Experiment: D-Raffinose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00670 and HMPREF1078_RS00675 are separated by 247 nucleotides HMPREF1078_RS00675 and HMPREF1078_RS00680 are separated by 120 nucleotides
HMPREF1078_RS00670: HMPREF1078_RS00670 - MBL fold metallo-hydrolase, at 156,353 to 157,138
_RS00670
HMPREF1078_RS00675: HMPREF1078_RS00675 - SGNH/GDSL hydrolase family protein, at 157,386 to 159,137
_RS00675
HMPREF1078_RS00680: HMPREF1078_RS00680 - glycoside hydrolase family 97 protein, at 159,258 to 161,246
_RS00680
Position (kb) 157
158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 156.402 kb on + strand at 156.403 kb on - strand at 156.425 kb on - strand at 156.425 kb on - strand at 156.457 kb on + strand, within HMPREF1078_RS00670 at 156.458 kb on - strand, within HMPREF1078_RS00670 at 156.458 kb on - strand, within HMPREF1078_RS00670 at 156.466 kb on - strand, within HMPREF1078_RS00670 at 156.545 kb on + strand, within HMPREF1078_RS00670 at 156.546 kb on - strand, within HMPREF1078_RS00670 at 156.546 kb on - strand, within HMPREF1078_RS00670 at 156.582 kb on - strand, within HMPREF1078_RS00670 at 156.609 kb on + strand, within HMPREF1078_RS00670 at 156.642 kb on + strand, within HMPREF1078_RS00670 at 156.642 kb on + strand, within HMPREF1078_RS00670 at 156.642 kb on + strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.643 kb on - strand, within HMPREF1078_RS00670 at 156.682 kb on + strand, within HMPREF1078_RS00670 at 156.689 kb on + strand, within HMPREF1078_RS00670 at 156.689 kb on + strand, within HMPREF1078_RS00670 at 156.690 kb on - strand, within HMPREF1078_RS00670 at 156.707 kb on - strand, within HMPREF1078_RS00670 at 156.710 kb on + strand, within HMPREF1078_RS00670 at 156.838 kb on + strand, within HMPREF1078_RS00670 at 156.845 kb on + strand, within HMPREF1078_RS00670 at 156.858 kb on + strand, within HMPREF1078_RS00670 at 156.863 kb on + strand, within HMPREF1078_RS00670 at 156.881 kb on + strand, within HMPREF1078_RS00670 at 156.881 kb on + strand, within HMPREF1078_RS00670 at 156.882 kb on - strand, within HMPREF1078_RS00670 at 157.004 kb on + strand, within HMPREF1078_RS00670 at 157.125 kb on + strand at 157.132 kb on + strand at 157.133 kb on - strand at 157.133 kb on - strand at 157.139 kb on + strand at 157.283 kb on + strand at 157.348 kb on + strand at 157.358 kb on + strand at 157.391 kb on - strand at 157.433 kb on - strand at 157.749 kb on - strand, within HMPREF1078_RS00675 at 157.749 kb on - strand, within HMPREF1078_RS00675 at 157.751 kb on - strand, within HMPREF1078_RS00675 at 157.771 kb on + strand, within HMPREF1078_RS00675 at 157.771 kb on + strand, within HMPREF1078_RS00675 at 157.771 kb on + strand, within HMPREF1078_RS00675 at 157.771 kb on + strand, within HMPREF1078_RS00675 at 157.772 kb on - strand, within HMPREF1078_RS00675 at 157.772 kb on - strand, within