Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS19805 and HMPREF1078_RS06530 are separated by 72 nucleotides HMPREF1078_RS06530 and HMPREF1078_RS06535 are separated by 86 nucleotides
HMPREF1078_RS19805: HMPREF1078_RS19805 - T9SS type A sorting domain-containing protein, at 688,493 to 689,848
_RS19805
HMPREF1078_RS06530: HMPREF1078_RS06530 - radical SAM protein, at 689,921 to 690,700
_RS06530
HMPREF1078_RS06535: HMPREF1078_RS06535 - helix-hairpin-helix domain-containing protein, at 690,787 to 692,724
_RS06535
Position (kb) 689
690
691 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 688.953 kb on + strand, within HMPREF1078_RS19805 at 688.974 kb on - strand, within HMPREF1078_RS19805 at 688.974 kb on - strand, within HMPREF1078_RS19805 at 688.974 kb on - strand, within HMPREF1078_RS19805 at 688.989 kb on + strand, within HMPREF1078_RS19805 at 688.989 kb on + strand, within HMPREF1078_RS19805 at 689.028 kb on + strand, within HMPREF1078_RS19805 at 689.095 kb on - strand, within HMPREF1078_RS19805 at 689.120 kb on - strand, within HMPREF1078_RS19805 at 689.213 kb on + strand, within HMPREF1078_RS19805 at 689.214 kb on - strand, within HMPREF1078_RS19805 at 689.214 kb on - strand, within HMPREF1078_RS19805 at 689.219 kb on + strand, within HMPREF1078_RS19805 at 689.300 kb on - strand, within HMPREF1078_RS19805 at 689.301 kb on + strand, within HMPREF1078_RS19805 at 689.301 kb on + strand, within HMPREF1078_RS19805 at 689.301 kb on + strand, within HMPREF1078_RS19805 at 689.301 kb on + strand, within HMPREF1078_RS19805 at 689.302 kb on - strand, within HMPREF1078_RS19805 at 689.302 kb on - strand, within HMPREF1078_RS19805 at 689.309 kb on - strand, within HMPREF1078_RS19805 at 689.311 kb on - strand, within HMPREF1078_RS19805 at 689.344 kb on + strand, within HMPREF1078_RS19805 at 689.345 kb on - strand, within HMPREF1078_RS19805 at 689.430 kb on + strand, within HMPREF1078_RS19805 at 689.431 kb on - strand, within HMPREF1078_RS19805 at 689.438 kb on + strand, within HMPREF1078_RS19805 at 689.439 kb on - strand, within HMPREF1078_RS19805 at 689.439 kb on - strand, within HMPREF1078_RS19805 at 689.452 kb on + strand, within HMPREF1078_RS19805 at 689.452 kb on + strand, within HMPREF1078_RS19805 at 689.498 kb on + strand, within HMPREF1078_RS19805 at 689.498 kb on + strand, within HMPREF1078_RS19805 at 689.500 kb on + strand, within HMPREF1078_RS19805 at 689.501 kb on - strand, within HMPREF1078_RS19805 at 689.501 kb on - strand, within HMPREF1078_RS19805 at 689.501 kb on - strand, within HMPREF1078_RS19805 at 689.503 kb on - strand, within HMPREF1078_RS19805 at 689.518 kb on + strand, within HMPREF1078_RS19805 at 689.524 kb on + strand, within HMPREF1078_RS19805 at 689.524 kb on + strand, within HMPREF1078_RS19805 at 689.528 kb on - strand, within HMPREF1078_RS19805 at 689.551 kb on - strand, within HMPREF1078_RS19805 