Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03425 and HMPREF1078_RS03430 are separated by 79 nucleotides HMPREF1078_RS03430 and HMPREF1078_RS03435 are separated by 14 nucleotides HMPREF1078_RS03435 and HMPREF1078_RS03440 are separated by 96 nucleotides
HMPREF1078_RS03425: HMPREF1078_RS03425 - acetate--CoA ligase, at 808,030 to 810,090
_RS03425
HMPREF1078_RS03430: HMPREF1078_RS03430 - GTP-binding protein, at 810,170 to 810,742
_RS03430
HMPREF1078_RS03435: HMPREF1078_RS03435 - hydrogenase maturation nickel metallochaperone HypA, at 810,757 to 811,098
_RS03435
HMPREF1078_RS03440: HMPREF1078_RS03440 - Sua5/YciO/YrdC/YwlC family protein, at 811,195 to 813,063
_RS03440
Position (kb) 810
811 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 809.173 kb on - strand, within HMPREF1078_RS03425 at 809.208 kb on + strand, within HMPREF1078_RS03425 at 809.214 kb on + strand, within HMPREF1078_RS03425 at 809.215 kb on - strand, within HMPREF1078_RS03425 at 809.231 kb on - strand, within HMPREF1078_RS03425 at 809.231 kb on - strand, within HMPREF1078_RS03425 at 809.408 kb on + strand, within HMPREF1078_RS03425 at 809.409 kb on - strand, within HMPREF1078_RS03425 at 809.419 kb on - strand, within HMPREF1078_RS03425 at 809.444 kb on + strand, within HMPREF1078_RS03425 at 809.444 kb on + strand, within HMPREF1078_RS03425 at 809.444 kb on + strand, within HMPREF1078_RS03425 at 809.494 kb on - strand, within HMPREF1078_RS03425 at 809.495 kb on + strand, within HMPREF1078_RS03425 at 809.496 kb on - strand, within HMPREF1078_RS03425 at 809.676 kb on - strand, within HMPREF1078_RS03425 at 809.676 kb on - strand, within HMPREF1078_RS03425 at 809.682 kb on + strand, within HMPREF1078_RS03425 at 809.682 kb on + strand, within HMPREF1078_RS03425 at 809.682 kb on + strand, within HMPREF1078_RS03425 at 809.683 kb on - strand, within HMPREF1078_RS03425 at 809.818 kb on + strand, within HMPREF1078_RS03425 at 809.818 kb on + strand, within HMPREF1078_RS03425 at 809.819 kb on - strand, within HMPREF1078_RS03425 at 809.905 kb on - strand at 809.966 kb on + strand at 809.967 kb on - strand at 809.967 kb on - strand at 809.967 kb on - strand at 809.967 kb on - strand at 809.968 kb on + strand at 809.968 kb on + strand at 809.969 kb on - strand at 809.979 kb on + strand at 809.982 kb on - strand at 809.982 kb on - strand at 809.992 kb on + strand at 809.995 kb on + strand at 809.996 kb on - strand at 810.028 kb on + strand at 810.029 kb on - strand at 810.029 kb on - strand at 810.029 kb on - strand at 810.052 kb on + strand at 810.074 kb on - strand at 810.129 kb on + strand at 810.129 kb on + strand at 810.129 kb on + strand at 810.129 kb on + strand at 810.129 kb on + strand at 810.130 kb on - strand at 810.130 kb on - strand at 810.130 kb on - strand at 810.148 kb on + strand at 810.149 kb on - strand at 810.172 kb on - strand at 810.252 kb on - strand, within HMPREF1078_RS03430 at 810.350 kb on - strand, within HMPREF1078_RS03430 at 810.350 kb on - strand, within HMPREF1078_RS03430 at 810.367 