Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS03215

Experiment: D-Maltose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS03205 and HMPREF1078_RS03210 overlap by 4 nucleotidesHMPREF1078_RS03210 and HMPREF1078_RS03215 overlap by 4 nucleotidesHMPREF1078_RS03215 and HMPREF1078_RS03220 are separated by 26 nucleotidesHMPREF1078_RS03220 and HMPREF1078_RS03225 are separated by 5 nucleotides HMPREF1078_RS03205: HMPREF1078_RS03205 - hypothetical protein, at 762,458 to 763,132 _RS03205 HMPREF1078_RS03210: HMPREF1078_RS03210 - hypothetical protein, at 763,129 to 763,674 _RS03210 HMPREF1078_RS03215: HMPREF1078_RS03215 - DNA topoisomerase I, at 763,671 to 764,216 _RS03215 HMPREF1078_RS03220: HMPREF1078_RS03220 - hypothetical protein, at 764,243 to 764,983 _RS03220 HMPREF1078_RS03225: HMPREF1078_RS03225 - toprim domain-containing protein, at 764,989 to 766,176 _RS03225 Position (kb) 763 764 765Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 762.709 kb on + strand, within HMPREF1078_RS03205at 762.710 kb on - strand, within HMPREF1078_RS03205at 762.712 kb on - strand, within HMPREF1078_RS03205at 762.717 kb on + strand, within HMPREF1078_RS03205at 762.778 kb on + strand, within HMPREF1078_RS03205at 762.784 kb on - strand, within HMPREF1078_RS03205at 762.784 kb on - strand, within HMPREF1078_RS03205at 762.792 kb on + strand, within HMPREF1078_RS03205at 762.793 kb on - strand, within HMPREF1078_RS03205at 762.793 kb on - strand, within HMPREF1078_RS03205at 762.793 kb on - strand, within HMPREF1078_RS03205at 762.835 kb on + strand, within HMPREF1078_RS03205at 762.880 kb on + strand, within HMPREF1078_RS03205at 762.891 kb on + strand, within HMPREF1078_RS03205at 762.901 kb on - strand, within HMPREF1078_RS03205at 762.926 kb on - strand, within HMPREF1078_RS03205at 762.932 kb on + strand, within HMPREF1078_RS03205at 762.933 kb on - strand, within HMPREF1078_RS03205at 762.993 kb on - strand, within HMPREF1078_RS03205at 762.993 kb on - strand, within HMPREF1078_RS03205at 762.995 kb on - strand, within HMPREF1078_RS03205at 762.995 kb on - strand, within HMPREF1078_RS03205at 762.995 kb on - strand, within HMPREF1078_RS03205at 763.014 kb on - strand, within HMPREF1078_RS03205at 763.037 kb on + strand, within HMPREF1078_RS03205at 763.132 kb on + strandat 763.133 kb on - strandat 763.133 kb on - strandat 763.236 kb on - strand, within HMPREF1078_RS03210at 763.236 kb on - strand, within HMPREF1078_RS03210at 763.241 kb on - strand, within HMPREF1078_RS03210at 763.247 kb on - strand, within HMPREF1078_RS03210at 763.398 kb on + strand, within HMPREF1078_RS03210at 763.419 kb on + strand, within HMPREF1078_RS03210at 763.481 kb on + strand, within HMPREF1078_RS03210at 763.481 kb on + strand, within HMPREF1078_RS03210at 763.482 kb on - strand, within HMPREF1078_RS03210at 763.587 kb on + strand, within HMPREF1078_RS03210at 763.649 kb on - strandat 763.654 kb on + strandat 763.675 kb on - strandat 763.744 kb on + strand, within HMPREF1078_RS03215at 763.766 kb on + strand, within HMPREF1078_RS03215at 763.766 kb