Experiment: D-Maltose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03330 and HMPREF1078_RS03335 are separated by 19 nucleotides HMPREF1078_RS03335 and HMPREF1078_RS03340 overlap by 7 nucleotides HMPREF1078_RS03340 and HMPREF1078_RS03345 are separated by 15 nucleotides HMPREF1078_RS03345 and HMPREF1078_RS03350 are separated by 12 nucleotides HMPREF1078_RS03350 and HMPREF1078_RS03355 are separated by 66 nucleotides
HMPREF1078_RS03330: HMPREF1078_RS03330 - hypothetical protein, at 786,377 to 787,072
_RS03330
HMPREF1078_RS03335: HMPREF1078_RS03335 - hypothetical protein, at 787,092 to 787,832
_RS03335
HMPREF1078_RS03340: HMPREF1078_RS03340 - TraG family conjugative transposon ATPase, at 787,826 to 790,660
_RS03340
HMPREF1078_RS03345: HMPREF1078_RS03345 - hypothetical protein, at 790,676 to 790,966
_RS03345
HMPREF1078_RS03350: HMPREF1078_RS03350 - DUF4134 domain-containing protein, at 790,979 to 791,335
_RS03350
HMPREF1078_RS03355: HMPREF1078_RS03355 - hypothetical protein, at 791,402 to 791,836
_RS03355
Position (kb) 787
788
789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 786.993 kb on - strand, within HMPREF1078_RS03330 at 787.031 kb on + strand at 787.032 kb on - strand at 787.033 kb on + strand at 787.033 kb on + strand at 787.044 kb on + strand at 787.051 kb on + strand at 787.055 kb on + strand at 787.055 kb on + strand at 787.056 kb on - strand at 787.057 kb on + strand at 787.081 kb on + strand at 787.081 kb on + strand at 787.082 kb on - strand at 787.083 kb on + strand at 787.084 kb on - strand at 787.128 kb on + strand at 787.216 kb on + strand, within HMPREF1078_RS03335 at 787.217 kb on - strand, within HMPREF1078_RS03335 at 787.217 kb on - strand, within HMPREF1078_RS03335 at 787.217 kb on - strand, within HMPREF1078_RS03335 at 787.249 kb on + strand, within HMPREF1078_RS03335 at 787.249 kb on + strand, within HMPREF1078_RS03335 at 787.249 kb on + strand, within HMPREF1078_RS03335 at 787.250 kb on - strand, within HMPREF1078_RS03335 at 787.255 kb on - strand, within HMPREF1078_RS03335 at 787.273 kb on + strand, within HMPREF1078_RS03335 at 787.273 kb on + strand, within HMPREF1078_RS03335 at 787.273 kb on + strand, within HMPREF1078_RS03335 at 787.273 kb on + strand, within HMPREF1078_RS03335 at 787.273 kb on + strand, within HMPREF1078_RS03335 at 787.274 kb on - strand, within HMPREF1078_RS03335 at 787.274 kb on - strand, within HMPREF1078_RS03335 at 787.304 kb on - strand, within HMPREF1078_RS03335 at 787.304 kb on - strand, within HMPREF1078_RS03335 at 787.392 kb on - strand, within HMPREF1078_RS03335 at 787.540 kb on - strand, within HMPREF1078_RS03335 at 787.540 kb on - strand, within HMPREF1078_RS03335 at 787.547 kb on + strand, within HMPREF1078_RS03335 at 787.548 kb on - strand, within HMPREF1078_RS03335 at 787.550 kb on - strand, within HMPREF1078_RS03335 at 787.550 kb