Experiment: Beta-Lactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14670 and HMPREF1078_RS14675 are separated by 10 nucleotides HMPREF1078_RS14675 and HMPREF1078_RS14680 are separated by 99 nucleotides HMPREF1078_RS14680 and HMPREF1078_RS14685 are separated by 115 nucleotides HMPREF1078_RS14685 and HMPREF1078_RS14690 are separated by 83 nucleotides
HMPREF1078_RS14670: HMPREF1078_RS14670 - DUF4270 domain-containing protein, at 430,538 to 431,914
_RS14670
HMPREF1078_RS14675: HMPREF1078_RS14675 - glycogen/starch synthase, at 431,925 to 432,743
_RS14675
HMPREF1078_RS14680: HMPREF1078_RS14680 - pantoate--beta-alanine ligase, at 432,843 to 433,682
_RS14680
HMPREF1078_RS14685: HMPREF1078_RS14685 - aspartate 1-decarboxylase, at 433,798 to 434,169
_RS14685
HMPREF1078_RS14690: HMPREF1078_RS14690 - MATE family efflux transporter, at 434,253 to 435,575
_RS14690
Position (kb) 432
433
434 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 431.854 kb on + strand at 431.855 kb on - strand at 431.926 kb on + strand at 431.940 kb on + strand at 432.762 kb on - strand at 432.806 kb on - strand at 432.854 kb on - strand at 432.861 kb on - strand at 432.880 kb on - strand at 432.902 kb on + strand at 432.998 kb on - strand, within HMPREF1078_RS14680 at 433.029 kb on - strand, within HMPREF1078_RS14680 at 433.320 kb on - strand, within HMPREF1078_RS14680 at 433.403 kb on + strand, within HMPREF1078_RS14680 at 433.448 kb on - strand, within HMPREF1078_RS14680 at 433.454 kb on + strand, within HMPREF1078_RS14680 at 433.454 kb on + strand, within HMPREF1078_RS14680 at 433.455 kb on - strand, within HMPREF1078_RS14680 at 433.528 kb on + strand, within HMPREF1078_RS14680 at 433.544 kb on + strand, within HMPREF1078_RS14680 at 433.544 kb on + strand, within HMPREF1078_RS14680 at 433.557 kb on + strand, within HMPREF1078_RS14680 at 433.558 kb on - strand, within HMPREF1078_RS14680 at 433.560 kb on + strand, within HMPREF1078_RS14680 at 433.570 kb on + strand, within HMPREF1078_RS14680 at 433.571 kb on - strand, within HMPREF1078_RS14680 at 433.580 kb on + strand, within HMPREF1078_RS14680 at 433.632 kb on - strand at 433.634 kb on + strand at 433.634 kb on + strand at 433.640 kb on - strand at 433.641 kb on + strand at 433.664 kb on - strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.668 kb on - strand at 433.671 kb on - strand at 433.673 kb on + strand at 433.673 kb on + strand at 433.673 kb on + strand at 433.677 kb on + strand at 433.678 kb on - strand at 433.680 kb on + strand at 433.681 kb on - strand at 433.684 kb on + strand at 433.686 kb on + strand at 433.687 kb on - strand at 433.687 kb on - strand at 433.692 kb on + strand at 433.699 kb on + strand at 433.724 kb on + strand at 433.730 kb on + strand at 433.730 kb on + strand at 433.738 kb on - strand at 433.740 kb on - strand at 433.756 kb on + strand at 433.756 kb on + strand at 433.757 kb on - strand