 +2.2 154,841 - HMPREF1078_RS13540 0.49 -1.3 154,841 - HMPREF1078_RS13540 0.49 -1.4 154,863 - HMPREF1078_RS13540 0.51 +0.0 154,916 - HMPREF1078_RS13540 0.56 -0.1 154,921 - HMPREF1078_RS13540 0.56 +0.1 154,940 + HMPREF1078_RS13540 0.58 -0.0 154,940 + HMPREF1078_RS13540 0.58 +0.3 154,940 + HMPREF1078_RS13540 0.58 -0.4 154,941 - HMPREF1078_RS13540 0.58 -0.0 155,087 + HMPREF1078_RS13540 0.70 -0.1 155,087 + HMPREF1078_RS13540 0.70 +1.0 155,087 + HMPREF1078_RS13540 0.70 -0.8 155,087 + HMPREF1078_RS13540 0.70 +0.7 155,087 + HMPREF1078_RS13540 0.70 -2.0 155,087 + HMPREF1078_RS13540 0.70 -0.4 155,087 + HMPREF1078_RS13540 0.70 -1.6 155,087 + HMPREF1078_RS13540 0.70 -0.2 155,087 + HMPREF1078_RS13540 0.70 -0.6 155,087 + HMPREF1078_RS13540 0.70 -0.2 155,087 + HMPREF1078_RS13540 0.70 -2.0 155,087 + HMPREF1078_RS13540 0.70 -1.2 155,087 + HMPREF1078_RS13540 0.70 -3.6 155,087 + HMPREF1078_RS13540 0.70 +0.1 155,087 + HMPREF1078_RS13540 0.70 -2.1 155,088 - HMPREF1078_RS13540 0.70 -0.8 155,088 - HMPREF1078_RS13540 0.70 -1.5 155,088 - HMPREF1078_RS13540 0.70 -1.5 155,088 - HMPREF1078_RS13540 0.70 -1.6 155,088 - HMPREF1078_RS13540 0.70 +1.6 155,088 - HMPREF1078_RS13540 0.70 -0.2 155,088 - HMPREF1078_RS13540 0.70 -0.1 155,088 - HMPREF1078_RS13540 0.70 -0.8 155,088 - HMPREF1078_RS13540 0.70 -0.5 155,088 - HMPREF1078_RS13540 0.70 -0.0 155,088 - HMPREF1078_RS13540 0.70 -0.1 155,088 - HMPREF1078_RS13540 0.70 -0.0 155,088 - HMPREF1078_RS13540 0.70 +0.2 155,088 - HMPREF1078_RS13540 0.70 +0.6 155,093 + HMPREF1078_RS13540 0.71 -0.2 155,109 - HMPREF1078_RS13540 0.72 +0.5 155,225 - HMPREF1078_RS13540 0.82 -1.0 155,249 + HMPREF1078_RS13540 0.84 -0.8 155,323 + -0.8 155,324 - -1.0 155,351 + -0.2 155,356 + -0.4 155,356 + -2.0 155,357 - +0.2 155,362 + +0.2 155,363 - -1.1 155,368 - -1.7 155,368 - +0.1 155,418 + +0.8 155,419 - -0.2 155,444 - -1.0 155,460 + +1.5 155,489 + -1.6 155,490 - -2.4 155,491 + -1.1 155,518 + +0.1 155,519 - +0.3 155,519 - -0.8 155,547 - +0.3 155,597 + -0.1 155,597 + -1.9 155,597 + -0.0 155,611 - -0.6 155,617 + -1.5 155,617 + -0.2 155,618 - +1.2 155,618 - -0.5 155,660 + -3.6 155,661 - -3.5 155,662 + -3.7 155,663 - -1.5 155,663 - -2.9 155,676 + -2.5 155,677 - -2.2 155,794 + HMPREF1078_RS13545 0.15 +0.5 155,795 - HMPREF1078_RS13545 0.15 -4.2 155,840 - HMPREF1078_RS13545 0.19 -4.0 155,849 - HMPREF1078_RS13545 0.20 -0.5 155,849 - HMPREF1078_RS13545 0.20 -2.5 155,920 - HMPREF1078_RS13545 0.26 -0.1 155,920 - HMPREF1078_RS13545 0.26 -2.2 155,923 + HMPREF1078_RS13545 0.26 -3.7 155,923 + HMPREF1078_RS13545 0.26 +0.1 155,923 + HMPREF1078_RS13545 0.26 -1.4 155,924 - HMPREF1078_RS13545 0.27 -4.0 155,924 - HMPREF1078_RS13545 0.27 -3.0 155,924 - HMPREF1078_RS13545 0.27 -2.1 155,925 + HMPREF1078_RS13545 0.27 -1.4 155,928 + HMPREF1078_RS13545 0.27 +1.9 155,928 + HMPREF1078_RS13545 0.27 -2.7 156,012 + HMPREF1078_RS13545 0.34 -1.4 156,013 - HMPREF1078_RS13545 0.34 -2.4 156,013 - HMPREF1078_RS13545 0.34 -1.7 