at 689.551 kb on - strand, within HMPREF1078_RS19805 at 689.551 kb on - strand, within HMPREF1078_RS19805 at 689.595 kb on + strand, within HMPREF1078_RS19805 at 689.601 kb on + strand, within HMPREF1078_RS19805 at 689.654 kb on - strand, within HMPREF1078_RS19805 at 689.697 kb on + strand, within HMPREF1078_RS19805 at 689.698 kb on - strand, within HMPREF1078_RS19805 at 689.787 kb on - strand at 689.803 kb on + strand at 689.804 kb on - strand at 689.819 kb on - strand at 689.853 kb on + strand at 689.887 kb on + strand at 689.888 kb on - strand at 689.971 kb on + strand at 689.977 kb on - strand at 690.044 kb on - strand, within HMPREF1078_RS06530 at 690.044 kb on - strand, within HMPREF1078_RS06530 at 690.232 kb on - strand, within HMPREF1078_RS06530 at 690.275 kb on + strand, within HMPREF1078_RS06530 at 690.277 kb on + strand, within HMPREF1078_RS06530 at 690.277 kb on + strand, within HMPREF1078_RS06530 at 690.278 kb on - strand, within HMPREF1078_RS06530 at 690.278 kb on - strand, within HMPREF1078_RS06530 at 690.278 kb on - strand, within HMPREF1078_RS06530 at 690.280 kb on + strand, within HMPREF1078_RS06530 at 690.280 kb on + strand, within HMPREF1078_RS06530 at 690.280 kb on + strand, within HMPREF1078_RS06530 at 690.280 kb on + strand, within HMPREF1078_RS06530 at 690.319 kb on + strand, within HMPREF1078_RS06530 at 690.391 kb on + strand, within HMPREF1078_RS06530 at 690.391 kb on + strand, within HMPREF1078_RS06530 at 690.392 kb on - strand, within HMPREF1078_RS06530 at 690.427 kb on + strand, within HMPREF1078_RS06530 at 690.427 kb on + strand, within HMPREF1078_RS06530 at 690.428 kb on - strand, within HMPREF1078_RS06530 at 690.455 kb on + strand, within HMPREF1078_RS06530 at 690.455 kb on + strand, within HMPREF1078_RS06530 at 690.456 kb on - strand, within HMPREF1078_RS06530 at 690.456 kb on - strand, within HMPREF1078_RS06530 at 690.496 kb on + strand, within HMPREF1078_RS06530 at 690.613 kb on + strand, within HMPREF1078_RS06530 at 690.629 kb on - strand at 690.644 kb on + strand at 690.656 kb on - strand at 690.675 kb on - strand at 690.703 kb on + strand at 690.703 kb on + strand at 690.704 kb on - strand at 690.749 kb on + strand at 690.810 kb on + strand at 690.810 kb on + strand at 690.810 kb on + strand at 690.811 kb on - strand at 690.811 kb on - strand at 690.812 kb on + strand at 690.812 kb on + strand at 690.812 kb on + strand at 690.813 kb on - strand at 690.813 kb on - strand at 690.813 kb on - strand at 690.813 kb on - strand at 690.813 kb on - strand at 690.813 kb on - strand at 690.813 kb on - strand at 690.814 kb on + strand at 690.815 kb on - strand at 690.815 kb on - strand at 690.816 kb on + strand at 690.817 kb on - strand at 690.878 kb on + strand at 690.879 kb on - strand at 690.879 kb on - strand at 690.879 kb on - strand at 690.881 kb on + strand at 690.882 kb on - strand