Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS18790 and HMPREF1078_RS11850 overlap by 63 nucleotides HMPREF1078_RS11850 and HMPREF1078_RS11855 are separated by 157 nucleotides HMPREF1078_RS11855 and HMPREF1078_RS11860 are separated by 328 nucleotides
HMPREF1078_RS18790: HMPREF1078_RS18790 - DUF86 domain-containing protein, at 312,616 to 312,816
_RS18790
HMPREF1078_RS11850: HMPREF1078_RS11850 - glycoside hydrolase family 16 protein, at 312,754 to 313,494
_RS11850
HMPREF1078_RS11855: HMPREF1078_RS11855 - glycoside hydrolase family 2 TIM barrel-domain containing protein, at 313,652 to 316,312
_RS11855
HMPREF1078_RS11860: HMPREF1078_RS11860 - family 20 glycosylhydrolase, at 316,641 to 318,692
_RS11860
Position (kb) 313
314
315
316
317 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 312.674 kb on + strand, within HMPREF1078_RS18790 at 312.675 kb on - strand, within HMPREF1078_RS18790 at 312.677 kb on + strand, within HMPREF1078_RS18790 at 312.678 kb on - strand, within HMPREF1078_RS18790 at 312.678 kb on - strand, within HMPREF1078_RS18790 at 312.681 kb on + strand, within HMPREF1078_RS18790 at 312.682 kb on - strand, within HMPREF1078_RS18790 at 312.732 kb on - strand, within HMPREF1078_RS18790 at 312.923 kb on + strand, within HMPREF1078_RS11850 at 312.930 kb on - strand, within HMPREF1078_RS11850 at 312.979 kb on + strand, within HMPREF1078_RS11850 at 312.987 kb on - strand, within HMPREF1078_RS11850 at 312.994 kb on - strand, within HMPREF1078_RS11850 at 312.994 kb on - strand, within HMPREF1078_RS11850 at 312.994 kb on - strand, within HMPREF1078_RS11850 at 312.994 kb on - strand, within HMPREF1078_RS11850 at 313.059 kb on - strand, within HMPREF1078_RS11850 at 313.059 kb on - strand, within HMPREF1078_RS11850 at 313.059 kb on - strand, within HMPREF1078_RS11850 at 313.063 kb on - strand, within HMPREF1078_RS11850 at 313.063 kb on - strand, within HMPREF1078_RS11850 at 313.063 kb on - strand, within HMPREF1078_RS11850 at 313.063 kb on - strand, within HMPREF1078_RS11850 at 313.065 kb on - strand, within HMPREF1078_RS11850 at 313.065 kb on - strand, within HMPREF1078_RS11850 at 313.095 kb on + strand, within HMPREF1078_RS11850 at 313.096 kb on - strand, within HMPREF1078_RS11850 at 313.101 kb on + strand, within HMPREF1078_RS11850 at 313.197 kb on - strand, within HMPREF1078_RS11850 at 313.252 kb on - strand, within HMPREF1078_RS11850 at 313.253 kb on + strand, within HMPREF1078_RS11850 at 313.306 kb on + strand, within HMPREF1078_RS11850 at 313.339 kb on - strand, within HMPREF1078_RS11850 at 313.341 kb on + strand, within HMPREF1078_RS11850 at 313.341 kb on + strand, within HMPREF1078_RS11850 at 313.342 kb on - strand, within HMPREF1078_RS11850 at 313.344 kb on - strand, within HMPREF1078_RS11850 at 313.344 kb on - strand, within HMPREF1078_RS11850 at 313.365 kb on + strand, within HMPREF1078_RS11850 at 313.365 kb on + strand, within HMPREF1078_RS11850 at 313.366 kb on - strand, within HMPREF1078_RS11850 at 313.366 kb on - strand, within HMPREF1078_RS11850 at 313.371 kb on + strand, within HMPREF1078_RS11850 at 313.401 kb on + strand, within HMPREF1078_RS11850 at 313.519 kb on + strand at 313.519 kb on + strand at 313.520 kb on - strand at 313.543 kb on + strand at 313.618 kb on + strand at 313.634 kb on + strand at 313.654 kb on - strand at 313.697 kb on - strand at 313.871 kb on + strand at 313.917 kb on - strand at 314.006 kb on + strand, within HMPREF1078_RS11855 at 314.007 kb on - strand, within HMPREF1078_RS11855 at 314.044 kb on + strand, within HMPREF1078_RS11855 at 314.044 kb on + strand, within HMPREF1078_RS11855 at 314.045 kb on - strand, within HMPREF1078_RS11855 at 314.050 kb on + strand, within HMPREF1078_RS11855 at 314.051 kb on - strand, within HMPREF1078_RS11855 at 314.051 kb on - strand, within HMPREF1078_RS11855 at 314.078 kb on - strand, within HMPREF1078_RS11855 at 314.096 kb on + strand, within HMPREF1078_RS11855 at 314.192 kb on - strand, within HMPREF1078_RS11855 at 314.197 kb on + strand, within HMPREF1078_RS11855 at 314.198 kb on - strand, within HMPREF1078_RS11855 at 314.198 kb on - strand, within HMPREF1078_RS11855 at 314.238 kb on + strand, within HMPREF1078_RS11855 at 314.239 kb on - strand, within HMPREF1078_RS11855 at 314.350 kb on + strand, within HMPREF1078_RS11855 at 314.353 kb on - strand, within HMPREF1078_RS11855 at 314.359 kb on - strand, within HMPREF1078_RS11855 at 314.417 kb on + strand, within HMPREF1078_RS11855 at 314.456 kb on - strand, within HMPREF1078_RS11855 at 314.457 kb on + strand, within HMPREF1078_RS11855 at 314.457 kb on + strand, within HMPREF1078_RS11855 at 314.457 kb on + strand, within HMPREF1078_RS11855 at 314.458 kb on - strand, within HMPREF1078_RS11855 at 314.458 kb on - strand, within HMPREF1078_RS11855 at 314.521 kb on + strand, within HMPREF1078_RS11855 at 314.523 kb on + strand, within HMPREF1078_RS11855 at 314.524 kb on - strand, within HMPREF1078_RS11855 at 314.527 kb on - strand, within HMPREF1078_RS11855 at 314.568 kb on + strand, within HMPREF1078_RS11855 at 314.568 kb on + strand, within HMPREF1078_RS11855 at 314.569 kb on - strand, within HMPREF1078_RS11855 at 314.649 kb on + strand, within HMPREF1078_RS11855 at 314.802 kb on + strand, within HMPREF1078_RS11855 at 314.842 kb on + strand, within HMPREF1078_RS11855 at 314.863 kb on - strand, within HMPREF1078_RS11855 at 314.863 kb on - strand, within HMPREF1078_RS11855 at 315.060 kb on + strand, within HMPREF1078_RS11855 