Experiment: D-Raffinose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04555 and HMPREF1078_RS04560 are separated by 315 nucleotides HMPREF1078_RS04560 and HMPREF1078_RS04565 are separated by 13 nucleotides
HMPREF1078_RS04555: HMPREF1078_RS04555 - HAMP domain-containing sensor histidine kinase, at 143,627 to 145,180
_RS04555
HMPREF1078_RS04560: HMPREF1078_RS04560 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 145,496 to 146,320
_RS04560
HMPREF1078_RS04565: HMPREF1078_RS04565 - GNAT family N-acetyltransferase, at 146,334 to 147,299
_RS04565
Position (kb) 145
146
147 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 144.525 kb on - strand, within HMPREF1078_RS04555 at 144.536 kb on - strand, within HMPREF1078_RS04555 at 144.631 kb on - strand, within HMPREF1078_RS04555 at 144.635 kb on - strand, within HMPREF1078_RS04555 at 144.773 kb on - strand, within HMPREF1078_RS04555 at 144.782 kb on - strand, within HMPREF1078_RS04555 at 144.782 kb on - strand, within HMPREF1078_RS04555 at 144.787 kb on + strand, within HMPREF1078_RS04555 at 144.788 kb on - strand, within HMPREF1078_RS04555 at 144.792 kb on - strand, within HMPREF1078_RS04555 at 144.796 kb on + strand, within HMPREF1078_RS04555 at 144.797 kb on - strand, within HMPREF1078_RS04555 at 144.848 kb on - strand, within HMPREF1078_RS04555 at 144.859 kb on + strand, within HMPREF1078_RS04555 at 144.860 kb on - strand, within HMPREF1078_RS04555 at 144.860 kb on - strand, within HMPREF1078_RS04555 at 144.953 kb on + strand, within HMPREF1078_RS04555 at 144.954 kb on - strand, within HMPREF1078_RS04555 at 144.957 kb on + strand, within HMPREF1078_RS04555 at 144.957 kb on + strand, within HMPREF1078_RS04555 at 144.957 kb on + strand, within HMPREF1078_RS04555 at 144.958 kb on - strand, within HMPREF1078_RS04555 at 145.094 kb on - strand at 145.094 kb on - strand at 145.097 kb on + strand at 145.098 kb on - strand at 145.098 kb on - strand at 145.098 kb on - strand at 145.098 kb on - strand at 145.102 kb on - strand at 145.163 kb on + strand at 145.180 kb on + strand at 145.186 kb on + strand at 145.187 kb on - strand at 145.308 kb on + strand at 145.331 kb on + strand at 145.331 kb on + strand at 145.332 kb on - strand at 145.332 kb on - strand at 145.332 kb on - strand at 145.351 kb on - strand at 145.351 kb on - strand at 145.358 kb on + strand at 145.374 kb on + strand at 145.384 kb on + strand at 145.396 kb on + strand at 145.396 kb on + strand at 145.396 kb on + strand at 145.397 kb on - strand at 145.424 kb on + strand at 145.461 kb on - strand at 145.466 kb on + strand at 145.466 kb on + strand at 145.481 kb on + strand at 145.501 kb on - strand at 145.514 kb on - strand at 145.521 kb on + strand at 145.537 kb on - strand at 145.539 kb on + strand at 145.603 kb on + strand, within HMPREF1078_RS04560 at 145.603 kb on + strand, within HMPREF1078_RS04560 at 145.714 kb on - strand, within HMPREF1078_RS04560 at 145.727 kb on - strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.749 kb on + strand, within HMPREF1078_RS04560 at 145.750 kb on - strand, within HMPREF1078_RS04560 at 145.750 kb on - strand, within HMPREF1078_RS04560 at 145.947 kb on - strand, within HMPREF1078_RS04560 at 145.947 kb on - strand, within HMPREF1078_RS04560 at 145.986 kb on + strand, within HMPREF1078_RS04560 at 146.013 kb on + strand, within HMPREF1078_RS04560 at 146.099 kb on - strand, within HMPREF1078_RS04560 at 146.159 kb on + strand, within HMPREF1078_RS04560 at 146.160 kb on - strand, within HMPREF1078_RS04560 at 146.210 kb on + strand, within HMPREF1078_RS04560 