at 690.888 kb on - strand at 690.893 kb on - strand at 690.979 kb on - strand at 691.007 kb on + strand, within HMPREF1078_RS06535 at 691.008 kb on - strand, within HMPREF1078_RS06535 at 691.016 kb on - strand, within HMPREF1078_RS06535 at 691.017 kb on + strand, within HMPREF1078_RS06535 at 691.028 kb on + strand, within HMPREF1078_RS06535 at 691.032 kb on + strand, within HMPREF1078_RS06535 at 691.033 kb on - strand, within HMPREF1078_RS06535 at 691.097 kb on - strand, within HMPREF1078_RS06535 at 691.143 kb on + strand, within HMPREF1078_RS06535 at 691.143 kb on + strand, within HMPREF1078_RS06535 at 691.194 kb on + strand, within HMPREF1078_RS06535 at 691.195 kb on - strand, within HMPREF1078_RS06535 at 691.195 kb on - strand, within HMPREF1078_RS06535 at 691.195 kb on - strand, within HMPREF1078_RS06535 at 691.196 kb on + strand, within HMPREF1078_RS06535 at 691.196 kb on + strand, within HMPREF1078_RS06535 at 691.198 kb on + strand, within HMPREF1078_RS06535 at 691.199 kb on - strand, within HMPREF1078_RS06535 at 691.229 kb on + strand, within HMPREF1078_RS06535 at 691.229 kb on + strand, within HMPREF1078_RS06535 at 691.229 kb on + strand, within HMPREF1078_RS06535 at 691.272 kb on - strand, within HMPREF1078_RS06535 at 691.272 kb on - strand, within HMPREF1078_RS06535 at 691.272 kb on - strand, within HMPREF1078_RS06535 at 691.272 kb on - strand, within HMPREF1078_RS06535 at 691.272 kb on - strand, within HMPREF1078_RS06535 at 691.273 kb on + strand, within HMPREF1078_RS06535 at 691.274 kb on - strand, within HMPREF1078_RS06535 at 691.296 kb on + strand, within HMPREF1078_RS06535 at 691.314 kb on + strand, within HMPREF1078_RS06535 at 691.315 kb on - strand, within HMPREF1078_RS06535 at 691.316 kb on + strand, within HMPREF1078_RS06535 at 691.316 kb on + strand, within HMPREF1078_RS06535 at 691.317 kb on - strand, within HMPREF1078_RS06535 at 691.317 kb on - strand, within HMPREF1078_RS06535 at 691.372 kb on + strand, within HMPREF1078_RS06535 at 691.426 kb on + strand, within HMPREF1078_RS06535 at 691.427 kb on - strand, within HMPREF1078_RS06535 at 691.427 kb on - strand, within HMPREF1078_RS06535 at 691.428 kb on + strand, within HMPREF1078_RS06535 at 691.428 kb on + strand, within HMPREF1078_RS06535 at 691.429 kb on - strand, within HMPREF1078_RS06535 at 691.430 kb on + strand, within HMPREF1078_RS06535 at 691.431 kb on - strand, within HMPREF1078_RS06535 at 691.431 kb on - strand, within HMPREF1078_RS06535 at 691.505 kb on + strand, within HMPREF1078_RS06535 at 691.505 kb on + strand, within HMPREF1078_RS06535 at 691.514 kb on + strand, within HMPREF1078_RS06535 at 691.515 kb on - strand, within HMPREF1078_RS06535 at 691.650 kb on + strand, within HMPREF1078_RS06535 at 691.652 kb on + strand, within HMPREF1078_RS06535 at 691.687 kb on - strand, within HMPREF1078_RS06535
