Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16680

Experiment: Beta-Lactose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS16675 and HMPREF1078_RS16680 are separated by 85 nucleotidesHMPREF1078_RS16680 and HMPREF1078_RS16685 are separated by 40 nucleotidesHMPREF1078_RS16685 and HMPREF1078_RS16690 are separated by 12 nucleotides HMPREF1078_RS16675: HMPREF1078_RS16675 - ketol-acid reductoisomerase, at 47,938 to 48,981 _RS16675 HMPREF1078_RS16680: HMPREF1078_RS16680 - thioesterase, at 49,067 to 49,804 _RS16680 HMPREF1078_RS16685: HMPREF1078_RS16685 - acetolactate synthase small subunit, at 49,845 to 50,396 _RS16685 HMPREF1078_RS16690: HMPREF1078_RS16690 - biosynthetic-type acetolactate synthase large subunit, at 50,409 to 52,109 _RS16690 Position (kb) 49 50Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 48.112 kb on + strand, within HMPREF1078_RS16675at 48.113 kb on - strand, within HMPREF1078_RS16675at 48.113 kb on - strand, within HMPREF1078_RS16675at 48.188 kb on + strand, within HMPREF1078_RS16675at 48.189 kb on - strand, within HMPREF1078_RS16675at 48.189 kb on - strand, within HMPREF1078_RS16675at 48.189 kb on - strand, within HMPREF1078_RS16675at 48.189 kb on - strand, within HMPREF1078_RS16675at 48.317 kb on - strand, within HMPREF1078_RS16675at 48.317 kb on - strand, within HMPREF1078_RS16675at 48.317 kb on - strand, within HMPREF1078_RS16675at 48.368 kb on - strand, within HMPREF1078_RS16675at 48.402 kb on - strand, within HMPREF1078_RS16675at 48.402 kb on - strand, within HMPREF1078_RS16675at 48.477 kb on - strand, within HMPREF1078_RS16675at 48.576 kb on + strand, within HMPREF1078_RS16675at 48.580 kb on - strand, within HMPREF1078_RS16675at 48.586 kb on - strand, within HMPREF1078_RS16675at 48.704 kb on - strand, within HMPREF1078_RS16675at 48.708 kb on + strand, within HMPREF1078_RS16675at 48.808 kb on + strand, within HMPREF1078_RS16675at 48.876 kb on + strand, within HMPREF1078_RS16675at 48.902 kb on - strandat 48.988 kb on + strandat 48.994 kb on + strandat 48.994 kb on + strandat 49.000 kb on + strandat 49.008 kb on + strandat 49.096 kb on + strandat 49.111 kb on + strandat 49.111 kb on + strandat 49.156 kb on - strand, within HMPREF1078_RS16680at 49.194 kb on + strand, within HMPREF1078_RS16680at 49.216 kb on + strand, within HMPREF1078_RS16680at 49.266 kb on + strand, within HMPREF1078_RS16680at 49.268 kb on - strand, within HMPREF1078_RS16680at 49.268 kb on - strand, within HMPREF1078_RS16680at 49.269 kb on + strand, within HMPREF1078_RS16680at 49.276 kb on + strand, within HMPREF1078_RS16680at 49.277 kb on - strand, within HMPREF1078_RS16680at 49.277 kb on - strand, within HMPREF1078_RS16680at 49.277 kb on - strand, within HMPREF1078_RS16680at 49.311 kb on + strand, within HMPREF1078_RS16680at 49.324 kb on - strand, within HMPREF1078_RS16680at 49.324 kb on - strand, within HMPREF1078_RS16680at 49.401 kb on + strand, within HMPREF1078_RS16680at 49.401 kb on + strand, within HMPREF1078_RS16680at 49.401 kb on + strand, within HMPREF1078_RS16680at 49.402 kb on - strand, within HMPREF1078_RS16680at 49.468 kb on + strand, within HMPREF1078_RS16680at 49.468 kb on + strand, within HMPREF1078_RS16680at 49.492 kb on + strand, within HMPREF1078_RS16680at 49.561 kb on - strand, within