kb on + strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.368 kb on - strand, within HMPREF1078_RS03430 at 810.376 kb on - strand, within HMPREF1078_RS03430 at 810.489 kb on - strand, within HMPREF1078_RS03430 at 810.503 kb on + strand, within HMPREF1078_RS03430 at 810.555 kb on + strand, within HMPREF1078_RS03430 at 810.570 kb on + strand, within HMPREF1078_RS03430 at 810.571 kb on - strand, within HMPREF1078_RS03430 at 810.580 kb on + strand, within HMPREF1078_RS03430 at 810.581 kb on - strand, within HMPREF1078_RS03430 at 810.581 kb on - strand, within HMPREF1078_RS03430 at 810.599 kb on - strand, within HMPREF1078_RS03430 at 810.614 kb on - strand, within HMPREF1078_RS03430 at 810.632 kb on + strand, within HMPREF1078_RS03430 at 810.632 kb on + strand, within HMPREF1078_RS03430 at 810.742 kb on + strand at 810.742 kb on + strand at 810.743 kb on - strand at 810.764 kb on - strand at 810.765 kb on + strand at 810.805 kb on - strand, within HMPREF1078_RS03435 at 810.808 kb on + strand, within HMPREF1078_RS03435 at 810.809 kb on - strand, within HMPREF1078_RS03435 at 810.816 kb on - strand, within HMPREF1078_RS03435 at 810.828 kb on + strand, within HMPREF1078_RS03435 at 810.899 kb on - strand, within HMPREF1078_RS03435 at 810.903 kb on - strand, within HMPREF1078_RS03435 at 810.913 kb on + strand, within HMPREF1078_RS03435 at 810.981 kb on - strand, within HMPREF1078_RS03435 at 811.099 kb on - strand at 811.111 kb on - strand at 811.111 kb on - strand at 811.112 kb on + strand at 811.132 kb on + strand at 811.133 kb on - strand at 811.133 kb on - strand at 811.133 kb on - strand at 811.154 kb on + strand at 811.154 kb on + strand at 811.155 kb on - strand at 811.155 kb on - strand at 811.156 kb on + strand at 811.156 kb on + strand at 811.157 kb on - strand at 811.176 kb on + strand at 811.177 kb on - strand at 811.177 kb on - strand at 811.179 kb on - strand at 811.193 kb on + strand at 811.194 kb on - strand at 811.194 kb on - strand at 811.196 kb on + strand at 811.197 kb on - strand at 811.198 kb on + strand at 811.199 kb on - strand at 811.264 kb on + strand at 811.264 kb on + strand at 811.266 kb on + strand at 811.266 kb on + strand at 811.266 kb on + strand at 811.266 kb on + strand at 811.266 kb on + strand at 811.267 kb on - strand at 811.267 kb on - strand at 811.267 kb on - strand at 811.429 kb on - strand, within HMPREF1078_RS03440 at 811.486 kb on + strand, within HMPREF1078_RS03440 at 811.516 kb on - strand, within HMPREF1078_RS03440 at 811.532 kb on - strand, within HMPREF1078_RS03440
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 809,173 - HMPREF1078_RS03425 0.55 -0.1 809,208 + HMPREF1078_RS03425 0.57 -0.4 809,214 + HMPREF1078_RS03425 0.57 -0.4 809,215 - HMPREF1078_RS03425 0.57 -0.7 809,231 - HMPREF1078_RS03425 0.58 -1.5 809,231 - HMPREF1078_RS03425 0.58 -2.0 809,408 + HMPREF1078_RS03425 0.67 +1.1 809,409 - HMPREF1078_RS03425 0.67 +2.9 809,419 - HMPREF1078_RS03425 0.67 -0.8 809,444 + HMPREF1078_RS03425 0.69 -0.0 809,444 + HMPREF1078_RS03425 