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 688,953 + HMPREF1078_RS19805 0.34 -1.3 688,974 - HMPREF1078_RS19805 0.35 -0.2 688,974 - HMPREF1078_RS19805 0.35 -0.7 688,974 - HMPREF1078_RS19805 0.35 +1.1 688,989 + HMPREF1078_RS19805 0.37 +0.4 688,989 + HMPREF1078_RS19805 0.37 +0.7 689,028 + HMPREF1078_RS19805 0.39 -1.2 689,095 - HMPREF1078_RS19805 0.44 +1.3 689,120 - HMPREF1078_RS19805 0.46 +1.2 689,213 + HMPREF1078_RS19805 0.53 -1.1 689,214 - HMPREF1078_RS19805 0.53 -0.5 689,214 - HMPREF1078_RS19805 0.53 -1.5 689,219 + HMPREF1078_RS19805 0.54 -0.2 689,300 - HMPREF1078_RS19805 0.60 -1.9 689,301 + HMPREF1078_RS19805 0.60 +0.7 689,301 + HMPREF1078_RS19805 0.60 +3.2 689,301 + HMPREF1078_RS19805 0.60 -1.7 689,301 + HMPREF1078_RS19805 0.60 -0.7 689,302 - HMPREF1078_RS19805 0.60 -0.6 689,302 - HMPREF1078_RS19805 0.60 +1.8 689,309 - HMPREF1078_RS19805 0.60 -1.0 689,311 - HMPREF1078_RS19805 0.60 -0.4 689,344 + HMPREF1078_RS19805 0.63 -0.3 689,345 - HMPREF1078_RS19805 0.63 -0.5 689,430 + HMPREF1078_RS19805 0.69 -0.2 689,431 - HMPREF1078_RS19805 0.69 -0.5 689,438 + HMPREF1078_RS19805 0.70 -2.0 689,439 - HMPREF1078_RS19805 0.70 +0.7 689,439 - HMPREF1078_RS19805 0.70 +0.8 689,452 + HMPREF1078_RS19805 0.71 -2.5 689,452 + HMPREF1078_RS19805 0.71 -0.9 689,498 + HMPREF1078_RS19805 0.74 -0.9 689,498 + HMPREF1078_RS19805 0.74 -0.7 689,500 + HMPREF1078_RS19805 0.74 +0.1 689,501 - HMPREF1078_RS19805 0.74 +1.0 689,501 - HMPREF1078_RS19805 0.74 -1.0 689,501 - HMPREF1078_RS19805 0.74 -0.3 689,503 - HMPREF1078_RS19805 0.74 -0.3 689,518 + HMPREF1078_RS19805 0.76 -0.2 689,524 + HMPREF1078_RS19805 0.76 +0.6 689,524 + HMPREF1078_RS19805 0.76 -0.1 689,528 - HMPREF1078_RS19805 0.76 +0.1 689,551 - HMPREF1078_RS19805 0.78 -1.6 689,551 - HMPREF1078_RS19805 0.78 +0.8 689,551 - HMPREF1078_RS19805 0.78 -0.5 689,595 + HMPREF1078_RS19805 0.81 +0.2 689,601 + HMPREF1078_RS19805 0.82 +1.3 689,654 - HMPREF1078_RS19805 0.86 -0.3 689,697 + HMPREF1078_RS19805 0.89 +0.5 689,698 - HMPREF1078_RS19805 0.89 +0.0 689,787 - -0.7 689,803 + -2.0 689,804 - -2.5 689,819 - +0.7 689,853 + -1.3 689,887 + -2.5 689,888 - -0.1 689,971 + +3.1 689,977 - +3.0 690,044 - HMPREF1078_RS06530 0.16 +1.6 690,044 - HMPREF1078_RS06530 0.16 +0.3 690,232 - HMPREF1078_RS06530 0.40 +2.0 690,275 + HMPREF1078_RS06530 0.45 +2.2 690,277 + HMPREF1078_RS06530 0.46 +2.9 690,277 + HMPREF1078_RS06530 0.46 +0.6 690,278 - HMPREF1078_RS06530 0.46 +2.4 690,278 - HMPREF1078_RS06530 0.46 +2.4 690,278 - HMPREF1078_RS06530 0.46 +0.5 690,280 + HMPREF1078_RS06530 0.46 +0.6 690,280 + HMPREF1078_RS06530 0.46 +1.9 690,280 + HMPREF1078_RS06530 0.46 +3.0 690,280 + HMPREF1078_RS06530 0.46 -1.3 690,319 + HMPREF1078_RS06530 0.51 -1.2 690,391 + HMPREF1078_RS06530 0.60 +2.3 690,391 + HMPREF1078_RS06530 0.60 +1.2 690,392 - HMPREF1078_RS06530 0.60 +1.0 690,427 + HMPREF1078_RS06530 0.65 +2.1 690,427 + HMPREF1078_RS06530 0.65 +1.3 690,428 - HMPREF1078_RS06530 