Experiment: D-Raffinose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03055 and HMPREF1078_RS03060 are separated by 8 nucleotides HMPREF1078_RS03060 and HMPREF1078_RS03065 are separated by 135 nucleotides HMPREF1078_RS03065 and HMPREF1078_RS03070 are separated by 8 nucleotides HMPREF1078_RS03070 and HMPREF1078_RS03075 overlap by 4 nucleotides HMPREF1078_RS03075 and HMPREF1078_RS03080 are separated by 58 nucleotides
HMPREF1078_RS03055: HMPREF1078_RS03055 - hypothetical protein, at 730,949 to 732,049
_RS03055
HMPREF1078_RS03060: HMPREF1078_RS03060 - hypothetical protein, at 732,058 to 732,594
_RS03060
HMPREF1078_RS03065: HMPREF1078_RS03065 - hypothetical protein, at 732,730 to 733,029
_RS03065
HMPREF1078_RS03070: HMPREF1078_RS03070 - hypothetical protein, at 733,038 to 733,460
_RS03070
HMPREF1078_RS03075: HMPREF1078_RS03075 - hypothetical protein, at 733,457 to 733,930
_RS03075
HMPREF1078_RS03080: HMPREF1078_RS03080 - hypothetical protein, at 733,989 to 736,562
_RS03080
Position (kb) 732
733
734 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 731.765 kb on + strand, within HMPREF1078_RS03055 at 731.858 kb on + strand, within HMPREF1078_RS03055 at 731.871 kb on - strand, within HMPREF1078_RS03055 at 731.872 kb on + strand, within HMPREF1078_RS03055 at 731.968 kb on + strand at 731.974 kb on + strand at 732.063 kb on + strand at 732.088 kb on + strand at 732.164 kb on + strand, within HMPREF1078_RS03060 at 732.252 kb on + strand, within HMPREF1078_RS03060 at 732.352 kb on + strand, within HMPREF1078_RS03060 at 732.396 kb on + strand, within HMPREF1078_RS03060 at 732.441 kb on + strand, within HMPREF1078_RS03060 at 732.455 kb on + strand, within HMPREF1078_RS03060 at 732.580 kb on + strand at 732.580 kb on + strand at 732.594 kb on + strand at 732.600 kb on + strand at 732.624 kb on + strand at 732.673 kb on + strand at 732.675 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.729 kb on + strand at 732.869 kb on + strand, within HMPREF1078_RS03065 at 732.888 kb on + strand, within HMPREF1078_RS03065 at 732.901 kb on + strand, within HMPREF1078_RS03065 at 732.901 kb on + strand, within HMPREF1078_RS03065 at 732.902 kb on - strand, within HMPREF1078_RS03065 at 732.903 kb on + strand, within HMPREF1078_RS03065 at 732.914 kb on + strand, within HMPREF1078_RS03065 at 732.914 kb on + strand, within HMPREF1078_RS03065 at 732.919 kb on + strand, within HMPREF1078_RS03065 at 732.920 kb on - strand, within HMPREF1078_RS03065 at 732.923 kb on + strand, within HMPREF1078_RS03065 at 732.924 kb on - strand, within HMPREF1078_RS03065 at 732.933 kb on + strand, within HMPREF1078_RS03065 at 732.936 kb on - strand, within HMPREF1078_RS03065 at 732.936 kb on - strand, within HMPREF1078_RS03065 at 733.027 kb on + strand at 733.027 kb on + strand at 733.032 kb on + strand at 733.033 kb on - strand at 733.037 kb on + strand at 733.038 kb on - strand at 733.038 kb on - strand at 733.104 kb on - strand, within HMPREF1078_RS03070 at 733.105 kb on + strand, within HMPREF1078_RS03070 at 733.105 kb on + strand, within HMPREF1078_RS03070 at 733.222 kb on - strand, within HMPREF1078_RS03070 at 733.222 kb on - strand, within HMPREF1078_RS03070 at 733.298 kb on - strand, within HMPREF1078_RS03070 at 733.317 kb on + strand, within HMPREF1078_RS03070 at 733.317 kb on + strand, within HMPREF1078_RS03070 at 733.317 kb on + strand, within HMPREF1078_RS03070 at 733.317 kb on + strand, within HMPREF1078_RS03070 at 733.317 kb on + strand, within HMPREF1078_RS03070 at 733.393 kb on - strand, within HMPREF1078_RS03070 at 