Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07595 and HMPREF1078_RS07600 are separated by 121 nucleotides HMPREF1078_RS07600 and HMPREF1078_RS07605 are separated by 36 nucleotides HMPREF1078_RS07605 and HMPREF1078_RS07610 are separated by 57 nucleotides
HMPREF1078_RS07595: HMPREF1078_RS07595 - pyridoxal phosphate-dependent aminotransferase, at 54,726 to 56,039
_RS07595
HMPREF1078_RS07600: HMPREF1078_RS07600 - YqgE/AlgH family protein, at 56,161 to 56,757
_RS07600
HMPREF1078_RS07605: HMPREF1078_RS07605 - GNAT family N-acetyltransferase, at 56,794 to 57,327
_RS07605
HMPREF1078_RS07610: HMPREF1078_RS07610 - glycosyltransferase family 2 protein, at 57,385 to 58,542
_RS07610
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9
10 at 55.813 kb on + strand, within HMPREF1078_RS07595 at 55.813 kb on + strand, within HMPREF1078_RS07595 at 55.814 kb on - strand, within HMPREF1078_RS07595 at 55.840 kb on - strand, within HMPREF1078_RS07595 at 55.893 kb on - strand, within HMPREF1078_RS07595 at 55.896 kb on + strand, within HMPREF1078_RS07595 at 55.937 kb on + strand at 55.951 kb on + strand at 55.961 kb on + strand at 55.962 kb on - strand at 55.970 kb on + strand at 55.987 kb on - strand at 56.037 kb on + strand at 56.038 kb on - strand at 56.038 kb on - strand at 56.060 kb on - strand at 56.060 kb on - strand at 56.073 kb on + strand at 56.118 kb on + strand at 56.122 kb on + strand at 56.122 kb on + strand at 56.123 kb on - strand at 56.123 kb on - strand at 56.123 kb on - strand at 56.136 kb on + strand at 56.136 kb on + strand at 56.150 kb on + strand at 56.151 kb on - strand at 56.170 kb on + strand at 56.170 kb on + strand at 56.170 kb on + strand at 56.170 kb on + strand at 56.170 kb on + strand at 56.171 kb on - strand at 56.172 kb on + strand at 56.180 kb on + strand at 56.181 kb on - strand at 56.181 kb on - strand at 56.181 kb on - strand at 56.189 kb on + strand at 56.279 kb on + strand, within HMPREF1078_RS07600 at 56.280 kb on - strand, within HMPREF1078_RS07600 at 56.285 kb on + strand, within HMPREF1078_RS07600 at 56.285 kb on + strand, within HMPREF1078_RS07600 at 56.285 kb on + strand, within HMPREF1078_RS07600 at 56.285 kb on + strand, within HMPREF1078_RS07600 at 56.292 kb on + strand, within HMPREF1078_RS07600 at 56.292 kb on + strand, within HMPREF1078_RS07600 at 56.292 kb on + strand, within HMPREF1078_RS07600 at 56.319 kb on - strand, within HMPREF1078_RS07600 at 56.322 kb on - strand, within HMPREF1078_RS07600 at 56.322 kb on - strand, within HMPREF1078_RS07600 at 56.367 kb on - strand, within HMPREF1078_RS07600 at 56.384 kb on + strand, within HMPREF1078_RS07600 at 56.450 kb on + strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.451 kb on - strand, within HMPREF1078_RS07600 at 