0.69 +0.7 809,444 + HMPREF1078_RS03425 0.69 +0.3 809,494 - HMPREF1078_RS03425 0.71 -0.2 809,495 + HMPREF1078_RS03425 0.71 +0.3 809,496 - HMPREF1078_RS03425 0.71 +1.9 809,676 - HMPREF1078_RS03425 0.80 -0.7 809,676 - HMPREF1078_RS03425 0.80 -0.1 809,682 + HMPREF1078_RS03425 0.80 -0.3 809,682 + HMPREF1078_RS03425 0.80 +1.4 809,682 + HMPREF1078_RS03425 0.80 +0.9 809,683 - HMPREF1078_RS03425 0.80 -0.8 809,818 + HMPREF1078_RS03425 0.87 +1.1 809,818 + HMPREF1078_RS03425 0.87 +1.5 809,819 - HMPREF1078_RS03425 0.87 -1.0 809,905 - +1.9 809,966 + -0.4 809,967 - +1.3 809,967 - +1.3 809,967 - -1.2 809,967 - +1.1 809,968 + +0.3 809,968 + +2.1 809,969 - +0.6 809,979 + +1.5 809,982 - -1.0 809,982 - -0.3 809,992 + +4.2 809,995 + +0.2 809,996 - -1.3 810,028 + -0.4 810,029 - -0.8 810,029 - -1.3 810,029 - -0.2 810,052 + +2.1 810,074 - -0.0 810,129 + -0.9 810,129 + -0.6 810,129 + +0.2 810,129 + +0.5 810,129 + +0.5 810,130 - +0.6 810,130 - -1.6 810,130 - -0.7 810,148 + +0.2 810,149 - -1.0 810,172 - -1.7 810,252 - HMPREF1078_RS03430 0.14 -0.9 810,350 - HMPREF1078_RS03430 0.31 -1.7 810,350 - HMPREF1078_RS03430 0.31 -1.4 810,367 + HMPREF1078_RS03430 0.34 -1.8 810,368 - HMPREF1078_RS03430 0.35 -2.2 810,368 - HMPREF1078_RS03430 0.35 +3.2 810,368 - HMPREF1078_RS03430 0.35 +0.5 810,368 - HMPREF1078_RS03430 0.35 +0.5 810,368 - HMPREF1078_RS03430 0.35 -0.9 810,376 - HMPREF1078_RS03430 0.36 -0.6 810,489 - HMPREF1078_RS03430 0.56 -0.9 810,503 + HMPREF1078_RS03430 0.58 +1.9 810,555 + HMPREF1078_RS03430 0.67 -2.0 810,570 + HMPREF1078_RS03430 0.70 -1.7 810,571 - HMPREF1078_RS03430 0.70 +1.2 810,580 + HMPREF1078_RS03430 0.72 -1.8 810,581 - HMPREF1078_RS03430 0.72 +0.5 810,581 - HMPREF1078_RS03430 0.72 -3.7 810,599 - HMPREF1078_RS03430 0.75 +0.3 810,614 - HMPREF1078_RS03430 0.77 -1.6 810,632 + HMPREF1078_RS03430 0.81 +0.7 810,632 + HMPREF1078_RS03430 0.81 +1.2 810,742 + +0.5 810,742 + -1.0 810,743 - +1.3 810,764 - -0.5 810,765 + -0.8 810,805 - HMPREF1078_RS03435 0.14 -0.0 810,808 + HMPREF1078_RS03435 0.15 +1.4 810,809 - HMPREF1078_RS03435 0.15 -2.8 810,816 - HMPREF1078_RS03435 0.17 -0.9 810,828 + HMPREF1078_RS03435 0.21 -1.6 810,899 - HMPREF1078_RS03435 0.42 +0.1 810,903 - HMPREF1078_RS03435 0.43 +0.7 810,913 + HMPREF1078_RS03435 0.46 -2.3 810,981 - HMPREF1078_RS03435 0.65 -0.1 811,099 - -0.9 811,111 - -1.1 811,111 - -0.8 811,112 + +2.2 811,132 + +0.1 811,133 - -1.1 811,133 - -0.6 811,133 - +1.1 811,154 + -0.3 811,154 + +0.7 811,155 - -1.5 811,155 - -2.0 811,156 + +1.1 811,156 + -2.4 811,157 - -1.3 811,176 + +0.5 811,177 - +0.2 811,177 - -1.7 811,179 - +1.1 811,193 + -1.7 811,194 - +1.1 811,194 - -0.8 811,196 + +0.7 811,197 - +2.1 811,198 + -0.1 811,199 - -0.6 811,264 + +1.5 811,264 + -1.0 811,266 + -0.1 811,266 + +0.9 811,266 + -0.2 811,266 + -0.1 811,266 + -1.5 811,267 - +1.0 811,267 - -1.4 811,267 - +2.3 811,429 - HMPREF1078_RS03440 0.13 -2.2 811,486 + HMPREF1078_RS03440 0.16 -0.4 811,516 - HMPREF1078_RS03440 0.17 +0.3 811,532 - HMPREF1078_RS03440 0.18 -0.7
Or see this region's nucleotide sequence