0.65 +2.5 690,455 + HMPREF1078_RS06530 0.68 +3.7 690,455 + HMPREF1078_RS06530 0.68 +3.2 690,456 - HMPREF1078_RS06530 0.69 +2.8 690,456 - HMPREF1078_RS06530 0.69 +0.4 690,496 + HMPREF1078_RS06530 0.74 -1.4 690,613 + HMPREF1078_RS06530 0.89 +1.6 690,629 - +2.5 690,644 + +2.6 690,656 - +0.1 690,675 - +1.7 690,703 + +0.6 690,703 + +2.2 690,704 - +0.3 690,749 + -0.1 690,810 + -0.1 690,810 + -3.1 690,810 + +1.3 690,811 - +1.1 690,811 - -0.5 690,812 + +0.4 690,812 + +1.2 690,812 + -0.5 690,813 - -0.1 690,813 - -0.4 690,813 - +0.1 690,813 - +1.9 690,813 - +2.9 690,813 - -1.0 690,813 - +0.2 690,814 + -1.4 690,815 - -0.6 690,815 - -2.8 690,816 + -0.4 690,817 - -2.0 690,878 + +1.5 690,879 - -0.3 690,879 - -1.3 690,879 - -0.6 690,881 + -0.8 690,882 - -1.2 690,888 - -0.1 690,893 - +0.8 690,979 - +0.4 691,007 + HMPREF1078_RS06535 0.11 -0.2 691,008 - HMPREF1078_RS06535 0.11 -2.5 691,016 - HMPREF1078_RS06535 0.12 +0.7 691,017 + HMPREF1078_RS06535 0.12 -1.2 691,028 + HMPREF1078_RS06535 0.12 -0.2 691,032 + HMPREF1078_RS06535 0.13 -0.7 691,033 - HMPREF1078_RS06535 0.13 -1.0 691,097 - HMPREF1078_RS06535 0.16 -1.0 691,143 + HMPREF1078_RS06535 0.18 +1.4 691,143 + HMPREF1078_RS06535 0.18 +0.7 691,194 + HMPREF1078_RS06535 0.21 +0.1 691,195 - HMPREF1078_RS06535 0.21 +1.9 691,195 - HMPREF1078_RS06535 0.21 -0.0 691,195 - HMPREF1078_RS06535 0.21 +0.1 691,196 + HMPREF1078_RS06535 0.21 -1.6 691,196 + HMPREF1078_RS06535 0.21 +3.7 691,198 + HMPREF1078_RS06535 0.21 +0.7 691,199 - HMPREF1078_RS06535 0.21 -0.6 691,229 + HMPREF1078_RS06535 0.23 +0.3 691,229 + HMPREF1078_RS06535 0.23 -0.5 691,229 + HMPREF1078_RS06535 0.23 +2.2 691,272 - HMPREF1078_RS06535 0.25 +0.7 691,272 - HMPREF1078_RS06535 0.25 -1.2 691,272 - HMPREF1078_RS06535 0.25 +0.9 691,272 - HMPREF1078_RS06535 0.25 -0.2 691,272 - HMPREF1078_RS06535 0.25 -1.5 691,273 + HMPREF1078_RS06535 0.25 -1.4 691,274 - HMPREF1078_RS06535 0.25 -0.8 691,296 + HMPREF1078_RS06535 0.26 +0.6 691,314 + HMPREF1078_RS06535 0.27 +0.6 691,315 - HMPREF1078_RS06535 0.27 -0.4 691,316 + HMPREF1078_RS06535 0.27 -0.4 691,316 + HMPREF1078_RS06535 0.27 -0.1 691,317 - HMPREF1078_RS06535 0.27 +1.0 691,317 - HMPREF1078_RS06535 0.27 +1.9 691,372 + HMPREF1078_RS06535 0.30 +0.9 691,426 + HMPREF1078_RS06535 0.33 -0.4 691,427 - HMPREF1078_RS06535 0.33 +0.7 691,427 - HMPREF1078_RS06535 0.33 -1.3 691,428 + HMPREF1078_RS06535 0.33 +1.1 691,428 + HMPREF1078_RS06535 0.33 +0.2 691,429 - HMPREF1078_RS06535 0.33 +2.2 691,430 + HMPREF1078_RS06535 0.33 -0.7 691,431 - HMPREF1078_RS06535 0.33 -1.2 691,431 - HMPREF1078_RS06535 0.33 +1.5 691,505 + HMPREF1078_RS06535 0.37 +0.3 691,505 + HMPREF1078_RS06535 0.37 -2.3 691,514 + HMPREF1078_RS06535 0.38 -2.2 691,515 - HMPREF1078_RS06535 0.38 -0.5 691,650 + HMPREF1078_RS06535 0.45 +0.4 691,652 + HMPREF1078_RS06535 0.45 +0.0 691,687 - HMPREF1078_RS06535 0.46 -1.1
Or see this region's nucleotide sequence