56.460 kb on + strand, within HMPREF1078_RS07600 at 56.461 kb on - strand, within HMPREF1078_RS07600 at 56.475 kb on - strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.516 kb on + strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.517 kb on - strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.521 kb on + strand, within HMPREF1078_RS07600 at 56.522 kb on - strand, within HMPREF1078_RS07600 at 56.524 kb on - strand, within HMPREF1078_RS07600 at 56.568 kb on - strand, within HMPREF1078_RS07600 at 56.609 kb on + strand, within HMPREF1078_RS07600 at 56.629 kb on + strand, within HMPREF1078_RS07600 at 56.630 kb on + strand, within HMPREF1078_RS07600 at 56.658 kb on - strand, within HMPREF1078_RS07600 at 56.713 kb on + strand at 56.714 kb on - strand at 56.755 kb on + strand at 56.770 kb on + strand at 56.781 kb on - strand at 56.850 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.872 kb on + strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.873 kb on - strand, within HMPREF1078_RS07605 at 56.874 kb on + strand, within HMPREF1078_RS07605 at 56.875 kb on - strand, within HMPREF1078_RS07605 at 56.926 kb on - strand, within HMPREF1078_RS07605 at 57.081 kb on - strand, within HMPREF1078_RS07605 at 57.096 kb on + strand, within HMPREF1078_RS07605 at 57.158 kb on - strand, within HMPREF1078_RS07605 at 57.178 kb on + strand, within HMPREF1078_RS07605 at 57.179 kb on - strand, within HMPREF1078_RS07605 at 57.180 kb on + strand, within HMPREF1078_RS07605 at 57.180 kb on + strand, within HMPREF1078_RS07605 at 57.181 kb on - strand, within HMPREF1078_RS07605 at 57.181 kb on - strand, within HMPREF1078_RS07605 at 57.181 kb on - strand, within HMPREF1078_RS07605 at 57.207 kb on - strand, within HMPREF1078_RS07605 at 57.260 kb on + strand, within HMPREF1078_RS07605 at 57.356 kb on + strand at 57.397 kb on + strand at 57.398 kb on - strand at 57.414 kb on + strand at 57.414 kb on + strand at 57.414 kb on + strand at 57.415 kb on - strand at 57.415 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.419 kb on - strand at 57.420 kb on + strand at 57.425 kb on + strand at 57.425 kb on + strand at 57.425 kb on + strand at 57.426 kb on - strand at 57.460 kb on + strand at 57.460 kb on + strand at 57.510 kb on + strand, within HMPREF1078_RS07610 at 57.540 kb on + strand, within HMPREF1078_RS07610 at 57.540 kb on + strand, within HMPREF1078_RS07610 at 57.540 kb on + strand, within HMPREF1078_RS07610 at 57.541 kb on - strand, within HMPREF1078_RS07610 at 57.541 kb on - strand, within HMPREF1078_RS07610 at 57.541 kb on - strand, within HMPREF1078_RS07610 at 57.584 kb on + strand, within HMPREF1078_RS07610 at 57.584 kb on + strand, within HMPREF1078_RS07610 at 57.585 kb on - strand, within HMPREF1078_RS07610 