HMPREF1078_RS00675 at 157.772 kb on - strand, within HMPREF1078_RS00675 at 157.772 kb on - strand, within HMPREF1078_RS00675 at 157.773 kb on + strand, within HMPREF1078_RS00675 at 157.774 kb on - strand, within HMPREF1078_RS00675 at 157.774 kb on - strand, within HMPREF1078_RS00675 at 157.950 kb on + strand, within HMPREF1078_RS00675 at 157.990 kb on + strand, within HMPREF1078_RS00675 at 157.991 kb on - strand, within HMPREF1078_RS00675 at 157.994 kb on + strand, within HMPREF1078_RS00675 at 157.995 kb on - strand, within HMPREF1078_RS00675 at 157.995 kb on - strand, within HMPREF1078_RS00675 at 158.051 kb on + strand, within HMPREF1078_RS00675 at 158.052 kb on - strand, within HMPREF1078_RS00675 at 158.126 kb on - strand, within HMPREF1078_RS00675 at 158.149 kb on - strand, within HMPREF1078_RS00675 at 158.149 kb on - strand, within HMPREF1078_RS00675 at 158.174 kb on - strand, within HMPREF1078_RS00675 at 158.277 kb on - strand, within HMPREF1078_RS00675 at 158.277 kb on - strand, within HMPREF1078_RS00675 at 158.277 kb on - strand, within HMPREF1078_RS00675 at 158.282 kb on + strand, within HMPREF1078_RS00675 at 158.409 kb on + strand, within HMPREF1078_RS00675 at 158.409 kb on + strand, within HMPREF1078_RS00675 at 158.413 kb on + strand, within HMPREF1078_RS00675 at 158.413 kb on + strand, within HMPREF1078_RS00675 at 158.672 kb on - strand, within HMPREF1078_RS00675 at 158.674 kb on - strand, within HMPREF1078_RS00675 at 158.733 kb on - strand, within HMPREF1078_RS00675 at 158.733 kb on - strand, within HMPREF1078_RS00675 at 158.736 kb on - strand, within HMPREF1078_RS00675 at 158.737 kb on + strand, within HMPREF1078_RS00675 at 158.737 kb on + strand, within HMPREF1078_RS00675 at 158.737 kb on + strand, within HMPREF1078_RS00675 at 158.737 kb on + strand, within HMPREF1078_RS00675 at 158.738 kb on - strand, within HMPREF1078_RS00675 at 158.738 kb on - strand, within HMPREF1078_RS00675 at 158.741 kb on + strand, within HMPREF1078_RS00675 at 158.741 kb on + strand, within HMPREF1078_RS00675 at 158.741 kb on + strand, within HMPREF1078_RS00675 at 158.741 kb on + strand, within HMPREF1078_RS00675 at 158.742 kb on - strand, within HMPREF1078_RS00675 at 158.744 kb on - strand, within HMPREF1078_RS00675 at 158.804 kb on + strand, within HMPREF1078_RS00675 at 158.805 kb on - strand, within HMPREF1078_RS00675 at 158.846 kb on + strand, within HMPREF1078_RS00675 at 158.846 kb on + strand, within HMPREF1078_RS00675 at 158.846 kb on + strand, within HMPREF1078_RS00675 at 158.847 kb on - strand, within HMPREF1078_RS00675 at 158.847 kb on - strand, within HMPREF1078_RS00675 at 158.847 kb on - strand, within HMPREF1078_RS00675 at 158.859 kb on - strand, within HMPREF1078_RS00675 at 158.903 kb on + strand, within HMPREF1078_RS00675 at 158.999 kb on - strand at 159.118 kb on - strand at 159.142 kb on - strand at 159.142 kb on - strand at 159.144 