at 315.061 kb on - strand, within HMPREF1078_RS11855 at 315.061 kb on - strand, within HMPREF1078_RS11855 at 315.310 kb on - strand, within HMPREF1078_RS11855 at 315.328 kb on - strand, within HMPREF1078_RS11855 at 315.347 kb on - strand, within HMPREF1078_RS11855 at 315.432 kb on + strand, within HMPREF1078_RS11855 at 315.432 kb on + strand, within HMPREF1078_RS11855 at 315.433 kb on - strand, within HMPREF1078_RS11855 at 315.497 kb on - strand, within HMPREF1078_RS11855 at 315.521 kb on + strand, within HMPREF1078_RS11855 at 315.522 kb on - strand, within HMPREF1078_RS11855 at 315.522 kb on - strand, within HMPREF1078_RS11855 at 315.545 kb on + strand, within HMPREF1078_RS11855 at 315.571 kb on + strand, within HMPREF1078_RS11855 at 315.571 kb on + strand, within HMPREF1078_RS11855 at 315.620 kb on + strand, within HMPREF1078_RS11855 at 315.620 kb on + strand, within HMPREF1078_RS11855 at 315.620 kb on + strand, within HMPREF1078_RS11855 at 315.621 kb on - strand, within HMPREF1078_RS11855 at 315.626 kb on + strand, within HMPREF1078_RS11855 at 315.731 kb on - strand, within HMPREF1078_RS11855 at 315.772 kb on - strand, within HMPREF1078_RS11855 at 315.775 kb on + strand, within HMPREF1078_RS11855 at 315.775 kb on + strand, within HMPREF1078_RS11855 at 315.775 kb on + strand, within HMPREF1078_RS11855 at 315.776 kb on - strand, within HMPREF1078_RS11855 at 315.776 kb on - strand, within HMPREF1078_RS11855 at 315.777 kb on + strand, within HMPREF1078_RS11855 at 315.961 kb on + strand, within HMPREF1078_RS11855 at 315.961 kb on + strand, within HMPREF1078_RS11855 at 316.015 kb on + strand, within HMPREF1078_RS11855 at 316.015 kb on + strand, within HMPREF1078_RS11855 at 316.054 kb on + strand at 316.080 kb on + strand at 316.162 kb on + strand at 316.300 kb on + strand at 316.315 kb on + strand at 316.321 kb on + strand at 316.321 kb on + strand at 316.326 kb on - strand at 316.339 kb on - strand at 316.345 kb on + strand at 316.347 kb on + strand at 316.347 kb on + strand at 316.347 kb on + strand at 316.347 kb on + strand at 316.348 kb on - strand at 316.348 kb on - strand at 316.348 kb on - strand at 316.381 kb on + strand at 316.408 kb on - strand at 316.427 kb on + strand at 316.428 kb on - strand at 316.476 kb on - strand at 316.601 kb on + strand at 316.602 kb on - strand at 316.642 kb on + strand at 316.687 kb on + strand at 316.691 kb on - strand at 316.940 kb on - strand, within HMPREF1078_RS11860 at 316.964 kb on + strand, within HMPREF1078_RS11860 at 316.965 kb on - strand, within HMPREF1078_RS11860 at 316.977 kb on + strand, within HMPREF1078_RS11860 at 317.063 kb on + strand, within HMPREF1078_RS11860 at 317.112 kb on - strand, within HMPREF1078_RS11860 at 317.242 kb on + strand, within HMPREF1078_RS11860