on - strand, within HMPREF1078_RS03335 at 787.552 kb on + strand, within HMPREF1078_RS03335 at 787.578 kb on + strand, within HMPREF1078_RS03335 at 787.579 kb on - strand, within HMPREF1078_RS03335 at 787.616 kb on + strand, within HMPREF1078_RS03335 at 787.633 kb on + strand, within HMPREF1078_RS03335 at 787.633 kb on + strand, within HMPREF1078_RS03335 at 787.634 kb on - strand, within HMPREF1078_RS03335 at 787.775 kb on + strand at 787.776 kb on - strand at 787.796 kb on + strand at 787.800 kb on + strand at 787.800 kb on + strand at 787.801 kb on - strand at 787.803 kb on - strand at 787.832 kb on + strand at 787.840 kb on + strand at 787.993 kb on + strand at 787.996 kb on + strand at 787.996 kb on + strand at 787.996 kb on + strand at 787.997 kb on - strand at 787.999 kb on - strand at 788.008 kb on - strand at 788.034 kb on + strand at 788.034 kb on + strand at 788.135 kb on + strand, within HMPREF1078_RS03340 at 788.173 kb on - strand, within HMPREF1078_RS03340 at 788.317 kb on + strand, within HMPREF1078_RS03340 at 788.318 kb on - strand, within HMPREF1078_RS03340 at 788.318 kb on - strand, within HMPREF1078_RS03340 at 788.319 kb on + strand, within HMPREF1078_RS03340 at 788.320 kb on - strand, within HMPREF1078_RS03340 at 788.325 kb on + strand, within HMPREF1078_RS03340 at 788.330 kb on + strand, within HMPREF1078_RS03340 at 788.331 kb on - strand, within HMPREF1078_RS03340 at 788.331 kb on - strand, within HMPREF1078_RS03340 at 788.478 kb on - strand, within HMPREF1078_RS03340 at 788.478 kb on - strand, within HMPREF1078_RS03340 at 788.483 kb on - strand, within HMPREF1078_RS03340 at 788.522 kb on - strand, within HMPREF1078_RS03340 at 788.600 kb on + strand, within HMPREF1078_RS03340 at 788.600 kb on + strand, within HMPREF1078_RS03340 at 788.601 kb on - strand, within HMPREF1078_RS03340 at 788.629 kb on + strand, within HMPREF1078_RS03340 at 788.735 kb on + strand, within HMPREF1078_RS03340 at 788.761 kb on - strand, within HMPREF1078_RS03340 at 788.865 kb on - strand, within HMPREF1078_RS03340 at 788.882 kb on + strand, within HMPREF1078_RS03340 at 788.986 kb on - strand, within HMPREF1078_RS03340 at 789.082 kb on - strand, within HMPREF1078_RS03340 at 789.104 kb on + strand, within HMPREF1078_RS03340 at 789.204 kb on + strand, within HMPREF1078_RS03340 at 789.204 kb on + strand, within HMPREF1078_RS03340 at 789.205 kb on - strand, within HMPREF1078_RS03340 at 789.263 kb on + strand, within HMPREF1078_RS03340 at 789.267 kb on + strand, within HMPREF1078_RS03340 at 789.267 kb on + strand, within HMPREF1078_RS03340 at 789.267 kb on + strand, within HMPREF1078_RS03340 at 789.268 kb on - strand, within HMPREF1078_RS03340 at 789.268 kb on - strand, within HMPREF1078_RS03340 at 789.268 kb on - strand, within HMPREF1078_RS03340 at 789.268 kb on - strand, within HMPREF1078_RS03340 at 789.268 kb