kb on + strand at 159.144 kb on + strand at 159.144 kb on + strand at 159.153 kb on - strand at 159.161 kb on + strand at 159.162 kb on - strand at 159.164 kb on + strand at 159.170 kb on - strand at 159.174 kb on + strand at 159.175 kb on - strand at 159.186 kb on + strand at 159.187 kb on - strand at 159.217 kb on - strand at 159.226 kb on + strand at 159.276 kb on - strand at 159.276 kb on - strand at 159.395 kb on + strand at 159.463 kb on + strand, within HMPREF1078_RS00680 at 159.531 kb on + strand, within HMPREF1078_RS00680 at 159.554 kb on + strand, within HMPREF1078_RS00680 at 159.554 kb on + strand, within HMPREF1078_RS00680 at 159.554 kb on + strand, within HMPREF1078_RS00680 at 159.555 kb on - strand, within HMPREF1078_RS00680 at 159.558 kb on + strand, within HMPREF1078_RS00680 at 159.558 kb on + strand, within HMPREF1078_RS00680 at 159.558 kb on + strand, within HMPREF1078_RS00680 at 159.559 kb on - strand, within HMPREF1078_RS00680 at 159.592 kb on - strand, within HMPREF1078_RS00680 at 159.608 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.613 kb on - strand, within HMPREF1078_RS00680 at 159.613 kb on - strand, within HMPREF1078_RS00680 at 159.613 kb on - strand, within HMPREF1078_RS00680 at 159.613 kb on - strand, within HMPREF1078_RS00680 at 159.660 kb on - strand, within HMPREF1078_RS00680 at 159.723 kb on + strand, within HMPREF1078_RS00680 at 159.743 kb on + strand, within HMPREF1078_RS00680 at 159.783 kb on + strand, within HMPREF1078_RS00680 at 159.784 kb on - strand, within HMPREF1078_RS00680 at 159.784 kb on - strand, within HMPREF1078_RS00680 at 159.784 kb on - strand, within HMPREF1078_RS00680 at 159.787 kb on + strand, within HMPREF1078_RS00680 at 159.787 kb on + strand, within HMPREF1078_RS00680 at 159.787 kb on + strand, within HMPREF1078_RS00680 at 159.788 kb on - strand, within HMPREF1078_RS00680 at 159.788 kb on - strand, within HMPREF1078_RS00680 at 159.788 kb on - strand, within HMPREF1078_RS00680 at 159.872 kb on + strand, within HMPREF1078_RS00680 at 159.917 kb on + strand, within HMPREF1078_RS00680 at 159.917 kb on + strand, within HMPREF1078_RS00680 at 159.961 kb on - strand, within HMPREF1078_RS00680 at 159.992 kb on + strand, within HMPREF1078_RS00680 at 160.006 kb on + strand, within HMPREF1078_RS00680 at 160.030 kb on + strand, within HMPREF1078_RS00680 at 160.030 kb on + strand, within HMPREF1078_RS00680 at 160.030 kb on + strand, within HMPREF1078_RS00680 at 160.119 kb on + strand, within HMPREF1078_RS00680 at 160.120 kb on - strand, within HMPREF1078_RS00680 at 160.120 kb on - strand, within HMPREF1078_RS00680
Per-strain Table