156,120 + HMPREF1078_RS13545 0.43 -3.4 156,188 + HMPREF1078_RS13545 0.49 -3.1 156,188 + HMPREF1078_RS13545 0.49 -1.6 156,188 + HMPREF1078_RS13545 0.49 -3.0 156,188 + HMPREF1078_RS13545 0.49 -3.5 156,188 + HMPREF1078_RS13545 0.49 -2.0 156,188 + HMPREF1078_RS13545 0.49 -4.1 156,189 - HMPREF1078_RS13545 0.49 -3.8 156,189 - HMPREF1078_RS13545 0.49 -0.4 156,189 - HMPREF1078_RS13545 0.49 -2.2 156,195 - HMPREF1078_RS13545 0.50 -3.1 156,195 - HMPREF1078_RS13545 0.50 -1.6 156,195 - HMPREF1078_RS13545 0.50 -3.9 156,236 + HMPREF1078_RS13545 0.53 -4.2 156,236 + HMPREF1078_RS13545 0.53 -1.9 156,262 - HMPREF1078_RS13545 0.56 +0.5 156,262 - HMPREF1078_RS13545 0.56 -3.9 156,335 + HMPREF1078_RS13545 0.62 -3.3 156,336 - HMPREF1078_RS13545 0.62 -2.4 156,336 - HMPREF1078_RS13545 0.62 -3.3 156,336 - HMPREF1078_RS13545 0.62 -1.9 156,346 - HMPREF1078_RS13545 0.63 -4.7 156,359 + HMPREF1078_RS13545 0.64 -3.3 156,360 - HMPREF1078_RS13545 0.64 -4.2 156,360 - HMPREF1078_RS13545 0.64 -2.9 156,436 - HMPREF1078_RS13545 0.71 -2.6 156,436 - HMPREF1078_RS13545 0.71 -2.2 156,586 + HMPREF1078_RS13545 0.84 -1.6 156,587 - HMPREF1078_RS13545 0.84 -3.1 156,596 + HMPREF1078_RS13545 0.84 -2.9 156,600 - HMPREF1078_RS13545 0.85 -2.7 156,600 - HMPREF1078_RS13545 0.85 -4.2 156,637 + HMPREF1078_RS13545 0.88 -1.8 156,638 - HMPREF1078_RS13545 0.88 -4.2 156,638 - HMPREF1078_RS13545 0.88 -4.0 156,655 + HMPREF1078_RS13545 0.89 -1.5 156,680 + -4.0 156,705 + -4.8 156,705 + -3.1 156,706 - -0.5 156,708 - -3.5 156,713 - -1.0 156,768 + -3.5 156,769 - -3.7 156,771 + -3.0 156,811 - -0.2 156,812 + -0.4 156,813 - -3.4 156,813 - +0.1 156,813 - +1.2 156,816 + -2.3 156,816 + -0.7 156,817 - -1.0 156,832 - +0.0 156,843 + -0.1 156,843 + -3.7 156,844 - +1.6 156,847 + -2.0 156,847 + -1.4 156,848 - +0.6 156,922 - +0.0 156,954 + -3.5 156,962 - -2.3 156,972 - -1.5 156,983 + -1.5 157,038 + -2.6 157,039 - +0.5 157,039 - +1.1 157,053 + -3.1 157,053 + -3.9 157,096 + HMPREF1078_RS13550 0.11 -1.9 157,096 + HMPREF1078_RS13550 0.11 -2.8 157,096 + HMPREF1078_RS13550 0.11 -1.6 157,118 - HMPREF1078_RS13550 0.12 +1.0 157,137 - HMPREF1078_RS13550 0.14 +0.8 157,147 + HMPREF1078_RS13550 0.15 -1.5 157,156 + HMPREF1078_RS13550 0.15 -3.2 157,156 + HMPREF1078_RS13550 0.15 -3.8 157,157 - HMPREF1078_RS13550 0.15 +0.9 157,247 + HMPREF1078_RS13550 0.22 -1.4 157,336 + HMPREF1078_RS13550 0.29 +0.5 157,337 - HMPREF1078_RS13550 0.29 +0.2 157,337 - HMPREF1078_RS13550 0.29 +1.0 157,337 - HMPREF1078_RS13550 0.29 +1.0 157,366 + HMPREF1078_RS13550 0.31 -3.3 157,472 - HMPREF1078_RS13550 0.39 +0.8 157,533 - HMPREF1078_RS13550 0.44 -0.4 157,533 - HMPREF1078_RS13550 0.44 +1.4 157,616 + HMPREF1078_RS13550 0.50 -1.4 157,629 - HMPREF1078_RS13550 0.51 +0.8 157,629 - HMPREF1078_RS13550 0.51 +0.0 157,732 + HMPREF1078_RS13550 0.59 -2.7 157,734 + HMPREF1078_RS13550 0.59 -2.6 157,735 - HMPREF1078_RS13550 0.59 +0.8 157,776 - HMPREF1078_RS13550 0.62 -0.0
Or see this region's nucleotide sequence