on + strand, within HMPREF1078_RS03215at 763.767 kb on - strand, within HMPREF1078_RS03215at 763.767 kb on - strand, within HMPREF1078_RS03215at 763.821 kb on + strand, within HMPREF1078_RS03215at 763.822 kb on - strand, within HMPREF1078_RS03215at 763.822 kb on - strand, within HMPREF1078_RS03215at 763.822 kb on - strand, within HMPREF1078_RS03215at 763.823 kb on + strand, within HMPREF1078_RS03215at 763.824 kb on - strand, within HMPREF1078_RS03215at 763.824 kb on - strand, within HMPREF1078_RS03215at 763.824 kb on - strand, within HMPREF1078_RS03215at 763.833 kb on + strand, within HMPREF1078_RS03215at 763.868 kb on - strand, within HMPREF1078_RS03215at 763.903 kb on - strand, within HMPREF1078_RS03215at 763.903 kb on - strand, within HMPREF1078_RS03215at 763.946 kb on + strand, within HMPREF1078_RS03215at 764.105 kb on + strand, within HMPREF1078_RS03215at 764.105 kb on + strand, within HMPREF1078_RS03215at 764.106 kb on - strand, within HMPREF1078_RS03215at 764.194 kb on - strandat 764.196 kb on - strandat 764.230 kb on + strandat 764.288 kb on + strandat 764.289 kb on - strandat 764.289 kb on - strandat 764.369 kb on + strand, within HMPREF1078_RS03220at 764.402 kb on - strand, within HMPREF1078_RS03220at 764.424 kb on - strand, within HMPREF1078_RS03220at 764.435 kb on + strand, within HMPREF1078_RS03220at 764.436 kb on - strand, within HMPREF1078_RS03220at 764.436 kb on - strand, within HMPREF1078_RS03220at 764.436 kb on - strand, within HMPREF1078_RS03220at 764.436 kb on - strand, within HMPREF1078_RS03220at 764.439 kb on + strand, within HMPREF1078_RS03220at 764.440 kb on - strand, within HMPREF1078_RS03220at 764.440 kb on - strand, within HMPREF1078_RS03220at 764.468 kb on + strand, within HMPREF1078_RS03220at 764.469 kb on - strand, within HMPREF1078_RS03220at 764.506 kb on + strand, within HMPREF1078_RS03220at 764.507 kb on - strand, within HMPREF1078_RS03220at 764.507 kb on - strand, within HMPREF1078_RS03220at 764.511 kb on + strand, within HMPREF1078_RS03220at 764.663 kb on + strand, within HMPREF1078_RS03220at 764.769 kb on - strand, within HMPREF1078_RS03220at 764.769 kb on - strand, within HMPREF1078_RS03220at 764.769 kb on - strand, within HMPREF1078_RS03220at 764.769 kb on - strand, within HMPREF1078_RS03220at 764.845 kb on + strand, within HMPREF1078_RS03220at 764.846 kb on - strand, within HMPREF1078_RS03220at 764.997 kb on + strandat 765.006 kb on + strandat 765.007 kb on - strandat 765.028 kb on - strandat 765.133 kb on - strand, within HMPREF1078_RS03225

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose 10 mg/mL (C)
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762,709 + HMPREF1078_RS03205 0.37 +1.4
762,710 - HMPREF1078_RS03205 0.37 -0.8
762,712 - HMPREF1078_RS03205 0.38 +0.0
762,717 + HMPREF1078_RS03205 0.38 +0.0
762,778 + HMPREF1078_RS03205 0.47 +1.0
762,784 - HMPREF1078_RS03205 0.48 -0.4
762,784 - HMPREF1078_RS03205 0.48 -0.8
762,792 + HMPREF1078_RS03205 0.49 -1.3
762,793 - HMPREF1078_RS03205 0.50 -1.1
762,793 - HMPREF1078_RS03205 0.50 +0.3