HMPREF1078_RS16680at 49.570 kb on + strand, within HMPREF1078_RS16680at 49.571 kb on + strand, within HMPREF1078_RS16680at 49.571 kb on - strand, within HMPREF1078_RS16680at 49.571 kb on - strand, within HMPREF1078_RS16680at 49.571 kb on - strand, within HMPREF1078_RS16680at 49.634 kb on - strand, within HMPREF1078_RS16680at 49.648 kb on + strand, within HMPREF1078_RS16680at 49.649 kb on - strand, within HMPREF1078_RS16680at 49.651 kb on - strand, within HMPREF1078_RS16680at 49.697 kb on + strand, within HMPREF1078_RS16680at 49.697 kb on + strand, within HMPREF1078_RS16680at 49.697 kb on + strand, within HMPREF1078_RS16680at 49.698 kb on - strand, within HMPREF1078_RS16680at 49.705 kb on - strand, within HMPREF1078_RS16680at 49.728 kb on - strand, within HMPREF1078_RS16680at 49.841 kb on + strandat 49.865 kb on + strandat 49.866 kb on - strandat 49.866 kb on - strandat 49.887 kb on - strandat 50.000 kb on - strand, within HMPREF1078_RS16685at 50.058 kb on - strand, within HMPREF1078_RS16685at 50.058 kb on - strand, within HMPREF1078_RS16685at 50.060 kb on - strand, within HMPREF1078_RS16685at 50.118 kb on - strand, within HMPREF1078_RS16685at 50.119 kb on + strand, within HMPREF1078_RS16685at 50.119 kb on + strand, within HMPREF1078_RS16685at 50.156 kb on + strand, within HMPREF1078_RS16685at 50.161 kb on + strand, within HMPREF1078_RS16685at 50.162 kb on - strand, within HMPREF1078_RS16685at 50.165 kb on - strand, within HMPREF1078_RS16685at 50.178 kb on - strand, within HMPREF1078_RS16685at 50.253 kb on - strand, within HMPREF1078_RS16685at 50.256 kb on + strand, within HMPREF1078_RS16685at 50.257 kb on - strand, within HMPREF1078_RS16685at 50.257 kb on - strand, within HMPREF1078_RS16685at 50.257 kb on - strand, within HMPREF1078_RS16685at 50.258 kb on + strand, within HMPREF1078_RS16685at 50.346 kb on + strandat 50.348 kb on - strandat 50.351 kb on + strandat 50.376 kb on - strandat 50.376 kb on - strandat 50.376 kb on - strandat 50.396 kb on + strandat 50.396 kb on + strandat 50.414 kb on + strandat 50.415 kb on - strandat 50.424 kb on + strandat 50.424 kb on + strandat 50.425 kb on - strandat 50.436 kb on + strandat 50.466 kb on + strandat 50.467 kb on - strandat 50.467 kb on - strandat 50.467 kb on - strandat 50.471 kb on + strandat 50.471 kb on + strandat 50.472 kb on - strandat 50.627 kb on + strand, within HMPREF1078_RS16690at 50.628 kb on - strand, within HMPREF1078_RS16690at 50.628 kb on - strand, within HMPREF1078_RS16690at 50.628 kb on - strand, within HMPREF1078_RS16690at 50.687 kb on + strand, within HMPREF1078_RS16690at 50.688 kb on - strand, within HMPREF1078_RS16690at 50.793 kb on - strand, within HMPREF1078_RS16690

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose 10 mg/mL (C)
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48,112 + HMPREF1078_RS16675 0.17 -3.5
48,113 - HMPREF1078_RS16675 0.17 -3.3
48,113 - HMPREF1078_RS16675 0.17 -4.7
48,188 + HMPREF1078_RS16675 0.24 -3.8
48,189 - HMPREF1078_RS16675 0.24 -4.8
48,189 - HMPREF1078_RS16675 0.24 -3.6
48,189 - HMPREF1078_RS16675 0.24 -4.0
48,189 - HMPREF1078_RS16675 0.24 -4.4
48,317 - HMPREF1078_RS16675 0.36 -2.4
48,317 - HMPREF1078_RS16675 0.36 -5.2
48,317 - HMPREF1078_RS16675 0.36 -3.2
48,368 - HMPREF1078_RS16675 0.41 -2.1