at 433.761 kb on - strand at 433.764 kb on + strand at 433.764 kb on + strand at 433.772 kb on - strand at 433.785 kb on + strand at 433.797 kb on + strand at 433.804 kb on - strand at 433.805 kb on + strand at 433.805 kb on + strand at 433.806 kb on - strand at 433.811 kb on + strand at 433.811 kb on + strand at 433.861 kb on + strand, within HMPREF1078_RS14685 at 433.861 kb on + strand, within HMPREF1078_RS14685 at 433.861 kb on + strand, within HMPREF1078_RS14685 at 433.861 kb on + strand, within HMPREF1078_RS14685 at 433.862 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.865 kb on + strand, within HMPREF1078_RS14685 at 433.865 kb on + strand, within HMPREF1078_RS14685 at 433.865 kb on + strand, within HMPREF1078_RS14685 at 433.866 kb on - strand, within HMPREF1078_RS14685 at 433.872 kb on + strand, within HMPREF1078_RS14685 at 433.872 kb on + strand, within HMPREF1078_RS14685 at 433.873 kb on - strand, within HMPREF1078_RS14685 at 433.933 kb on - strand, within HMPREF1078_RS14685 at 433.933 kb on - strand, within HMPREF1078_RS14685 at 433.944 kb on + strand, within HMPREF1078_RS14685 at 433.944 kb on + strand, within HMPREF1078_RS14685 at 433.944 kb on + strand, within HMPREF1078_RS14685 at 433.970 kb on - strand, within HMPREF1078_RS14685 at 433.972 kb on - strand, within HMPREF1078_RS14685 at 434.055 kb on + strand, within HMPREF1078_RS14685 at 434.056 kb on - strand, within HMPREF1078_RS14685 at 434.058 kb on + strand, within HMPREF1078_RS14685 at 434.058 kb on + strand, within HMPREF1078_RS14685 at 434.058 kb on + strand, within HMPREF1078_RS14685 at 434.058 kb on + strand, within HMPREF1078_RS14685 at 434.059 kb on - strand, within HMPREF1078_RS14685 at 434.059 kb on - strand, within HMPREF1078_RS14685 at 434.100 kb on + strand, within HMPREF1078_RS14685 at 434.101 kb on - strand, within HMPREF1078_RS14685 at 434.101 kb on - strand, within HMPREF1078_RS14685 at 434.101 kb on - strand, within HMPREF1078_RS14685 at 434.137 kb on - strand at 434.176 kb on + strand at 434.181 kb on + strand at 434.181 kb on + strand at 434.181 kb on + strand at 434.182 kb on - strand at 434.182 kb on - strand at 434.182 kb on - strand at 434.182 kb on - strand at 434.182 kb on - strand at 434.183 kb on + strand at 434.183 kb on + strand at 434.183 kb on + strand at 434.183 kb on + strand at 434.184 kb on - strand at 434.184 kb on - strand at 434.247 kb on + strand at 434.250 kb on + strand at 434.250 kb on + strand at 434.250 kb on + strand at 434.251 kb on - strand at 434.252 kb on + strand at 434.252 kb on + strand at 434.253 kb on - strand at 434.253 kb on - strand at 434.253 kb on - strand at 434.253 kb on - strand at 434.256 kb on + strand at 434.283 kb on - strand at 434.325 kb on - strand at 434.371 kb on + strand at 434.396 kb on - strand, within HMPREF1078_RS14690 at 434.396 kb on - strand, within HMPREF1078_RS14690 at 434.397 kb on + strand, within