762,793 - HMPREF1078_RS03205 0.50 -0.4
762,835 + HMPREF1078_RS03205 0.56 -1.1
762,880 + HMPREF1078_RS03205 0.63 +0.5
762,891 + HMPREF1078_RS03205 0.64 -0.1
762,901 - HMPREF1078_RS03205 0.66 -1.1
762,926 - HMPREF1078_RS03205 0.69 -0.4
762,932 + HMPREF1078_RS03205 0.70 -0.3
762,933 - HMPREF1078_RS03205 0.70 +0.5
762,993 - HMPREF1078_RS03205 0.79 -0.5
762,993 - HMPREF1078_RS03205 0.79 -2.4
762,995 - HMPREF1078_RS03205 0.80 -1.1
762,995 - HMPREF1078_RS03205 0.80 -2.2
762,995 - HMPREF1078_RS03205 0.80 -1.1
763,014 - HMPREF1078_RS03205 0.82 -1.7
763,037 + HMPREF1078_RS03205 0.86 -2.0
763,132 + +0.1
763,133 - -1.3
763,133 - -0.7
763,236 - HMPREF1078_RS03210 0.20 +0.4
763,236 - HMPREF1078_RS03210 0.20 +1.7
763,241 - HMPREF1078_RS03210 0.21 +1.1
763,247 - HMPREF1078_RS03210 0.22 +0.4
763,398 + HMPREF1078_RS03210 0.49 -0.5
763,419 + HMPREF1078_RS03210 0.53 +0.2
763,481 + HMPREF1078_RS03210 0.64 -0.6
763,481 + HMPREF1078_RS03210 0.64 +0.2
763,482 - HMPREF1078_RS03210 0.65 +0.4
763,587 + HMPREF1078_RS03210 0.84 -1.3
763,649 - -2.4
763,654 + +2.6
763,675 - -1.1
763,744 + HMPREF1078_RS03215 0.13 +1.4
763,766 + HMPREF1078_RS03215 0.17 -2.5
763,766 + HMPREF1078_RS03215 0.17 -0.8
763,767 - HMPREF1078_RS03215 0.18 -0.3
763,767 - HMPREF1078_RS03215 0.18 -2.5
763,821 + HMPREF1078_RS03215 0.27 -1.2
763,822 - HMPREF1078_RS03215 0.28 -1.7
763,822 - HMPREF1078_RS03215 0.28 -0.8
763,822 - HMPREF1078_RS03215 0.28 -0.3
763,823 + HMPREF1078_RS03215 0.28 -1.5
763,824 - HMPREF1078_RS03215 0.28 -1.3
763,824 - HMPREF1078_RS03215 0.28 -0.1
763,824 - HMPREF1078_RS03215 0.28 -1.0
763,833 + HMPREF1078_RS03215 0.30 +0.5
763,868 - HMPREF1078_RS03215 0.36 +0.2
763,903 - HMPREF1078_RS03215 0.42 +0.4
763,903 - HMPREF1078_RS03215 0.42 -1.2
763,946 + HMPREF1078_RS03215 0.50 +0.0
764,105 + HMPREF1078_RS03215 0.79 -1.5
764,105 + HMPREF1078_RS03215 0.79 -1.0
764,106 - HMPREF1078_RS03215 0.80 -1.0
764,194 - +0.0
764,196 - -0.4
764,230 + -1.3
764,288 + -2.2
764,289 - +0.7
764,289 - -0.2
764,369 + HMPREF1078_RS03220 0.17 -0.5
764,402 - HMPREF1078_RS03220 0.21 -0.5
764,424 - HMPREF1078_RS03220 0.24 +0.4
764,435 + HMPREF1078_RS03220 0.26 -0.5
764,436 - HMPREF1078_RS03220 0.26 -1.4
764,436 - HMPREF1078_RS03220 0.26 -1.4
764,436 - HMPREF1078_RS03220 0.26 -0.5
764,436 - HMPREF1078_RS03220 0.26 -2.8
764,439 + HMPREF1078_RS03220 0.26 -0.4
764,440 - HMPREF1078_RS03220 0.27 +0.4
764,440 - HMPREF1078_RS03220 0.27 -1.7
764,468 + HMPREF1078_RS03220 0.30 -1.4
764,469 - HMPREF1078_RS03220 0.30 -0.2
764,506 + HMPREF1078_RS03220 0.35 +0.6
764,507 - HMPREF1078_RS03220 0.36 +1.2
764,507 - HMPREF1078_RS03220 0.36 -0.6
764,511 + HMPREF1078_RS03220 0.36 -1.0
764,663 + HMPREF1078_RS03220 0.57 +0.3
764,769 - HMPREF1078_RS03220 0.71 -0.5
764,769 - HMPREF1078_RS03220 0.71 +1.1
764,769 - HMPREF1078_RS03220 0.71 -0.3
764,769 - HMPREF1078_RS03220 0.71 +0.0
764,845 + HMPREF1078_RS03220 0.81 +0.1
764,846 - HMPREF1078_RS03220 0.81 -1.0
764,997 + -2.1
765,006 + -2.8
765,007 - +0.4
765,028 - -0.1
765,133 - HMPREF1078_RS03225 0.12 -1.0

Or see this region's nucleotide sequence