Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16680 and HMPREF1078_RS16685 are separated by 40 nucleotides HMPREF1078_RS16685 and HMPREF1078_RS16690 are separated by 12 nucleotides HMPREF1078_RS16690 and HMPREF1078_RS16695 are separated by 23 nucleotides
HMPREF1078_RS16680: HMPREF1078_RS16680 - thioesterase, at 49,067 to 49,804
_RS16680
HMPREF1078_RS16685: HMPREF1078_RS16685 - acetolactate synthase small subunit, at 49,845 to 50,396
_RS16685
HMPREF1078_RS16690: HMPREF1078_RS16690 - biosynthetic-type acetolactate synthase large subunit, at 50,409 to 52,109
_RS16690
HMPREF1078_RS16695: HMPREF1078_RS16695 - dihydroxy-acid dehydratase, at 52,133 to 53,968
_RS16695
Position (kb) 50
51
52
53 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 49.468 kb on + strand, within HMPREF1078_RS16680 at 49.468 kb on + strand, within HMPREF1078_RS16680 at 49.492 kb on + strand, within HMPREF1078_RS16680 at 49.561 kb on - strand, within HMPREF1078_RS16680 at 49.570 kb on + strand, within HMPREF1078_RS16680 at 49.571 kb on + strand, within HMPREF1078_RS16680 at 49.571 kb on - strand, within HMPREF1078_RS16680 at 49.571 kb on - strand, within HMPREF1078_RS16680 at 49.571 kb on - strand, within HMPREF1078_RS16680 at 49.634 kb on - strand, within HMPREF1078_RS16680 at 49.648 kb on + strand, within HMPREF1078_RS16680 at 49.649 kb on - strand, within HMPREF1078_RS16680 at 49.651 kb on - strand, within HMPREF1078_RS16680 at 49.697 kb on + strand, within HMPREF1078_RS16680 at 49.697 kb on + strand, within HMPREF1078_RS16680 at 49.697 kb on + strand, within HMPREF1078_RS16680 at 49.698 kb on - strand, within HMPREF1078_RS16680 at 49.705 kb on - strand, within HMPREF1078_RS16680 at 49.728 kb on - strand, within HMPREF1078_RS16680 at 49.841 kb on + strand at 49.865 kb on + strand at 49.866 kb on - strand at 49.866 kb on - strand at 49.887 kb on - strand at 50.000 kb on - strand, within HMPREF1078_RS16685 at 50.058 kb on - strand, within HMPREF1078_RS16685 at 50.058 kb on - strand, within HMPREF1078_RS16685 at 50.060 kb on - strand, within HMPREF1078_RS16685 at 50.118 kb on - strand, within HMPREF1078_RS16685 at 50.119 kb on + strand, within HMPREF1078_RS16685 at 50.119 kb on + strand, within HMPREF1078_RS16685 at 50.156 kb on + strand, within HMPREF1078_RS16685 at 50.161 kb on + strand, within HMPREF1078_RS16685 at 50.162 kb on - strand, within HMPREF1078_RS16685 at 50.165 kb on - strand, within HMPREF1078_RS16685 at 50.178 kb on - strand, within HMPREF1078_RS16685 at 50.253 kb on - strand, within HMPREF1078_RS16685 at 50.256 kb on + strand, within HMPREF1078_RS16685 at 50.257 kb on - strand, within HMPREF1078_RS16685 at 50.257 kb on - strand, within HMPREF1078_RS16685 at 50.257 kb on - strand, within HMPREF1078_RS16685 at 50.257 kb on - strand, within HMPREF1078_RS16685 at 50.257 kb on - strand, within HMPREF1078_RS16685 at 50.258 kb on + strand, within HMPREF1078_RS16685 at 50.346 kb on + strand at 50.348 kb on - strand at 50.351 kb on + strand at 50.376 kb on - strand at 50.376 kb on - strand at 50.376 kb on - strand at 50.396 kb on + strand at 50.396 kb on + strand at 50.414 kb on + strand at 50.415 kb on - strand at 50.424 kb on + strand at 50.424 kb on + strand at 50.425 kb on - strand at 50.436 kb on + strand at 