on - strand, within HMPREF1078_RS03340 at 789.268 kb on - strand, within HMPREF1078_RS03340 at 789.268 kb on - strand, within HMPREF1078_RS03340 at 789.268 kb on - strand, within HMPREF1078_RS03340 at 789.271 kb on + strand, within HMPREF1078_RS03340 at 789.271 kb on + strand, within HMPREF1078_RS03340 at 789.291 kb on - strand, within HMPREF1078_RS03340 at 789.291 kb on - strand, within HMPREF1078_RS03340 at 789.292 kb on + strand, within HMPREF1078_RS03340 at 789.292 kb on + strand, within HMPREF1078_RS03340 at 789.292 kb on + strand, within HMPREF1078_RS03340 at 789.317 kb on + strand, within HMPREF1078_RS03340 at 789.318 kb on - strand, within HMPREF1078_RS03340 at 789.492 kb on + strand, within HMPREF1078_RS03340 at 789.492 kb on + strand, within HMPREF1078_RS03340 at 789.493 kb on - strand, within HMPREF1078_RS03340 at 789.495 kb on + strand, within HMPREF1078_RS03340 at 789.495 kb on + strand, within HMPREF1078_RS03340 at 789.495 kb on + strand, within HMPREF1078_RS03340 at 789.511 kb on + strand, within HMPREF1078_RS03340 at 789.586 kb on - strand, within HMPREF1078_RS03340 at 789.604 kb on - strand, within HMPREF1078_RS03340 at 789.681 kb on + strand, within HMPREF1078_RS03340 at 789.759 kb on + strand, within HMPREF1078_RS03340 at 789.773 kb on - strand, within HMPREF1078_RS03340 at 789.939 kb on + strand, within HMPREF1078_RS03340 at 789.985 kb on - strand, within HMPREF1078_RS03340 at 790.035 kb on - strand, within HMPREF1078_RS03340 at 790.092 kb on + strand, within HMPREF1078_RS03340 at 790.167 kb on + strand, within HMPREF1078_RS03340 at 790.241 kb on + strand, within HMPREF1078_RS03340 at 790.278 kb on + strand, within HMPREF1078_RS03340 at 790.278 kb on + strand, within HMPREF1078_RS03340 at 790.332 kb on - strand, within HMPREF1078_RS03340 at 790.332 kb on - strand, within HMPREF1078_RS03340 at 790.368 kb on + strand, within HMPREF1078_RS03340 at 790.368 kb on + strand, within HMPREF1078_RS03340 at 790.413 kb on + strand at 790.506 kb on + strand at 790.507 kb on - strand at 790.507 kb on - strand at 790.624 kb on - strand at 790.624 kb on - strand at 790.661 kb on - strand at 790.661 kb on - strand at 790.665 kb on + strand at 790.665 kb on + strand at 790.665 kb on + strand at 790.665 kb on + strand at 790.666 kb on - strand at 790.666 kb on - strand at 790.701 kb on + strand at 790.702 kb on - strand at 790.705 kb on + strand, within HMPREF1078_RS03345 at 790.707 kb on + strand, within HMPREF1078_RS03345 at 790.707 kb on + strand, within HMPREF1078_RS03345 at 790.707 kb on + strand, within HMPREF1078_RS03345 at 790.707 kb on + strand, within HMPREF1078_RS03345 at 790.707 kb on + strand, within HMPREF1078_RS03345 at 790.708 kb on - strand, within HMPREF1078_RS03345 at 790.708 kb on - strand, within HMPREF1078_RS03345 at 790.708 kb on - strand, within HMPREF1078_RS03345 at 790.708 