Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09270 and HMPREF1078_RS09275 are separated by 5 nucleotides HMPREF1078_RS09275 and HMPREF1078_RS09280 are separated by 36 nucleotides HMPREF1078_RS09280 and HMPREF1078_RS09285 overlap by 7 nucleotides HMPREF1078_RS09285 and HMPREF1078_RS09290 are separated by 177 nucleotides HMPREF1078_RS09290 and HMPREF1078_RS09295 are separated by 36 nucleotides HMPREF1078_RS09295 and HMPREF1078_RS09300 overlap by 4 nucleotides
HMPREF1078_RS09270: HMPREF1078_RS09270 - ParA family protein, at 444,209 to 444,967
_RS09270
HMPREF1078_RS09275: HMPREF1078_RS09275 - DUF3408 domain-containing protein, at 444,973 to 445,389
_RS09275
HMPREF1078_RS09280: HMPREF1078_RS09280 - DUF3408 domain-containing protein, at 445,426 to 445,722
_RS09280
HMPREF1078_RS09285: HMPREF1078_RS09285 - hypothetical protein, at 445,716 to 446,390
_RS09285
HMPREF1078_RS09290: HMPREF1078_RS09290 - DUF4134 domain-containing protein, at 446,568 to 446,879
_RS09290
HMPREF1078_RS09295: HMPREF1078_RS09295 - DUF4133 domain-containing protein, at 446,916 to 447,248
_RS09295
HMPREF1078_RS09300: HMPREF1078_RS09300 - TraG family conjugative transposon ATPase, at 447,245 to 449,761
_RS09300
Position (kb) 445
446
447 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 444.946 kb on - strand at 444.946 kb on - strand at 445.005 kb on - strand at 445.101 kb on - strand, within HMPREF1078_RS09275 at 445.132 kb on - strand, within HMPREF1078_RS09275 at 445.475 kb on - strand, within HMPREF1078_RS09280 at 445.716 kb on - strand at 445.962 kb on - strand, within HMPREF1078_RS09285 at 446.348 kb on - strand at 446.387 kb on - strand at 446.387 kb on - strand at 446.387 kb on - strand at 446.389 kb on - strand at 446.397 kb on - strand at 446.397 kb on - strand at 446.406 kb on - strand at 446.507 kb on - strand at 446.533 kb on - strand at 446.695 kb on - strand, within HMPREF1078_RS09290 at 446.695 kb on - strand, within HMPREF1078_RS09290 at 446.895 kb on - strand at 446.895 kb on - strand at 446.897 kb on - strand at 446.897 kb on - strand at 446.899 kb on - strand at 446.899 kb on - strand at 446.899 kb on - strand at 446.902 kb on - strand at 446.902 kb on - strand at 446.983 kb on - strand, within HMPREF1078_RS09295 at 447.039 kb on + strand, within HMPREF1078_RS09295 at 447.218 kb on - strand at 447.218 kb on - strand at 447.372 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 444,946 - -0.6 444,946 - -0.7 445,005 - +0.9 445,101 - HMPREF1078_RS09275 0.31 -1.1 445,132 - HMPREF1078_RS09275 0.38 +0.2 445,475 - HMPREF1078_RS09280 0.16 +1.2 445,716 - -0.3 445,962 - HMPREF1078_RS09285 0.36 -1.9 446,348 - -0.4 446,387 - +0.6 446,387 - -2.3 446,387 - +3.2 446,389 - +1.2 446,397 - +0.5 446,397 - -1.6 446,406 - -0.9 446,507 - +0.3 446,533 - -1.0 446,695 - HMPREF1078_RS09290 0.41 -0.9 446,695 - HMPREF1078_RS09290 0.41 -0.1 446,895 - -1.3 446,895 - -1.9 446,897 - +0.4 446,897 - -0.8 446,899 - -1.4 446,899 - +0.7 446,899 - -0.8 446,902 - +0.0 446,902 - -1.3 446,983 - HMPREF1078_RS09295 0.20 +0.4 447,039 + HMPREF1078_RS09295 0.37 -0.8 447,218 - +1.0 447,218 - +0.7 447,372 - +0.9
Or see this region's nucleotide sequence