50.466 kb on + strand at 50.467 kb on - strand at 50.467 kb on - strand at 50.467 kb on - strand at 50.471 kb on + strand at 50.471 kb on + strand at 50.472 kb on - strand at 50.627 kb on + strand, within HMPREF1078_RS16690 at 50.628 kb on - strand, within HMPREF1078_RS16690 at 50.628 kb on - strand, within HMPREF1078_RS16690 at 50.628 kb on - strand, within HMPREF1078_RS16690 at 50.687 kb on + strand, within HMPREF1078_RS16690 at 50.688 kb on - strand, within HMPREF1078_RS16690 at 50.793 kb on - strand, within HMPREF1078_RS16690 at 50.867 kb on + strand, within HMPREF1078_RS16690 at 50.889 kb on - strand, within HMPREF1078_RS16690 at 50.937 kb on - strand, within HMPREF1078_RS16690 at 51.114 kb on + strand, within HMPREF1078_RS16690 at 51.129 kb on - strand, within HMPREF1078_RS16690 at 51.129 kb on - strand, within HMPREF1078_RS16690 at 51.338 kb on + strand, within HMPREF1078_RS16690 at 51.338 kb on + strand, within HMPREF1078_RS16690 at 51.345 kb on - strand, within HMPREF1078_RS16690 at 51.537 kb on - strand, within HMPREF1078_RS16690 at 51.554 kb on - strand, within HMPREF1078_RS16690 at 51.565 kb on + strand, within HMPREF1078_RS16690 at 51.566 kb on - strand, within HMPREF1078_RS16690 at 51.566 kb on - strand, within HMPREF1078_RS16690 at 51.570 kb on + strand, within HMPREF1078_RS16690 at 51.586 kb on + strand, within HMPREF1078_RS16690 at 51.650 kb on + strand, within HMPREF1078_RS16690 at 51.713 kb on - strand, within HMPREF1078_RS16690 at 51.738 kb on - strand, within HMPREF1078_RS16690 at 51.815 kb on + strand, within HMPREF1078_RS16690 at 51.858 kb on - strand, within HMPREF1078_RS16690 at 51.858 kb on - strand, within HMPREF1078_RS16690 at 51.919 kb on + strand, within HMPREF1078_RS16690 at 51.963 kb on + strand at 51.986 kb on - strand at 52.003 kb on + strand at 52.004 kb on - strand at 52.008 kb on - strand at 52.059 kb on + strand at 52.312 kb on + strand at 52.338 kb on - strand, within HMPREF1078_RS16695 at 52.338 kb on - strand, within HMPREF1078_RS16695 at 52.340 kb on - strand, within HMPREF1078_RS16695 at 52.394 kb on - strand, within HMPREF1078_RS16695 at 52.463 kb on + strand, within HMPREF1078_RS16695 at 52.464 kb on - strand, within HMPREF1078_RS16695 at 52.479 kb on - strand, within HMPREF1078_RS16695 at 52.482 kb on + strand, within HMPREF1078_RS16695 at 52.483 kb on - strand, within HMPREF1078_RS16695 at 52.483 kb on - strand, within HMPREF1078_RS16695 at 52.691 kb on - strand, within HMPREF1078_RS16695 at 52.728 kb on + strand, within HMPREF1078_RS16695 at 52.783 kb on + strand, within HMPREF1078_RS16695 at 52.783 kb on + strand, within HMPREF1078_RS16695 at 52.984 kb on + strand, within HMPREF1078_RS16695 at 52.985 kb on - strand, within HMPREF1078_RS16695
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 49,468 + HMPREF1078_RS16680 0.54 +1.3 49,468 + HMPREF1078_RS16680 0.54 +1.1 49,492 + HMPREF1078_RS16680 0.58 -0.3 49,561 - HMPREF1078_RS16680 0.67 -1.7 49,570 + HMPREF1078_RS16680 0.68 +0.4 49,571 + HMPREF1078_RS16680 0.68 -0.7 49,571 - HMPREF1078_RS16680 0.68 +1.6 49,571 - HMPREF1078_RS16680 0.68 -1.5 49,571 - HMPREF1078_RS16680 0.68 -2.0 49,634 - HMPREF1078_RS16680 0.77 -0.4 49,648 + HMPREF1078_RS16680 0.79 +1.2 49,649 - HMPREF1078_RS16680 0.79 +0.8 49,651 - HMPREF1078_RS16680 0.79 +0.8 49,697 + HMPREF1078_RS16680 0.85 -0.4 49,697 + HMPREF1078_RS16680 0.85 +2.2 49,697 + HMPREF1078_RS16680 0.85 +0.9 49,698 - HMPREF1078_RS16680 0.86 +0.1 49,705 - HMPREF1078_RS16680 0.86 -1.5 49,728 - HMPREF1078_RS16680 0.90 -0.9 49,841 + +0.2 49,865 + +1.4 49,866 - -0.2 49,866 - -0.1 49,887 - +1.6 50,000 - HMPREF1078_RS16685 0.28 +0.9 50,058 - HMPREF1078_RS16685 0.39 -0.9 50,058 - HMPREF1078_RS16685 0.39 -0.0 50,060 - HMPREF1078_RS16685 0.39 -1.2 50,118 - HMPREF1078_RS16685 0.49 +0.8 50,119 + HMPREF1078_RS16685 0.50 +0.6 50,119 + HMPREF1078_RS16685 0.50 +2.1 50,156 + HMPREF1078_RS16685 0.56 +1.7 50,161 + HMPREF1078_RS16685 0.57 -0.7 50,162 - HMPREF1078_RS16685 0.57 +1.1 50,165 - HMPREF1078_RS16685 0.58 +2.7 50,178 - HMPREF1078_RS16685 0.60 +2.0 50,253 - HMPREF1078_RS16685 0.74 +2.0 50,256 + HMPREF1078_RS16685 0.74 +2.5 50,257 - HMPREF1078_RS16685 0.75 +0.9 50,257 - HMPREF1078_RS16685 0.75 +1.8 50,257 - HMPREF1078_RS16685 0.75 +3.3 50,257 - HMPREF1078_RS16685 0.75 +2.9 50,257 - HMPREF1078_RS16685 0.75 +1.9 50,258 + HMPREF1078_RS16685 0.75 +3.1 50,346 + +2.4 50,348 - +1.2 50,351 + +2.3 50,376 - +1.9 50,376 - +1.2 50,376 - +1.2 50,396 + +1.6 50,396 + +1.8 50,414 + +1.4 50,415 - -0.8 50,424 + -0.2 50,424 + +1.3 50,425 - +2.0 50,436 + +1.8 50,466 + +1.6 50,467 - -0.5 50,467 - +1.7 50,467 - +1.9 50,471 + +1.6 50,471 + +1.0 50,472 - +2.2 50,627 + HMPREF1078_RS16690 0.13 -0.9 50,628 - HMPREF1078_RS16690 0.13 +1.6 50,628 - HMPREF1078_RS16690 0.13 +0.1 50,628 - HMPREF1078_RS16690 0.13 +1.0 50,687 + HMPREF1078_RS16690 0.16 -0.5 50,688 - HMPREF1078_RS16690 0.16 +2.2 50,793 - HMPREF1078_RS16690 0.23 +1.7 50,867 + HMPREF1078_RS16690 0.27 -1.6 50,889 - HMPREF1078_RS16690 0.28 -0.2 50,937 - HMPREF1078_RS16690 0.31 +2.3 51,114 + HMPREF1078_RS16690 0.41 +0.9 51,129 - HMPREF1078_RS16690 0.42 +1.5 51,129 - HMPREF1078_RS16690 0.42 -0.2 51,338 + HMPREF1078_RS16690 0.55 +2.9 51,338 + HMPREF1078_RS16690 0.55 +0.5 51,345 - HMPREF1078_RS16690 0.55 +3.2 51,537 - HMPREF1078_RS16690 0.66 +0.6 51,554 - HMPREF1078_RS16690 0.67 +2.3 51,565 + HMPREF1078_RS16690 0.68 +1.8 51,566 - HMPREF1078_RS16690 0.68 +2.4 51,566 - HMPREF1078_RS16690 0.68 +1.2 51,570 + HMPREF1078_RS16690 0.68 +1.1 51,586 + HMPREF1078_RS16690 0.69 +1.3 51,650 + HMPREF1078_RS16690 0.73 +2.2 51,713 - HMPREF1078_RS16690 0.77 +0.7 51,738 - HMPREF1078_RS16690 0.78 +1.3 51,815 + HMPREF1078_RS16690 0.83 +1.0 51,858 - HMPREF1078_RS16690 0.85 +1.9 51,858 - HMPREF1078_RS16690 0.85 +0.9 51,919 + HMPREF1078_RS16690 0.89 +0.6 51,963 + +1.3 51,986 - +1.4 52,003 + +1.1 52,004 - +1.6 52,008 - +2.3 52,059 + +1.1 52,312 + +1.6 52,338 - HMPREF1078_RS16695 0.11 +1.3 52,338 - HMPREF1078_RS16695 0.11 +0.0 52,340 - HMPREF1078_RS16695 0.11 +0.5 52,394 - HMPREF1078_RS16695 0.14 +0.9 52,463 + HMPREF1078_RS16695 0.18 +1.2 52,464 - HMPREF1078_RS16695 0.18 +1.4 52,479 - HMPREF1078_RS16695 0.19 +0.8 52,482 + HMPREF1078_RS16695 0.19 +2.0 52,483 - HMPREF1078_RS16695 0.19 -2.4 52,483 - HMPREF1078_RS16695 0.19 +0.5 52,691 - HMPREF1078_RS16695 0.30 +2.1 52,728 + HMPREF1078_RS16695 0.32 +0.1 52,783 + HMPREF1078_RS16695 0.35 +1.3 52,783 + HMPREF1078_RS16695 0.35 +1.4 52,984 + HMPREF1078_RS16695 0.46 +1.4 52,985 - HMPREF1078_RS16695 0.46 +2.1
Or see this region's nucleotide sequence