kb on - strand, within HMPREF1078_RS03345 at 790.758 kb on + strand, within HMPREF1078_RS03345 at 790.758 kb on + strand, within HMPREF1078_RS03345 at 790.759 kb on - strand, within HMPREF1078_RS03345 at 790.856 kb on + strand, within HMPREF1078_RS03345 at 790.856 kb on + strand, within HMPREF1078_RS03345 at 790.857 kb on - strand, within HMPREF1078_RS03345 at 790.857 kb on - strand, within HMPREF1078_RS03345 at 790.898 kb on + strand, within HMPREF1078_RS03345 at 790.898 kb on + strand, within HMPREF1078_RS03345 at 790.898 kb on + strand, within HMPREF1078_RS03345 at 790.937 kb on + strand, within HMPREF1078_RS03345 at 791.041 kb on + strand, within HMPREF1078_RS03350 at 791.041 kb on + strand, within HMPREF1078_RS03350 at 791.042 kb on - strand, within HMPREF1078_RS03350 at 791.088 kb on - strand, within HMPREF1078_RS03350 at 791.091 kb on + strand, within HMPREF1078_RS03350 at 791.239 kb on + strand, within HMPREF1078_RS03350 at 791.242 kb on + strand, within HMPREF1078_RS03350 at 791.242 kb on + strand, within HMPREF1078_RS03350 at 791.243 kb on - strand, within HMPREF1078_RS03350 at 791.327 kb on + strand at 791.343 kb on + strand at 791.394 kb on + strand at 791.395 kb on - strand at 791.396 kb on + strand at 791.396 kb on + strand at 791.396 kb on + strand at 791.396 kb on + strand at 791.397 kb on - strand at 791.397 kb on - strand at 791.397 kb on - strand at 791.398 kb on + strand at 791.398 kb on + strand at 791.398 kb on + strand at 791.398 kb on + strand at 791.468 kb on + strand, within HMPREF1078_RS03355 at 791.483 kb on - strand, within HMPREF1078_RS03355 at 791.567 kb on - strand, within HMPREF1078_RS03355 at 791.582 kb on - strand, within HMPREF1078_RS03355 at 791.612 kb on - strand, within HMPREF1078_RS03355 at 791.614 kb on + strand, within HMPREF1078_RS03355 at 791.660 kb on + strand, within HMPREF1078_RS03355
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C) remove 786,993 - HMPREF1078_RS03330 0.89 -0.2 787,031 + +1.1 787,032 - -1.0 787,033 + +0.3 787,033 + +0.3 787,044 + -0.7 787,051 + +0.7 787,055 + -0.0 787,055 + -1.4 787,056 - +2.7 787,057 + -2.1 787,081 + +0.6 787,081 + -0.9 787,082 - +1.4 787,083 + -1.3 787,084 - -0.9 787,128 + -1.1 787,216 + HMPREF1078_RS03335 0.17 -0.8 787,217 - HMPREF1078_RS03335 0.17 -0.1 787,217 - HMPREF1078_RS03335 0.17 -1.1 787,217 - HMPREF1078_RS03335 0.17 -1.5 787,249 + HMPREF1078_RS03335 0.21 +2.1 787,249 + HMPREF1078_RS03335 0.21 -0.7 787,249 + HMPREF1078_RS03335 0.21 -2.7 787,250 - HMPREF1078_RS03335 0.21 +0.0 787,255 - HMPREF1078_RS03335 0.22 +0.0 787,273 + HMPREF1078_RS03335 0.24 +2.1 787,273 + HMPREF1078_RS03335 0.24 -0.5 787,273 + HMPREF1078_RS03335 0.24 +0.0 787,273 + HMPREF1078_RS03335 0.24 -0.9 787,273 + HMPREF1078_RS03335 0.24 -0.7 787,274 - HMPREF1078_RS03335 0.25 +1.1 787,274 - HMPREF1078_RS03335 0.25 +0.9 787,304 - HMPREF1078_RS03335 