HMPREF1078_RS14690 at 434.397 kb on + strand, within HMPREF1078_RS14690 at 434.397 kb on + strand, within HMPREF1078_RS14690 at 434.401 kb on - strand, within HMPREF1078_RS14690 at 434.402 kb on + strand, within HMPREF1078_RS14690 at 434.402 kb on + strand, within HMPREF1078_RS14690 at 434.402 kb on + strand, within HMPREF1078_RS14690 at 434.402 kb on + strand, within HMPREF1078_RS14690 at 434.403 kb on - strand, within HMPREF1078_RS14690 at 434.403 kb on - strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.405 kb on - strand, within HMPREF1078_RS14690 at 434.405 kb on - strand, within HMPREF1078_RS14690 at 434.405 kb on - strand, within HMPREF1078_RS14690 at 434.405 kb on - strand, within HMPREF1078_RS14690 at 434.405 kb on - strand, within HMPREF1078_RS14690 at 434.436 kb on - strand, within HMPREF1078_RS14690 at 434.466 kb on - strand, within HMPREF1078_RS14690 at 434.482 kb on - strand, within HMPREF1078_RS14690 at 434.506 kb on + strand, within HMPREF1078_RS14690 at 434.507 kb on - strand, within HMPREF1078_RS14690 at 434.549 kb on + strand, within HMPREF1078_RS14690 at 434.577 kb on - strand, within HMPREF1078_RS14690
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mg/mL (C) remove 431,854 + -0.8 431,855 - -0.8 431,926 + -0.4 431,940 + -0.6 432,762 - +0.8 432,806 - -0.4 432,854 - -0.2 432,861 - -0.8 432,880 - +0.6 432,902 + -0.2 432,998 - HMPREF1078_RS14680 0.18 +0.6 433,029 - HMPREF1078_RS14680 0.22 -2.6 433,320 - HMPREF1078_RS14680 0.57 -0.2 433,403 + HMPREF1078_RS14680 0.67 -0.2 433,448 - HMPREF1078_RS14680 0.72 +0.1 433,454 + HMPREF1078_RS14680 0.73 -1.1 433,454 + HMPREF1078_RS14680 0.73 +0.1 433,455 - HMPREF1078_RS14680 0.73 +0.1 433,528 + HMPREF1078_RS14680 0.82 -0.4 433,544 + HMPREF1078_RS14680 0.83 +0.1 433,544 + HMPREF1078_RS14680 0.83 -0.2 433,557 + HMPREF1078_RS14680 0.85 +0.1 433,558 - HMPREF1078_RS14680 0.85 -0.4 433,560 + HMPREF1078_RS14680 0.85 -0.2 433,570 + HMPREF1078_RS14680 0.87 -0.4 433,571 - HMPREF1078_RS14680 0.87 -0.2 433,580 + HMPREF1078_RS14680 0.88 +0.4 433,632 - -1.2 433,634 + +0.4 433,634 + -1.1 433,640 - -1.3 433,641 + -0.4 433,664 - -0.9 433,667 + +2.0 433,667 + +0.4 433,667 + -1.9 433,667 + +0.4 433,667 + -0.8 433,667 + -1.3 433,667 + +0.4 433,667 + +0.6 433,668 - +0.4 433,671 - -0.4 433,673 + -0.9 433,673 + -1.6 433,673 + -0.5 433,677 + -1.9 433,678 - -1.7 433,680 + -0.7 433,681 - -1.0 433,684 + +0.1 433,686 + -0.8 433,687 - +0.1 433,687 - -2.4 433,692 + -2.6 433,699 + -0.7 433,724 + +1.8 433,730 + -1.5 433,730 + +0.4 433,738 - -0.2 433,740 - -2.3 433,756 + -2.2 433,756 + -1.1 433,757 - +0.4 433,761 - -2.6 433,764 + -0.0 433,764 + -0.4 433,772 - -1.4 433,785 + -3.5 433,797 + -2.2 433,804 - -1.7 433,805 + -3.0 433,805 + -2.3 433,806 - -2.9 433,811 + -2.8 433,811 + -1.5 433,861 + HMPREF1078_RS14685 0.17 -2.9 433,861 + HMPREF1078_RS14685 0.17 -1.7 433,861 + HMPREF1078_RS14685 0.17 -4.4 433,861 + HMPREF1078_RS14685 