at 146.211 kb on - strand, within HMPREF1078_RS04560 at 146.211 kb on - strand, within HMPREF1078_RS04560 at 146.211 kb on - strand, within HMPREF1078_RS04560 at 146.304 kb on - strand at 146.333 kb on + strand at 146.333 kb on + strand at 146.334 kb on - strand at 146.334 kb on - strand at 146.431 kb on + strand, within HMPREF1078_RS04565 at 146.432 kb on - strand, within HMPREF1078_RS04565 at 146.433 kb on + strand, within HMPREF1078_RS04565 at 146.433 kb on + strand, within HMPREF1078_RS04565 at 146.433 kb on + strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.438 kb on + strand, within HMPREF1078_RS04565 at 146.439 kb on - strand, within HMPREF1078_RS04565 at 146.509 kb on - strand, within HMPREF1078_RS04565 at 146.548 kb on - strand, within HMPREF1078_RS04565 at 146.584 kb on + strand, within HMPREF1078_RS04565 at 146.619 kb on + strand, within HMPREF1078_RS04565 at 146.674 kb on + strand, within HMPREF1078_RS04565 at 146.674 kb on + strand, within HMPREF1078_RS04565 at 146.675 kb on - strand, within HMPREF1078_RS04565 at 146.726 kb on - strand, within HMPREF1078_RS04565 at 146.730 kb on + strand, within HMPREF1078_RS04565 at 146.730 kb on + strand, within HMPREF1078_RS04565 at 146.731 kb on - strand, within HMPREF1078_RS04565 at 146.871 kb on + strand, within HMPREF1078_RS04565 at 146.871 kb on + strand, within HMPREF1078_RS04565 at 146.892 kb on + strand, within HMPREF1078_RS04565 at 146.892 kb on + strand, within HMPREF1078_RS04565 at 146.893 kb on - strand, within HMPREF1078_RS04565 at 146.902 kb on - strand, within HMPREF1078_RS04565 at 146.902 kb on - strand, within HMPREF1078_RS04565 at 146.903 kb on + strand, within HMPREF1078_RS04565 at 147.033 kb on + strand, within HMPREF1078_RS04565 at 147.034 kb on - strand, within HMPREF1078_RS04565 at 147.054 kb on + strand, within HMPREF1078_RS04565 at 147.054 kb on + strand, within HMPREF1078_RS04565 at 147.054 kb on + strand, within HMPREF1078_RS04565 at 147.055 kb on - strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.118 kb on - strand, within HMPREF1078_RS04565 at 147.118 kb on - strand, within HMPREF1078_RS04565 at 147.119 kb on + strand, within HMPREF1078_RS04565 at 147.120 kb on - strand, within HMPREF1078_RS04565 at 147.120 kb on - strand, within HMPREF1078_RS04565 at 147.120 kb on - strand, within HMPREF1078_RS04565 at 147.145 kb on + strand, within HMPREF1078_RS04565 at 147.146 kb on - strand, within HMPREF1078_RS04565 at 147.242 kb on + strand at 147.253 kb on - strand at 147.286 kb on + strand at 147.287 kb on - strand at 147.293 kb on + strand at 147.310 kb on - strand at 147.317 kb on + strand at 147.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose 10 mg/mL (C) remove 144,525 - HMPREF1078_RS04555 0.58 -1.4 144,536 - HMPREF1078_RS04555 0.58 -2.6 144,631 - HMPREF1078_RS04555 0.65 -3.1 144,635 - HMPREF1078_RS04555 0.65 -5.5 144,773 - HMPREF1078_RS04555 0.74 -3.4 144,782 - HMPREF1078_RS04555 0.74 -3.0 144,782 - HMPREF1078_RS04555 0.74 -0.9 144,787 + HMPREF1078_RS04555 0.75 -0.3 144,788 - HMPREF1078_RS04555 0.75 -4.0 144,792 - HMPREF1078_RS04555 0.75 -1.1 144,796 + HMPREF1078_RS04555 0.75 -1.6 144,797 - HMPREF1078_RS04555 0.75 -2.5 144,848 - HMPREF1078_RS04555 0.79 -3.5 144,859 + HMPREF1078_RS04555 0.79 -1.0 144,860 - HMPREF1078_RS04555 0.79 -1.9 144,860 - HMPREF1078_RS04555 0.79 -3.7 144,953 + HMPREF1078_RS04555 0.85 +0.1 144,954 - HMPREF1078_RS04555 0.85 -2.8 144,957 + HMPREF1078_RS04555 0.86 -0.7 144,957 + HMPREF1078_RS04555 0.86 -0.7 144,957 + HMPREF1078_RS04555 0.86 -0.1 144,958 - HMPREF1078_RS04555 0.86 -2.6 145,094 - -2.5 145,094 - -5.0 145,097 + -1.5 145,098 - -3.0 145,098 - -4.2 145,098 - -4.0 145,098 - -2.2 145,102 - -2.2 145,163 + -0.3 145,180 + +0.9 145,186 + -1.4 145,187 - +0.2 145,308 + -0.7 145,331 + +0.5 145,331 + +0.8 145,332 - -0.9 145,332 - -1.2 145,332 - -0.8 145,351 - -1.9 145,351 - -1.9 145,358 + +0.1 145,374 + +0.6 145,384 + -0.0 145,396 + -0.2 145,396 + +1.6 145,396 + +0.7 145,397 - -0.9 145,424 + +1.4 145,461 - -0.7 145,466 + -0.6 145,466 + +0.4 145,481 + +0.7 145,501 - -2.7 145,514 - -1.4 145,521 + -2.3 145,537 - -1.1 145,539 + -2.7 145,603 + HMPREF1078_RS04560 0.13 -3.0 145,603 + HMPREF1078_RS04560 0.13 -2.4 145,714 - HMPREF1078_RS04560 0.26 -2.1 145,727 - HMPREF1078_RS04560 0.28 -1.0 145,749 + HMPREF1078_RS04560 0.31 -0.3 145,749 + HMPREF1078_RS04560 0.31 -1.7 145,749 + HMPREF1078_RS04560 0.31 -2.4 145,749 + HMPREF1078_RS04560 0.31 -0.3 145,750 - HMPREF1078_RS04560 0.31 -1.9 145,750 - HMPREF1078_RS04560 0.31 -1.1 145,947 - HMPREF1078_RS04560 0.55 -0.9 145,947 - HMPREF1078_RS04560 0.55 -1.2 145,986 + HMPREF1078_RS04560 0.59 -3.0 146,013 + HMPREF1078_RS04560 0.63 -2.8 146,099 - HMPREF1078_RS04560 0.73 -0.9 146,159 + HMPREF1078_RS04560 0.80 -2.0 146,160 - HMPREF1078_RS04560 0.80 -2.6 146,210 + HMPREF1078_RS04560 0.87 +1.5 146,211 - HMPREF1078_RS04560 0.87 -0.5 146,211 - HMPREF1078_RS04560 0.87 -1.9 146,211 - HMPREF1078_RS04560 0.87 +0.1 146,304 - -0.6 146,333 + -0.2 146,333 + -0.7 146,334 - +1.5 146,334 - -0.5 146,431 + HMPREF1078_RS04565 0.10 -1.1 146,432 - HMPREF1078_RS04565 0.10 -0.7 146,433 + HMPREF1078_RS04565 0.10 -1.0 146,433 + HMPREF1078_RS04565 0.10 -0.8 146,433 + HMPREF1078_RS04565 0.10 -1.9 146,434 - HMPREF1078_RS04565 0.10 -0.4 146,434 - HMPREF1078_RS04565 0.10 +0.7 146,434 - HMPREF1078_RS04565 0.10 -1.4 146,434 - HMPREF1078_RS04565 0.10 -0.2 146,438 + HMPREF1078_RS04565 0.11 -1.0 146,439 - HMPREF1078_RS04565 0.11 +0.0 146,509 - HMPREF1078_RS04565 0.18 -2.7 146,548 - HMPREF1078_RS04565 0.22 -0.7 146,584 + HMPREF1078_RS04565 0.26 -1.7 146,619 + HMPREF1078_RS04565 0.30 +0.7 146,674 + HMPREF1078_RS04565 0.35 -1.1 146,674 + HMPREF1078_RS04565 0.35 -2.6 146,675 - HMPREF1078_RS04565 0.35 -0.4 146,726 - HMPREF1078_RS04565 0.41 -0.6 146,730 + HMPREF1078_RS04565 0.41 +0.7 146,730 + HMPREF1078_RS04565 0.41 -1.4 146,731 - HMPREF1078_RS04565 0.41 -1.5 146,871 + HMPREF1078_RS04565 0.56 -0.2 146,871 + HMPREF1078_RS04565 0.56 -1.6 146,892 + HMPREF1078_RS04565 0.58 -3.1 146,892 + HMPREF1078_RS04565 0.58 +0.9 146,893 - HMPREF1078_RS04565 0.58 +0.7 146,902 - HMPREF1078_RS04565 0.59 -1.3 146,902 - HMPREF1078_RS04565 0.59 +0.5 146,903 + HMPREF1078_RS04565 0.59 -0.1 147,033 + HMPREF1078_RS04565 0.72 -1.3 147,034 - HMPREF1078_RS04565 0.72 -0.1 147,054 + HMPREF1078_RS04565 0.75 -0.9 147,054 + HMPREF1078_RS04565 0.75 -1.1 147,054 + HMPREF1078_RS04565 0.75 -1.1 147,055 - HMPREF1078_RS04565 0.75 -0.4 147,117 + HMPREF1078_RS04565 0.81 -0.3 147,117 + HMPREF1078_RS04565 0.81 -1.9 147,117 + HMPREF1078_RS04565 0.81 -2.6 147,117 + HMPREF1078_RS04565 0.81 -0.2 147,117 + HMPREF1078_RS04565 0.81 -0.9 147,117 + HMPREF1078_RS04565 0.81 +0.8 147,118 - HMPREF1078_RS04565 0.81 -1.3 147,118 - HMPREF1078_RS04565 0.81 -1.4 147,119 + HMPREF1078_RS04565 0.81 -0.3 147,120 - HMPREF1078_RS04565 0.81 -0.8 147,120 - HMPREF1078_RS04565 0.81 -0.8 147,120 - HMPREF1078_RS04565 0.81 +0.8 147,145 + HMPREF1078_RS04565 0.84 +0.3 147,146 - HMPREF1078_RS04565 0.84 +0.2 147,242 + +0.0 147,253 - +0.5 147,286 + +0.9 147,287 - -0.1 147,293 + -0.8 147,310 - -0.2 147,317 + -0.1 147,318 - +0.0
Or see this region's nucleotide sequence