48,402 - HMPREF1078_RS16675 0.44 -3.3
48,402 - HMPREF1078_RS16675 0.44 -3.4
48,477 - HMPREF1078_RS16675 0.52 -4.7
48,576 + HMPREF1078_RS16675 0.61 -2.3
48,580 - HMPREF1078_RS16675 0.61 -4.0
48,586 - HMPREF1078_RS16675 0.62 -4.3
48,704 - HMPREF1078_RS16675 0.73 -3.3
48,708 + HMPREF1078_RS16675 0.74 +0.5
48,808 + HMPREF1078_RS16675 0.83 -2.7
48,876 + HMPREF1078_RS16675 0.90 -4.6
48,902 - -4.3
48,988 + -4.1
48,994 + -1.2
48,994 + -2.6
49,000 + -1.2
49,008 + -3.1
49,096 + -5.1
49,111 + -2.3
49,111 + -3.0
49,156 - HMPREF1078_RS16680 0.12 +0.3
49,194 + HMPREF1078_RS16680 0.17 -2.9
49,216 + HMPREF1078_RS16680 0.20 -1.7
49,266 + HMPREF1078_RS16680 0.27 -1.5
49,268 - HMPREF1078_RS16680 0.27 +1.4
49,268 - HMPREF1078_RS16680 0.27 -0.4
49,269 + HMPREF1078_RS16680 0.27 -2.3
49,276 + HMPREF1078_RS16680 0.28 -5.1
49,277 - HMPREF1078_RS16680 0.28 -0.9
49,277 - HMPREF1078_RS16680 0.28 +0.9
49,277 - HMPREF1078_RS16680 0.28 -0.4
49,311 + HMPREF1078_RS16680 0.33 -3.2
49,324 - HMPREF1078_RS16680 0.35 +1.2
49,324 - HMPREF1078_RS16680 0.35 +0.4
49,401 + HMPREF1078_RS16680 0.45 -5.3
49,401 + HMPREF1078_RS16680 0.45 -3.8
49,401 + HMPREF1078_RS16680 0.45 -2.5
49,402 - HMPREF1078_RS16680 0.45 +1.0
49,468 + HMPREF1078_RS16680 0.54 -1.1
49,468 + HMPREF1078_RS16680 0.54 -3.6
49,492 + HMPREF1078_RS16680 0.58 -5.0
49,561 - HMPREF1078_RS16680 0.67 +0.2
49,570 + HMPREF1078_RS16680 0.68 -1.5
49,571 + HMPREF1078_RS16680 0.68 -3.0
49,571 - HMPREF1078_RS16680 0.68 -0.8
49,571 - HMPREF1078_RS16680 0.68 -0.8
49,571 - HMPREF1078_RS16680 0.68 -0.1
49,634 - HMPREF1078_RS16680 0.77 -0.1
49,648 + HMPREF1078_RS16680 0.79 -3.6
49,649 - HMPREF1078_RS16680 0.79 -1.6
49,651 - HMPREF1078_RS16680 0.79 -1.0
49,697 + HMPREF1078_RS16680 0.85 -1.8
49,697 + HMPREF1078_RS16680 0.85 -2.3
49,697 + HMPREF1078_RS16680 0.85 -3.3
49,698 - HMPREF1078_RS16680 0.86 -0.7
49,705 - HMPREF1078_RS16680 0.86 -1.9
49,728 - HMPREF1078_RS16680 0.90 -0.3
49,841 + -3.5
49,865 + -3.6
49,866 - -1.6
49,866 - +0.2
49,887 - -1.7
50,000 - HMPREF1078_RS16685 0.28 -3.8
50,058 - HMPREF1078_RS16685 0.39 -2.2
50,058 - HMPREF1078_RS16685 0.39 -1.4
50,060 - HMPREF1078_RS16685 0.39 -0.3
50,118 - HMPREF1078_RS16685 0.49 -1.3
50,119 + HMPREF1078_RS16685 0.50 -3.2
50,119 + HMPREF1078_RS16685 0.50 -0.3
50,156 + HMPREF1078_RS16685 0.56 -3.0
50,161 + HMPREF1078_RS16685 0.57 -2.1
50,162 - HMPREF1078_RS16685 0.57 -0.3
50,165 - HMPREF1078_RS16685 0.58 -2.7
50,178 - HMPREF1078_RS16685 0.60 -3.8
50,253 - HMPREF1078_RS16685 0.74 -2.6
50,256 + HMPREF1078_RS16685 0.74 -1.2
50,257 - HMPREF1078_RS16685 0.75 -4.3
50,257 - HMPREF1078_RS16685 0.75 -3.5
50,257 - HMPREF1078_RS16685 0.75 -0.2
50,258 + HMPREF1078_RS16685 0.75 -0.3
50,346 + -1.3
50,348 - -2.8
50,351 + -4.0
50,376 - -3.2
50,376 - -4.5
50,376 - -3.0
50,396 + -1.6
50,396 + -2.8
50,414 + -1.6
50,415 - -0.6
50,424 + -3.2
50,424 + -2.8
50,425 - -0.4
50,436 + -2.9
50,466 + -3.4
50,467 - -3.9
50,467 - -3.3
50,467 - -3.8
50,471 + -4.1
50,471 + -2.7
50,472 - -1.8
50,627 + HMPREF1078_RS16690 0.13 -2.3
50,628 - HMPREF1078_RS16690 0.13 -5.1
50,628 - HMPREF1078_RS16690 0.13 -2.9
50,628 - HMPREF1078_RS16690 0.13 -3.3
50,687 + HMPREF1078_RS16690 0.16 -3.9
50,688 - HMPREF1078_RS16690 0.16 -0.8
50,793 - HMPREF1078_RS16690 0.23 -3.1

Or see this region's nucleotide sequence