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 312,674 + HMPREF1078_RS18790 0.29 -0.2 312,675 - HMPREF1078_RS18790 0.29 -2.1 312,677 + HMPREF1078_RS18790 0.30 +0.3 312,678 - HMPREF1078_RS18790 0.31 +1.4 312,678 - HMPREF1078_RS18790 0.31 -0.3 312,681 + HMPREF1078_RS18790 0.32 -0.0 312,682 - HMPREF1078_RS18790 0.33 +0.5 312,732 - HMPREF1078_RS18790 0.58 -0.3 312,923 + HMPREF1078_RS11850 0.23 +1.3 312,930 - HMPREF1078_RS11850 0.24 +0.5 312,979 + HMPREF1078_RS11850 0.30 +0.5 312,987 - HMPREF1078_RS11850 0.31 +0.8 312,994 - HMPREF1078_RS11850 0.32 -2.2 312,994 - HMPREF1078_RS11850 0.32 -2.3 312,994 - HMPREF1078_RS11850 0.32 -1.9 312,994 - HMPREF1078_RS11850 0.32 -3.4 313,059 - HMPREF1078_RS11850 0.41 +0.6 313,059 - HMPREF1078_RS11850 0.41 +0.8 313,059 - HMPREF1078_RS11850 0.41 +0.1 313,063 - HMPREF1078_RS11850 0.42 -1.1 313,063 - HMPREF1078_RS11850 0.42 +1.1 313,063 - HMPREF1078_RS11850 0.42 -0.3 313,063 - HMPREF1078_RS11850 0.42 +1.4 313,065 - HMPREF1078_RS11850 0.42 -0.5 313,065 - HMPREF1078_RS11850 0.42 -1.3 313,095 + HMPREF1078_RS11850 0.46 -0.7 313,096 - HMPREF1078_RS11850 0.46 -0.5 313,101 + HMPREF1078_RS11850 0.47 +0.0 313,197 - HMPREF1078_RS11850 0.60 -1.1 313,252 - HMPREF1078_RS11850 0.67 -0.8 313,253 + HMPREF1078_RS11850 0.67 -0.0 313,306 + HMPREF1078_RS11850 0.74 -2.0 313,339 - HMPREF1078_RS11850 0.79 +0.9 313,341 + HMPREF1078_RS11850 0.79 +2.7 313,341 + HMPREF1078_RS11850 0.79 +0.7 313,342 - HMPREF1078_RS11850 0.79 +0.2 313,344 - HMPREF1078_RS11850 0.80 -0.2 313,344 - HMPREF1078_RS11850 0.80 +0.2 313,365 + HMPREF1078_RS11850 0.82 +1.0 313,365 + HMPREF1078_RS11850 0.82 +0.1 313,366 - HMPREF1078_RS11850 0.83 -1.3 313,366 - HMPREF1078_RS11850 0.83 -0.3 313,371 + HMPREF1078_RS11850 0.83 -2.4 313,401 + HMPREF1078_RS11850 0.87 +1.1 313,519 + +1.5 313,519 + +0.0 313,520 - +0.1 313,543 + -1.6 313,618 + -0.7 313,634 + -0.7 313,654 - -1.7 313,697 - +0.1 313,871 + -1.2 313,917 - -1.5 314,006 + HMPREF1078_RS11855 0.13 -2.5 314,007 - HMPREF1078_RS11855 0.13 -0.2 314,044 + HMPREF1078_RS11855 0.15 -1.3 314,044 + HMPREF1078_RS11855 0.15 -1.9 314,045 - HMPREF1078_RS11855 0.15 +1.5 314,050 + HMPREF1078_RS11855 0.15 -1.0 314,051 - HMPREF1078_RS11855 0.15 +0.8 314,051 - HMPREF1078_RS11855 0.15 -1.3 314,078 - HMPREF1078_RS11855 0.16 -2.3 314,096 + HMPREF1078_RS11855 0.17 +2.1 314,192 - HMPREF1078_RS11855 0.20 -1.5 314,197 + HMPREF1078_RS11855 0.20 +0.3 314,198 - HMPREF1078_RS11855 0.21 -1.3 314,198 - HMPREF1078_RS11855 0.21 +3.8 314,238 + HMPREF1078_RS11855 0.22 +0.3 314,239 - HMPREF1078_RS11855 0.22 -0.6 314,350 + HMPREF1078_RS11855 0.26 +0.4 314,353 - HMPREF1078_RS11855 0.26 +2.0 314,359 - HMPREF1078_RS11855 0.27 -1.4 314,417 + HMPREF1078_RS11855 