0.17 -3.9 433,862 - HMPREF1078_RS14685 0.17 -2.1 433,864 - HMPREF1078_RS14685 0.18 -2.4 433,864 - HMPREF1078_RS14685 0.18 -0.9 433,864 - HMPREF1078_RS14685 0.18 -1.7 433,864 - HMPREF1078_RS14685 0.18 -3.2 433,864 - HMPREF1078_RS14685 0.18 -3.0 433,865 + HMPREF1078_RS14685 0.18 -3.6 433,865 + HMPREF1078_RS14685 0.18 -2.9 433,865 + HMPREF1078_RS14685 0.18 -1.0 433,866 - HMPREF1078_RS14685 0.18 -0.8 433,872 + HMPREF1078_RS14685 0.20 -4.1 433,872 + HMPREF1078_RS14685 0.20 -0.8 433,873 - HMPREF1078_RS14685 0.20 -1.2 433,933 - HMPREF1078_RS14685 0.36 -2.8 433,933 - HMPREF1078_RS14685 0.36 -1.1 433,944 + HMPREF1078_RS14685 0.39 -2.2 433,944 + HMPREF1078_RS14685 0.39 -1.4 433,944 + HMPREF1078_RS14685 0.39 -1.8 433,970 - HMPREF1078_RS14685 0.46 -0.9 433,972 - HMPREF1078_RS14685 0.47 -1.6 434,055 + HMPREF1078_RS14685 0.69 -2.4 434,056 - HMPREF1078_RS14685 0.69 -2.8 434,058 + HMPREF1078_RS14685 0.70 -0.4 434,058 + HMPREF1078_RS14685 0.70 -0.2 434,058 + HMPREF1078_RS14685 0.70 -2.7 434,058 + HMPREF1078_RS14685 0.70 -1.6 434,059 - HMPREF1078_RS14685 0.70 -2.5 434,059 - HMPREF1078_RS14685 0.70 -1.3 434,100 + HMPREF1078_RS14685 0.81 -2.2 434,101 - HMPREF1078_RS14685 0.81 -3.6 434,101 - HMPREF1078_RS14685 0.81 -1.8 434,101 - HMPREF1078_RS14685 0.81 -3.4 434,137 - -2.2 434,176 + +0.1 434,181 + -0.4 434,181 + -0.4 434,181 + +0.4 434,182 - -0.9 434,182 - -0.5 434,182 - -1.9 434,182 - -1.5 434,182 - -0.2 434,183 + -0.6 434,183 + +0.2 434,183 + +0.0 434,183 + +0.9 434,184 - -0.3 434,184 - -0.0 434,247 + -0.3 434,250 + -0.2 434,250 + +1.4 434,250 + +0.3 434,251 - -0.4 434,252 + +1.0 434,252 + -0.3 434,253 - -0.6 434,253 - -0.5 434,253 - -0.9 434,253 - +0.2 434,256 + -0.4 434,283 - -0.1 434,325 - +0.5 434,371 + -0.7 434,396 - HMPREF1078_RS14690 0.11 +0.1 434,396 - HMPREF1078_RS14690 0.11 +0.5 434,397 + HMPREF1078_RS14690 0.11 +0.9 434,397 + HMPREF1078_RS14690 0.11 +0.4 434,397 + HMPREF1078_RS14690 0.11 -0.2 434,401 - HMPREF1078_RS14690 0.11 -0.9 434,402 + HMPREF1078_RS14690 0.11 -0.9 434,402 + HMPREF1078_RS14690 0.11 -0.9 434,402 + HMPREF1078_RS14690 0.11 -1.4 434,402 + HMPREF1078_RS14690 0.11 -2.3 434,403 - HMPREF1078_RS14690 0.11 +0.6 434,403 - HMPREF1078_RS14690 0.11 +2.4 434,404 + HMPREF1078_RS14690 0.11 -0.1 434,404 + HMPREF1078_RS14690 0.11 -0.8 434,404 + HMPREF1078_RS14690 0.11 -0.5 434,404 + HMPREF1078_RS14690 0.11 -0.1 434,404 + HMPREF1078_RS14690 0.11 +0.9 434,405 - HMPREF1078_RS14690 0.11 +2.0 434,405 - HMPREF1078_RS14690 0.11 +0.2 434,405 - HMPREF1078_RS14690 0.11 +0.1 434,405 - HMPREF1078_RS14690 0.11 -1.1 434,405 - HMPREF1078_RS14690 0.11 +1.1 434,436 - HMPREF1078_RS14690 0.14 -0.7 434,466 - HMPREF1078_RS14690 0.16 +0.0 434,482 - HMPREF1078_RS14690 0.17 -1.1 434,506 + HMPREF1078_RS14690 0.19 -0.4 434,507 - HMPREF1078_RS14690 0.19 +0.7 434,549 + HMPREF1078_RS14690 0.22 -0.0 434,577 - HMPREF1078_RS14690 0.24 +0.1
Or see this region's nucleotide sequence