at 57.785 kb on + strand, within HMPREF1078_RS07610 at 57.796 kb on + strand, within HMPREF1078_RS07610 at 57.815 kb on + strand, within HMPREF1078_RS07610 at 57.830 kb on + strand, within HMPREF1078_RS07610 at 57.831 kb on - strand, within HMPREF1078_RS07610 at 57.831 kb on - strand, within HMPREF1078_RS07610 at 57.865 kb on - strand, within HMPREF1078_RS07610 at 57.891 kb on - strand, within HMPREF1078_RS07610 at 57.893 kb on + strand, within HMPREF1078_RS07610 at 57.948 kb on - strand, within HMPREF1078_RS07610 at 57.948 kb on - strand, within HMPREF1078_RS07610 at 57.952 kb on - strand, within HMPREF1078_RS07610 at 57.981 kb on + strand, within HMPREF1078_RS07610 at 58.035 kb on + strand, within HMPREF1078_RS07610 at 58.036 kb on - strand, within HMPREF1078_RS07610 at 58.058 kb on + strand, within HMPREF1078_RS07610 at 58.299 kb on - strand, within HMPREF1078_RS07610
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 55,813 + HMPREF1078_RS07595 0.83 -0.8 55,813 + HMPREF1078_RS07595 0.83 +1.7 55,814 - HMPREF1078_RS07595 0.83 -0.9 55,840 - HMPREF1078_RS07595 0.85 -0.2 55,893 - HMPREF1078_RS07595 0.89 -0.5 55,896 + HMPREF1078_RS07595 0.89 +0.1 55,937 + +0.2 55,951 + -1.7 55,961 + -1.1 55,962 - -2.1 55,970 + -1.3 55,987 - -0.1 56,037 + +0.8 56,038 - +1.2 56,038 - -2.0 56,060 - -0.3 56,060 - -0.5 56,073 + +0.9 56,118 + +1.6 56,122 + +0.7 56,122 + +0.0 56,123 - -0.9 56,123 - +1.2 56,123 - +0.3 56,136 + +0.1 56,136 + -1.4 56,150 + +1.9 56,151 - +0.3 56,170 + +1.0 56,170 + -1.7 56,170 + -0.3 56,170 + -0.8 56,170 + +0.7 56,171 - +0.1 56,172 + +0.2 56,180 + +0.3 56,181 - -0.5 56,181 - +0.9 56,181 - -2.2 56,189 + -1.3 56,279 + HMPREF1078_RS07600 0.20 -0.6 56,280 - HMPREF1078_RS07600 0.20 -0.7 56,285 + HMPREF1078_RS07600 0.21 -0.9 56,285 + HMPREF1078_RS07600 0.21 +2.2 56,285 + HMPREF1078_RS07600 0.21 +1.3 56,285 + HMPREF1078_RS07600 0.21 -0.9 56,292 + HMPREF1078_RS07600 0.22 -2.7 56,292 + HMPREF1078_RS07600 0.22 +2.3 56,292 + HMPREF1078_RS07600 0.22 -1.7 56,319 - HMPREF1078_RS07600 0.26 -0.6 56,322 - HMPREF1078_RS07600 0.27 +0.7 56,322 - HMPREF1078_RS07600 0.27 -1.5 56,367 - HMPREF1078_RS07600 0.35 -1.5 56,384 + HMPREF1078_RS07600 0.37 +0.6 56,450 + HMPREF1078_RS07600 0.48 -0.9 56,451 - HMPREF1078_RS07600 0.49 -0.6 56,451 - HMPREF1078_RS07600 0.49 -0.8 56,451 - HMPREF1078_RS07600 0.49 -0.7 56,460 + HMPREF1078_RS07600 0.50 +1.7 56,461 - HMPREF1078_RS07600 0.50 +0.1 56,475 - HMPREF1078_RS07600 0.53 -0.6 56,516 + HMPREF1078_RS07600 0.59 -0.7 56,516 + HMPREF1078_RS07600 0.59 +1.7 56,516 + HMPREF1078_RS07600 0.59 -1.3 56,517 - HMPREF1078_RS07600 0.60 -0.8 56,517 - HMPREF1078_RS07600 0.60 -0.8 56,517 - HMPREF1078_RS07600 0.60 -0.4 56,517 - HMPREF1078_RS07600 0.60 +0.4 56,517 - HMPREF1078_RS07600 0.60 +0.2 56,517 - HMPREF1078_RS07600 0.60 -1.2 56,521 + HMPREF1078_RS07600 0.60 +10.2 56,521 + HMPREF1078_RS07600 0.60 +0.6 56,521 + HMPREF1078_RS07600 0.60 -0.1 56,521 + HMPREF1078_RS07600 0.60 +1.0 56,521 + HMPREF1078_RS07600 0.60 +0.4 56,522 - HMPREF1078_RS07600 0.60 -0.0 56,524 - HMPREF1078_RS07600 0.61 +0.3 56,568 - HMPREF1078_RS07600 0.68 +0.6 56,609 + HMPREF1078_RS07600 0.75 +0.4 56,629 + HMPREF1078_RS07600 0.78 -2.0 56,630 + HMPREF1078_RS07600 0.79 -1.4 56,658 - HMPREF1078_RS07600 0.83 -1.2 56,713 + +1.2 56,714 - -1.3 56,755 + -0.6 56,770 + +0.7 56,781 - -1.6 56,850 + HMPREF1078_RS07605 0.10 -0.1 56,872 + HMPREF1078_RS07605 0.15 -2.1 56,872 + HMPREF1078_RS07605 0.15 -2.4 56,872 + HMPREF1078_RS07605 0.15 +2.5 56,873 - HMPREF1078_RS07605 0.15 -0.7 56,873 - HMPREF1078_RS07605 0.15 -1.1 56,873 - HMPREF1078_RS07605 0.15 -1.0 56,874 + HMPREF1078_RS07605 0.15 +0.2 56,875 - HMPREF1078_RS07605 0.15 +1.0 56,926 - HMPREF1078_RS07605 0.25 -2.5 57,081 - HMPREF1078_RS07605 0.54 -0.2 57,096 + HMPREF1078_RS07605 0.57 -1.1 57,158 - HMPREF1078_RS07605 0.68 -0.7 57,178 + HMPREF1078_RS07605 0.72 -0.0 57,179 - HMPREF1078_RS07605 0.72 -0.1 57,180 + HMPREF1078_RS07605 0.72 -1.2 57,180 + HMPREF1078_RS07605 0.72 -1.5 57,181 - HMPREF1078_RS07605 0.72 +0.2 57,181 - HMPREF1078_RS07605 0.72 -0.1 57,181 - HMPREF1078_RS07605 0.72 +0.3 57,207 - HMPREF1078_RS07605 0.77 -1.6 57,260 + HMPREF1078_RS07605 0.87 +1.2 57,356 + -0.5 57,397 + +1.4 57,398 - -0.7 57,414 + -0.3 57,414 + +1.1 57,414 + -0.0 57,415 - +1.0 57,415 - +0.6 57,419 - +1.6 57,419 - +1.1 57,419 - +1.2 57,419 - +1.2 57,419 - -0.8 57,419 - -0.6 57,419 - +1.8 57,420 + -0.2 57,425 + -2.2 57,425 + -0.6 57,425 + +0.6 57,426 - -1.5 57,460 + +1.2 57,460 + +2.2 57,510 + HMPREF1078_RS07610 0.11 +0.0 57,540 + HMPREF1078_RS07610 0.13 -1.9 57,540 + HMPREF1078_RS07610 0.13 +2.0 57,540 + HMPREF1078_RS07610 0.13 +0.3 57,541 - HMPREF1078_RS07610 0.13 +0.4 57,541 - HMPREF1078_RS07610 0.13 -1.0 57,541 - HMPREF1078_RS07610 0.13 +1.1 57,584 + HMPREF1078_RS07610 0.17 +0.1 57,584 + HMPREF1078_RS07610 0.17 -1.8 57,585 - HMPREF1078_RS07610 0.17 -2.4 57,785 + HMPREF1078_RS07610 0.35 -0.3 57,796 + HMPREF1078_RS07610 0.35 -0.9 57,815 + HMPREF1078_RS07610 0.37 -1.7 57,830 + HMPREF1078_RS07610 0.38 -0.6 57,831 - HMPREF1078_RS07610 0.39 +1.2 57,831 - HMPREF1078_RS07610 0.39 +0.1 57,865 - HMPREF1078_RS07610 0.41 -1.1 57,891 - HMPREF1078_RS07610 0.44 -0.8 57,893 + HMPREF1078_RS07610 0.44 +0.1 57,948 - HMPREF1078_RS07610 0.49 +1.5 57,948 - HMPREF1078_RS07610 0.49 -1.6 57,952 - HMPREF1078_RS07610 0.49 -0.8 57,981 + HMPREF1078_RS07610 0.51 -0.2 58,035 + HMPREF1078_RS07610 0.56 -2.2 58,036 - HMPREF1078_RS07610 0.56 -0.2 58,058 + HMPREF1078_RS07610 0.58 -2.0 58,299 - HMPREF1078_RS07610 0.79 -0.1
Or see this region's nucleotide sequence