0.29 +1.6 314,456 - HMPREF1078_RS11855 0.30 +1.0 314,457 + HMPREF1078_RS11855 0.30 +1.5 314,457 + HMPREF1078_RS11855 0.30 +1.5 314,457 + HMPREF1078_RS11855 0.30 +0.5 314,458 - HMPREF1078_RS11855 0.30 +0.1 314,458 - HMPREF1078_RS11855 0.30 -0.3 314,521 + HMPREF1078_RS11855 0.33 +0.9 314,523 + HMPREF1078_RS11855 0.33 -1.0 314,524 - HMPREF1078_RS11855 0.33 +2.2 314,527 - HMPREF1078_RS11855 0.33 +0.0 314,568 + HMPREF1078_RS11855 0.34 -3.0 314,568 + HMPREF1078_RS11855 0.34 +0.2 314,569 - HMPREF1078_RS11855 0.34 -0.7 314,649 + HMPREF1078_RS11855 0.37 -1.7 314,802 + HMPREF1078_RS11855 0.43 -0.7 314,842 + HMPREF1078_RS11855 0.45 +0.7 314,863 - HMPREF1078_RS11855 0.46 -0.1 314,863 - HMPREF1078_RS11855 0.46 +1.6 315,060 + HMPREF1078_RS11855 0.53 +1.3 315,061 - HMPREF1078_RS11855 0.53 +0.3 315,061 - HMPREF1078_RS11855 0.53 -2.2 315,310 - HMPREF1078_RS11855 0.62 -1.4 315,328 - HMPREF1078_RS11855 0.63 -0.8 315,347 - HMPREF1078_RS11855 0.64 +0.0 315,432 + HMPREF1078_RS11855 0.67 -1.0 315,432 + HMPREF1078_RS11855 0.67 -0.3 315,433 - HMPREF1078_RS11855 0.67 +0.7 315,497 - HMPREF1078_RS11855 0.69 +0.0 315,521 + HMPREF1078_RS11855 0.70 +0.2 315,522 - HMPREF1078_RS11855 0.70 -1.1 315,522 - HMPREF1078_RS11855 0.70 +0.2 315,545 + HMPREF1078_RS11855 0.71 +0.0 315,571 + HMPREF1078_RS11855 0.72 +2.3 315,571 + HMPREF1078_RS11855 0.72 -0.5 315,620 + HMPREF1078_RS11855 0.74 -0.1 315,620 + HMPREF1078_RS11855 0.74 +1.8 315,620 + HMPREF1078_RS11855 0.74 -1.1 315,621 - HMPREF1078_RS11855 0.74 +0.0 315,626 + HMPREF1078_RS11855 0.74 -1.8 315,731 - HMPREF1078_RS11855 0.78 +0.4 315,772 - HMPREF1078_RS11855 0.80 -1.8 315,775 + HMPREF1078_RS11855 0.80 -1.3 315,775 + HMPREF1078_RS11855 0.80 -2.7 315,775 + HMPREF1078_RS11855 0.80 +1.1 315,776 - HMPREF1078_RS11855 0.80 -0.6 315,776 - HMPREF1078_RS11855 0.80 +0.5 315,777 + HMPREF1078_RS11855 0.80 +0.6 315,961 + HMPREF1078_RS11855 0.87 -3.0 315,961 + HMPREF1078_RS11855 0.87 +0.6 316,015 + HMPREF1078_RS11855 0.89 -1.9 316,015 + HMPREF1078_RS11855 0.89 -0.5 316,054 + -0.8 316,080 + -0.9 316,162 + -0.5 316,300 + -3.6 316,315 + -3.9 316,321 + -0.1 316,321 + +0.3 316,326 - +0.2 316,339 - -1.2 316,345 + -0.1 316,347 + -3.3 316,347 + +0.6 316,347 + -1.0 316,347 + +2.2 316,348 - +1.0 316,348 - -1.1 316,348 - +1.0 316,381 + +0.6 316,408 - -1.7 316,427 + +0.3 316,428 - +0.6 316,476 - -0.4 316,601 + +0.9 316,602 - -1.6 316,642 + -0.3 316,687 + -2.9 316,691 - +0.1 316,940 - HMPREF1078_RS11860 0.15 -1.2 316,964 + HMPREF1078_RS11860 0.16 -2.9 316,965 - HMPREF1078_RS11860 0.16 -0.1 316,977 + HMPREF1078_RS11860 0.16 -1.7 317,063 + HMPREF1078_RS11860 0.21 +3.9 317,112 - HMPREF1078_RS11860 0.23 -1.6 317,242 + HMPREF1078_RS11860 0.29 -1.5
Or see this region's nucleotide sequence