Position Strand Gene LocusTag Fraction D-Raffinose 10 mg/mL (C) remove 156,402 + -1.1 156,403 - -0.4 156,425 - -0.9 156,425 - -0.8 156,457 + HMPREF1078_RS00670 0.13 -1.6 156,458 - HMPREF1078_RS00670 0.13 -0.7 156,458 - HMPREF1078_RS00670 0.13 +0.9 156,466 - HMPREF1078_RS00670 0.14 -1.1 156,545 + HMPREF1078_RS00670 0.24 -1.6 156,546 - HMPREF1078_RS00670 0.25 -1.3 156,546 - HMPREF1078_RS00670 0.25 -1.4 156,582 - HMPREF1078_RS00670 0.29 -0.8 156,609 + HMPREF1078_RS00670 0.33 +1.0 156,642 + HMPREF1078_RS00670 0.37 +0.6 156,642 + HMPREF1078_RS00670 0.37 +0.8 156,642 + HMPREF1078_RS00670 0.37 -0.5 156,643 - HMPREF1078_RS00670 0.37 -1.8 156,643 - HMPREF1078_RS00670 0.37 -0.6 156,643 - HMPREF1078_RS00670 0.37 -1.9 156,643 - HMPREF1078_RS00670 0.37 -0.6 156,643 - HMPREF1078_RS00670 0.37 +0.7 156,682 + HMPREF1078_RS00670 0.42 +0.4 156,689 + HMPREF1078_RS00670 0.43 +1.4 156,689 + HMPREF1078_RS00670 0.43 -0.1 156,690 - HMPREF1078_RS00670 0.43 -0.2 156,707 - HMPREF1078_RS00670 0.45 +1.0 156,710 + HMPREF1078_RS00670 0.45 -0.4 156,838 + HMPREF1078_RS00670 0.62 +0.3 156,845 + HMPREF1078_RS00670 0.63 -0.3 156,858 + HMPREF1078_RS00670 0.64 -1.3 156,863 + HMPREF1078_RS00670 0.65 -0.6 156,881 + HMPREF1078_RS00670 0.67 +0.3 156,881 + HMPREF1078_RS00670 0.67 -0.7 156,882 - HMPREF1078_RS00670 0.67 +1.5 157,004 + HMPREF1078_RS00670 0.83 -0.5 157,125 + +0.4 157,132 + +0.5 157,133 - -0.3 157,133 - -0.1 157,139 + -1.2 157,283 + +0.2 157,348 + -1.9 157,358 + +1.5 157,391 - -1.5 157,433 - -0.5 157,749 - HMPREF1078_RS00675 0.21 -0.4 157,749 - HMPREF1078_RS00675 0.21 +0.7 157,751 - HMPREF1078_RS00675 0.21 +0.3 157,771 + HMPREF1078_RS00675 0.22 -0.2 157,771 + HMPREF1078_RS00675 0.22 -0.6 157,771 + HMPREF1078_RS00675 0.22 -1.6 157,771 + HMPREF1078_RS00675 0.22 -1.0 157,772 - HMPREF1078_RS00675 0.22 +0.4 157,772 - HMPREF1078_RS00675 0.22 -0.6 157,772 - HMPREF1078_RS00675 0.22 -0.2 157,772 - HMPREF1078_RS00675 0.22 +0.1 157,773 + HMPREF1078_RS00675 0.22 +0.6 157,774 - HMPREF1078_RS00675 0.22 -0.9 157,774 - HMPREF1078_RS00675 0.22 +1.3 157,950 + HMPREF1078_RS00675 0.32 +0.4 157,990 + HMPREF1078_RS00675 0.34 -0.2 157,991 - HMPREF1078_RS00675 0.35 -0.5 157,994 + HMPREF1078_RS00675 0.35 +0.5 157,995 - HMPREF1078_RS00675 0.35 +0.6 157,995 - HMPREF1078_RS00675 0.35 -0.5 158,051 + HMPREF1078_RS00675 0.38 -0.2 158,052 - HMPREF1078_RS00675 0.38 +0.0 158,126 - HMPREF1078_RS00675 0.42 +0.7 158,149 - HMPREF1078_RS00675 0.44 +0.3 158,149 - HMPREF1078_RS00675 0.44 +2.0 158,174 - HMPREF1078_RS00675 0.45 -0.6 158,277 - HMPREF1078_RS00675 0.51 +0.6 158,277 - HMPREF1078_RS00675 0.51 +0.8 158,277 - HMPREF1078_RS00675 0.51 +0.1 158,282 + HMPREF1078_RS00675 0.51 -0.9 158,409 + HMPREF1078_RS00675 0.58 -1.1 158,409 + HMPREF1078_RS00675 0.58 +0.6 158,413 + HMPREF1078_RS00675 0.59 -2.0 158,413 + HMPREF1078_RS00675 0.59 -0.3 158,672 - HMPREF1078_RS00675 0.73 +0.0 158,674 - HMPREF1078_RS00675 0.74 +0.2 158,733 - HMPREF1078_RS00675 0.77 +1.4 158,733 - HMPREF1078_RS00675 0.77 -1.3 158,736 - HMPREF1078_RS00675 0.77 +0.3 158,737 + HMPREF1078_RS00675 0.77 +0.0 158,737 + HMPREF1078_RS00675 0.77 -0.3 158,737 + HMPREF1078_RS00675 0.77 -0.2 158,737 + HMPREF1078_RS00675 0.77 -1.8 158,738 - HMPREF1078_RS00675 0.77 -2.2 158,738 - HMPREF1078_RS00675 0.77 +0.4 158,741 + HMPREF1078_RS00675 0.77 -0.8 158,741 + HMPREF1078_RS00675 0.77 -0.3 158,741 + HMPREF1078_RS00675 0.77 -0.5 158,741 + HMPREF1078_RS00675 0.77 -1.3 158,742 - HMPREF1078_RS00675 0.77 +0.3 158,744 - HMPREF1078_RS00675 0.78 -0.5 158,804 + HMPREF1078_RS00675 0.81 +1.3 158,805 - HMPREF1078_RS00675 0.81 -0.3 158,846 + HMPREF1078_RS00675 0.83 -1.6 158,846 + HMPREF1078_RS00675 0.83 -1.0 158,846 + HMPREF1078_RS00675 0.83 -0.8 158,847 - HMPREF1078_RS00675 0.83 -1.3 158,847 - HMPREF1078_RS00675 0.83 -1.3 158,847 - HMPREF1078_RS00675 0.83 +0.8 158,859 - HMPREF1078_RS00675 0.84 -0.5 158,903 + HMPREF1078_RS00675 0.87 -0.8 158,999 - +0.1 159,118 - -0.1 159,142 - -0.5 159,142 - -0.0 159,144 + -1.0 159,144 + +1.1 159,144 + +0.6 159,153 - +0.0 159,161 + -0.0 159,162 - +0.1 159,164 + -1.1 159,170 - -0.4 159,174 + +1.4 159,175 - +0.3 159,186 + +0.5 159,187 - -0.3 159,217 - -2.4 159,226 + -0.7 159,276 - -0.5 159,276 - +0.1 159,395 + -1.9 159,463 + HMPREF1078_RS00680 0.10 +0.4 159,531 + HMPREF1078_RS00680 0.14 -0.4 159,554 + HMPREF1078_RS00680 0.15 -0.5 159,554 + HMPREF1078_RS00680 0.15 +0.3 159,554 + HMPREF1078_RS00680 0.15 +1.8 159,555 - HMPREF1078_RS00680 0.15 -2.3 159,558 + HMPREF1078_RS00680 0.15 +0.5 159,558 + HMPREF1078_RS00680 0.15 -0.2 159,558 + HMPREF1078_RS00680 0.15 +0.3 159,559 - HMPREF1078_RS00680 0.15 -0.5 159,592 - HMPREF1078_RS00680 0.17 -0.4 159,608 + HMPREF1078_RS00680 0.18 -0.8 159,612 + HMPREF1078_RS00680 0.18 +0.9 159,612 + HMPREF1078_RS00680 0.18 +1.1 159,612 + HMPREF1078_RS00680 0.18 -1.3 159,612 + HMPREF1078_RS00680 0.18 -1.5 159,612 + HMPREF1078_RS00680 0.18 -0.4 159,613 - HMPREF1078_RS00680 0.18 +0.8 159,613 - HMPREF1078_RS00680 0.18 -0.1 159,613 - HMPREF1078_RS00680 0.18 +0.8 159,613 - HMPREF1078_RS00680 0.18 +0.2 159,660 - HMPREF1078_RS00680 0.20 -0.1 159,723 + HMPREF1078_RS00680 0.23 +2.0 159,743 + HMPREF1078_RS00680 0.24 +0.1 159,783 + HMPREF1078_RS00680 0.26 +0.3 159,784 - HMPREF1078_RS00680 0.26 -1.0 159,784 - HMPREF1078_RS00680 0.26 -0.3 159,784 - HMPREF1078_RS00680 0.26 +0.0 159,787 + HMPREF1078_RS00680 0.27 -3.4 159,787 + HMPREF1078_RS00680 0.27 +0.1 159,787 + HMPREF1078_RS00680 0.27 -0.2 159,788 - HMPREF1078_RS00680 0.27 -3.4 159,788 - HMPREF1078_RS00680 0.27 -0.9 159,788 - HMPREF1078_RS00680 0.27 +0.6 159,872 + HMPREF1078_RS00680 0.31 -1.2 159,917 + HMPREF1078_RS00680 0.33 -0.8 159,917 + HMPREF1078_RS00680 0.33 -1.2 159,961 - HMPREF1078_RS00680 0.35 -1.2 159,992 + HMPREF1078_RS00680 0.37 +2.0 160,006 + HMPREF1078_RS00680 0.38 -0.3 160,030 + HMPREF1078_RS00680 0.39 -0.5 160,030 + HMPREF1078_RS00680 0.39 -0.9 160,030 + HMPREF1078_RS00680 0.39 -0.3 160,119 + HMPREF1078_RS00680 0.43 +1.4 160,120 - HMPREF1078_RS00680 0.43 +0.7 160,120 - HMPREF1078_RS00680 0.43 +1.2
Or see this region's nucleotide sequence