733.415 kb on + strand, within HMPREF1078_RS03070 at 733.418 kb on + strand at 733.603 kb on + strand, within HMPREF1078_RS03075 at 733.616 kb on + strand, within HMPREF1078_RS03075 at 733.618 kb on + strand, within HMPREF1078_RS03075 at 733.619 kb on - strand, within HMPREF1078_RS03075 at 733.775 kb on + strand, within HMPREF1078_RS03075 at 733.775 kb on + strand, within HMPREF1078_RS03075 at 733.776 kb on - strand, within HMPREF1078_RS03075 at 733.789 kb on + strand, within HMPREF1078_RS03075 at 733.790 kb on - strand, within HMPREF1078_RS03075 at 733.794 kb on + strand, within HMPREF1078_RS03075 at 733.796 kb on + strand, within HMPREF1078_RS03075 at 733.797 kb on - strand, within HMPREF1078_RS03075 at 733.797 kb on - strand, within HMPREF1078_RS03075 at 733.806 kb on - strand, within HMPREF1078_RS03075 at 733.845 kb on + strand, within HMPREF1078_RS03075 at 733.874 kb on - strand, within HMPREF1078_RS03075 at 733.976 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose 10 mg/mL (C) remove 731,765 + HMPREF1078_RS03055 0.74 -0.2 731,858 + HMPREF1078_RS03055 0.83 -0.3 731,871 - HMPREF1078_RS03055 0.84 +0.1 731,872 + HMPREF1078_RS03055 0.84 -0.5 731,968 + +0.1 731,974 + -1.7 732,063 + -0.4 732,088 + +0.6 732,164 + HMPREF1078_RS03060 0.20 +1.1 732,252 + HMPREF1078_RS03060 0.36 +0.4 732,352 + HMPREF1078_RS03060 0.55 -0.0 732,396 + HMPREF1078_RS03060 0.63 +0.5 732,441 + HMPREF1078_RS03060 0.71 +1.9 732,455 + HMPREF1078_RS03060 0.74 +1.2 732,580 + -2.4 732,580 + -0.7 732,594 + +0.8 732,600 + +0.3 732,624 + +1.3 732,673 + -0.2 732,675 + +0.1 732,729 + -0.4 732,729 + +0.2 732,729 + -0.3 732,729 + +0.2 732,729 + -0.1 732,729 + -0.7 732,729 + -1.1 732,869 + HMPREF1078_RS03065 0.46 +0.1 732,888 + HMPREF1078_RS03065 0.53 -0.7 732,901 + HMPREF1078_RS03065 0.57 -0.2 732,901 + HMPREF1078_RS03065 0.57 +0.1 732,902 - HMPREF1078_RS03065 0.57 +0.5 732,903 + HMPREF1078_RS03065 0.58 -0.7 732,914 + HMPREF1078_RS03065 0.61 -0.1 732,914 + HMPREF1078_RS03065 0.61 -1.1 732,919 + HMPREF1078_RS03065 0.63 -1.5 732,920 - HMPREF1078_RS03065 0.63 -0.7 732,923 + HMPREF1078_RS03065 0.64 +0.6 732,924 - HMPREF1078_RS03065 0.65 -0.7 732,933 + HMPREF1078_RS03065 0.68 -0.8 732,936 - HMPREF1078_RS03065 0.69 -1.9 732,936 - HMPREF1078_RS03065 0.69 -0.1 733,027 + -0.1 733,027 + -0.2 733,032 + -0.9 733,033 - -0.4 733,037 + +0.7 733,038 - -0.9 733,038 - -0.1 733,104 - HMPREF1078_RS03070 0.16 -0.8 733,105 + HMPREF1078_RS03070 0.16 -1.3 733,105 + HMPREF1078_RS03070 0.16 +0.0 733,222 - HMPREF1078_RS03070 0.43 -0.4 733,222 - HMPREF1078_RS03070 0.43 -0.7 733,298 - HMPREF1078_RS03070 0.61 +0.2 733,317 + HMPREF1078_RS03070 0.66 -0.8 733,317 + HMPREF1078_RS03070 0.66 -0.4 733,317 + HMPREF1078_RS03070 0.66 -1.0 733,317 + HMPREF1078_RS03070 0.66 -1.1 733,317 + HMPREF1078_RS03070 0.66 +0.2 733,393 - HMPREF1078_RS03070 0.84 -0.5 733,415 + HMPREF1078_RS03070 0.89 -0.4 733,418 + -2.8 733,603 + HMPREF1078_RS03075 0.31 -0.9 733,616 + HMPREF1078_RS03075 0.34 +0.5 733,618 + HMPREF1078_RS03075 0.34 +0.6 733,619 - HMPREF1078_RS03075 0.34 -1.8 733,775 + HMPREF1078_RS03075 0.67 -1.8 733,775 + HMPREF1078_RS03075 0.67 -0.6 733,776 - HMPREF1078_RS03075 0.67 +0.2 733,789 + HMPREF1078_RS03075 0.70 +1.0 733,790 - HMPREF1078_RS03075 0.70 +0.1 733,794 + HMPREF1078_RS03075 0.71 +0.8 733,796 + HMPREF1078_RS03075 0.72 +1.2 733,797 - HMPREF1078_RS03075 0.72 +1.0 733,797 - HMPREF1078_RS03075 0.72 -0.4 733,806 - HMPREF1078_RS03075 0.74 +0.9 733,845 + HMPREF1078_RS03075 0.82 -1.4 733,874 - HMPREF1078_RS03075 0.88 -1.0 733,976 - +0.7
Or see this region's nucleotide sequence