0.29 -2.0 787,304 - HMPREF1078_RS03335 0.29 -0.1 787,392 - HMPREF1078_RS03335 0.40 +1.3 787,540 - HMPREF1078_RS03335 0.60 -0.9 787,540 - HMPREF1078_RS03335 0.60 -0.0 787,547 + HMPREF1078_RS03335 0.61 -1.6 787,548 - HMPREF1078_RS03335 0.62 +0.7 787,550 - HMPREF1078_RS03335 0.62 -0.3 787,550 - HMPREF1078_RS03335 0.62 -3.2 787,552 + HMPREF1078_RS03335 0.62 +2.1 787,578 + HMPREF1078_RS03335 0.66 -0.4 787,579 - HMPREF1078_RS03335 0.66 -1.4 787,616 + HMPREF1078_RS03335 0.71 -0.1 787,633 + HMPREF1078_RS03335 0.73 -1.1 787,633 + HMPREF1078_RS03335 0.73 -1.0 787,634 - HMPREF1078_RS03335 0.73 -0.7 787,775 + -0.7 787,776 - -1.2 787,796 + -1.7 787,800 + -0.0 787,800 + -1.6 787,801 - +0.2 787,803 - -1.7 787,832 + -0.3 787,840 + +0.3 787,993 + +1.2 787,996 + +0.1 787,996 + -0.6 787,996 + +0.2 787,997 - +1.0 787,999 - +0.3 788,008 - +1.8 788,034 + +0.3 788,034 + -2.6 788,135 + HMPREF1078_RS03340 0.11 -1.1 788,173 - HMPREF1078_RS03340 0.12 -1.6 788,317 + HMPREF1078_RS03340 0.17 -0.1 788,318 - HMPREF1078_RS03340 0.17 +0.0 788,318 - HMPREF1078_RS03340 0.17 +1.3 788,319 + HMPREF1078_RS03340 0.17 +0.7 788,320 - HMPREF1078_RS03340 0.17 -0.0 788,325 + HMPREF1078_RS03340 0.18 +0.5 788,330 + HMPREF1078_RS03340 0.18 -1.6 788,331 - HMPREF1078_RS03340 0.18 -0.4 788,331 - HMPREF1078_RS03340 0.18 +3.7 788,478 - HMPREF1078_RS03340 0.23 -1.7 788,478 - HMPREF1078_RS03340 0.23 +1.1 788,483 - HMPREF1078_RS03340 0.23 +1.3 788,522 - HMPREF1078_RS03340 0.25 +0.2 788,600 + HMPREF1078_RS03340 0.27 -0.3 788,600 + HMPREF1078_RS03340 0.27 -1.0 788,601 - HMPREF1078_RS03340 0.27 +0.8 788,629 + HMPREF1078_RS03340 0.28 -1.1 788,735 + HMPREF1078_RS03340 0.32 -0.8 788,761 - HMPREF1078_RS03340 0.33 +0.9 788,865 - HMPREF1078_RS03340 0.37 -0.1 788,882 + HMPREF1078_RS03340 0.37 -0.9 788,986 - HMPREF1078_RS03340 0.41 -0.2 789,082 - HMPREF1078_RS03340 0.44 +0.3 789,104 + HMPREF1078_RS03340 0.45 +1.6 789,204 + HMPREF1078_RS03340 0.49 -1.0 789,204 + HMPREF1078_RS03340 0.49 -1.7 789,205 - HMPREF1078_RS03340 0.49 -1.6 789,263 + HMPREF1078_RS03340 0.51 -1.7 789,267 + HMPREF1078_RS03340 0.51 -0.6 789,267 + HMPREF1078_RS03340 0.51 -0.4 789,267 + HMPREF1078_RS03340 0.51 -1.7 789,268 - HMPREF1078_RS03340 0.51 +0.5 789,268 - HMPREF1078_RS03340 0.51 -0.9 789,268 - HMPREF1078_RS03340 0.51 +0.4 789,268 - HMPREF1078_RS03340 0.51 -0.4 789,268 - HMPREF1078_RS03340 0.51 -0.3 789,268 - HMPREF1078_RS03340 0.51 +0.1 789,268 - HMPREF1078_RS03340 0.51 +1.0 789,268 - HMPREF1078_RS03340 0.51 -0.8 789,271 + HMPREF1078_RS03340 0.51 +0.5 789,271 + HMPREF1078_RS03340 0.51 -0.7 789,291 - HMPREF1078_RS03340 0.52 +0.9 789,291 - HMPREF1078_RS03340 0.52 -0.1 789,292 + HMPREF1078_RS03340 0.52 -1.7 789,292 + HMPREF1078_RS03340 0.52 +0.3 789,292 + HMPREF1078_RS03340 0.52 +1.0 789,317 + HMPREF1078_RS03340 0.53 -1.6 789,318 - HMPREF1078_RS03340 0.53 +1.3 789,492 + HMPREF1078_RS03340 0.59 +1.3 789,492 + HMPREF1078_RS03340 0.59 -1.6 789,493 - HMPREF1078_RS03340 0.59 +0.8 789,495 + HMPREF1078_RS03340 0.59 -0.6 789,495 + HMPREF1078_RS03340 0.59 -0.7 789,495 + HMPREF1078_RS03340 0.59 +0.4 789,511 + HMPREF1078_RS03340 0.59 -0.0 789,586 - HMPREF1078_RS03340 0.62 -0.8 789,604 - HMPREF1078_RS03340 0.63 -1.7 789,681 + HMPREF1078_RS03340 0.65 +2.9 789,759 + HMPREF1078_RS03340 0.68 -1.7 789,773 - HMPREF1078_RS03340 0.69 -0.4 789,939 + HMPREF1078_RS03340 0.75 -0.9 789,985 - HMPREF1078_RS03340 0.76 +0.6 790,035 - HMPREF1078_RS03340 0.78 -0.7 790,092 + HMPREF1078_RS03340 0.80 -0.9 790,167 + HMPREF1078_RS03340 0.83 -3.2 790,241 + HMPREF1078_RS03340 0.85 -0.3 790,278 + HMPREF1078_RS03340 0.86 -1.0 790,278 + HMPREF1078_RS03340 0.86 -0.0 790,332 - HMPREF1078_RS03340 0.88 +0.1 790,332 - HMPREF1078_RS03340 0.88 -2.4 790,368 + HMPREF1078_RS03340 0.90 -0.7 790,368 + HMPREF1078_RS03340 0.90 -1.2 790,413 + -1.9 790,506 + -2.2 790,507 - -2.3 790,507 - -1.4 790,624 - -1.0 790,624 - +3.1 790,661 - -0.8 790,661 - +1.0 790,665 + -1.5 790,665 + +0.8 790,665 + +1.3 790,665 + -1.7 790,666 - +0.7 790,666 - +1.7 790,701 + -1.7 790,702 - -0.6 790,705 + HMPREF1078_RS03345 0.10 +2.7 790,707 + HMPREF1078_RS03345 0.11 +0.0 790,707 + HMPREF1078_RS03345 0.11 +0.7 790,707 + HMPREF1078_RS03345 0.11 -2.6 790,707 + HMPREF1078_RS03345 0.11 -2.2 790,707 + HMPREF1078_RS03345 0.11 -2.1 790,708 - HMPREF1078_RS03345 0.11 -0.1 790,708 - HMPREF1078_RS03345 0.11 -1.3 790,708 - HMPREF1078_RS03345 0.11 -0.2 790,708 - HMPREF1078_RS03345 0.11 -0.1 790,758 + HMPREF1078_RS03345 0.28 -0.1 790,758 + HMPREF1078_RS03345 0.28 +0.1 790,759 - HMPREF1078_RS03345 0.29 +0.2 790,856 + HMPREF1078_RS03345 0.62 -2.1 790,856 + HMPREF1078_RS03345 0.62 +0.6 790,857 - HMPREF1078_RS03345 0.62 +0.9 790,857 - HMPREF1078_RS03345 0.62 +1.2 790,898 + HMPREF1078_RS03345 0.76 -0.7 790,898 + HMPREF1078_RS03345 0.76 -0.4 790,898 + HMPREF1078_RS03345 0.76 -0.5 790,937 + HMPREF1078_RS03345 0.90 -1.0 791,041 + HMPREF1078_RS03350 0.17 -0.6 791,041 + HMPREF1078_RS03350 0.17 +0.9 791,042 - HMPREF1078_RS03350 0.18 +0.1 791,088 - HMPREF1078_RS03350 0.31 -0.9 791,091 + HMPREF1078_RS03350 0.31 -1.7 791,239 + HMPREF1078_RS03350 0.73 -0.2 791,242 + HMPREF1078_RS03350 0.74 -0.9 791,242 + HMPREF1078_RS03350 0.74 -0.9 791,243 - HMPREF1078_RS03350 0.74 -0.4 791,327 + -0.4 791,343 + -1.9 791,394 + +1.3 791,395 - +0.7 791,396 + -2.7 791,396 + +0.4 791,396 + +0.1 791,396 + +1.3 791,397 - -1.8 791,397 - +0.6 791,397 - -0.5 791,398 + -0.0 791,398 + -0.8 791,398 + -0.7 791,398 + -1.5 791,468 + HMPREF1078_RS03355 0.15 +1.1 791,483 - HMPREF1078_RS03355 0.19 -2.6 791,567 - HMPREF1078_RS03355 0.38 +0.3 791,582 - HMPREF1078_RS03355 0.41 +0.7 791,612 - HMPREF1078_RS03355 0.48 +1.4 791,614 + HMPREF1078_RS03355 0.49 +1.1 791,660 + HMPREF1078_RS03355 0.59 +0.3
Or see this region's nucleotide sequence