Experiment: Beta-Lactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00675 and HMPREF1078_RS00680 are separated by 120 nucleotides HMPREF1078_RS00680 and HMPREF1078_RS00685 overlap by 10 nucleotides HMPREF1078_RS00685 and HMPREF1078_RS00690 are separated by 80 nucleotides HMPREF1078_RS00690 and HMPREF1078_RS00695 are separated by 36 nucleotides
HMPREF1078_RS00675: HMPREF1078_RS00675 - SGNH/GDSL hydrolase family protein, at 157,386 to 159,137
_RS00675
HMPREF1078_RS00680: HMPREF1078_RS00680 - glycoside hydrolase family 97 protein, at 159,258 to 161,246
_RS00680
HMPREF1078_RS00685: HMPREF1078_RS00685 - MBL fold metallo-hydrolase, at 161,237 to 162,043
_RS00685
HMPREF1078_RS00690: HMPREF1078_RS00690 - tRNA-Cys, at 162,124 to 162,195
_RS00690
HMPREF1078_RS00695: HMPREF1078_RS00695 - tRNA-Cys, at 162,232 to 162,303
_RS00695
Position (kb) 159
160
161
162 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 158.277 kb on - strand, within HMPREF1078_RS00675 at 158.277 kb on - strand, within HMPREF1078_RS00675 at 158.277 kb on - strand, within HMPREF1078_RS00675 at 158.282 kb on + strand, within HMPREF1078_RS00675 at 158.409 kb on + strand, within HMPREF1078_RS00675 at 158.409 kb on + strand, within HMPREF1078_RS00675 at 158.413 kb on + strand, within HMPREF1078_RS00675 at 158.413 kb on + strand, within HMPREF1078_RS00675 at 158.672 kb on - strand, within HMPREF1078_RS00675 at 158.674 kb on - strand, within HMPREF1078_RS00675 at 158.733 kb on - strand, within HMPREF1078_RS00675 at 158.733 kb on - strand, within HMPREF1078_RS00675 at 158.736 kb on - strand, within HMPREF1078_RS00675 at 158.737 kb on + strand, within HMPREF1078_RS00675 at 158.737 kb on + strand, within HMPREF1078_RS00675 at 158.737 kb on + strand, within HMPREF1078_RS00675 at 158.737 kb on + strand, within HMPREF1078_RS00675 at 158.738 kb on - strand, within HMPREF1078_RS00675 at 158.738 kb on - strand, within HMPREF1078_RS00675 at 158.741 kb on + strand, within HMPREF1078_RS00675 at 158.741 kb on + strand, within HMPREF1078_RS00675 at 158.741 kb on + strand, within HMPREF1078_RS00675 at 158.741 kb on + strand, within HMPREF1078_RS00675 at 158.742 kb on - strand, within HMPREF1078_RS00675 at 158.744 kb on - strand, within HMPREF1078_RS00675 at 158.804 kb on + strand, within HMPREF1078_RS00675 at 158.805 kb on - strand, within HMPREF1078_RS00675 at 158.846 kb on + strand, within HMPREF1078_RS00675 at 158.846 kb on + strand, within HMPREF1078_RS00675 at 158.846 kb on + strand, within HMPREF1078_RS00675 at 158.847 kb on - strand, within HMPREF1078_RS00675 at 158.847 kb on - strand, within HMPREF1078_RS00675 at 158.847 kb on - strand, within HMPREF1078_RS00675 at 158.859 kb on - strand, within HMPREF1078_RS00675 at 158.903 kb on + strand, within HMPREF1078_RS00675 at 158.999 kb on - strand at 159.118 kb on - strand at 159.142 kb on - strand at 159.142 kb on - strand at 159.144 kb on + strand at 159.144 kb on + strand at 159.144 kb on + strand at 159.153 kb on - strand at 159.161 kb on + strand at 159.162 kb on - strand at 159.164 kb on + strand at 159.170 kb on - strand at 159.174 kb on + strand at 159.175 kb on - strand at 159.186 kb on + strand at 159.187 kb on - strand at 159.217 kb on - strand at 159.226 kb on + strand at 159.276 kb on - strand at 159.276 kb on - strand at 159.395 kb on + strand at 159.463 kb on + strand, within HMPREF1078_RS00680 at 159.531 kb on + strand, within HMPREF1078_RS00680 at 159.554 kb on + strand, within HMPREF1078_RS00680 at 159.554 kb on + strand, within HMPREF1078_RS00680 at 159.554 kb on + strand, within HMPREF1078_RS00680 at 159.555 kb on - strand, within HMPREF1078_RS00680 at 159.558 kb on + strand, within HMPREF1078_RS00680 at 159.558 kb on + strand, within HMPREF1078_RS00680 at 159.558 kb on + strand, within HMPREF1078_RS00680 at 159.559 kb on - strand, within HMPREF1078_RS00680 at 159.592 kb on - strand, within HMPREF1078_RS00680 at 159.608 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.612 kb on + strand, within HMPREF1078_RS00680 at 159.613 kb on - strand, within HMPREF1078_RS00680 at 159.613 kb on - strand, within HMPREF1078_RS00680 at 159.613 kb on - strand, within HMPREF1078_RS00680 at 159.613 kb on - strand, within HMPREF1078_RS00680 at 159.660 kb on - strand, within HMPREF1078_RS00680 at 159.723 kb on + strand, within HMPREF1078_RS00680 at 159.743 kb on + strand, within HMPREF1078_RS00680 at 159.783 kb on + strand, within HMPREF1078_RS00680 at 159.784 kb on - strand, within HMPREF1078_RS00680 at 159.784 kb on - strand, within HMPREF1078_RS00680 at 159.784 kb on - strand, within HMPREF1078_RS00680 at 159.787 kb on + strand, within HMPREF1078_RS00680 at 159.787 kb on + strand, within HMPREF1078_RS00680 at 159.787 kb on + strand, within HMPREF1078_RS00680 at 159.788 kb on - strand, within HMPREF1078_RS00680 at 159.788 kb on - strand, within HMPREF1078_RS00680 at 159.788 kb on - strand, within HMPREF1078_RS00680 at 159.872 kb on + strand, within HMPREF1078_RS00680 at 159.917 kb on + strand, within HMPREF1078_RS00680 at 159.917 kb on + strand, within HMPREF1078_RS00680 at 159.961 kb on - strand, within HMPREF1078_RS00680 at 159.992 kb on + strand, within HMPREF1078_RS00680 at 160.006 kb on + strand, within HMPREF1078_RS00680 at 160.030 kb on + strand, within HMPREF1078_RS00680 at 160.030 kb on + strand, within HMPREF1078_RS00680 at 160.030 kb on + strand, within HMPREF1078_RS00680 at 160.119 kb on + strand, within HMPREF1078_RS00680 at 160.120 kb on - strand, within HMPREF1078_RS00680 at 160.120 kb on - strand, within HMPREF1078_RS00680 at 160.210 kb on - strand, within HMPREF1078_RS00680 at 160.210 kb on - strand, within HMPREF1078_RS00680 at 160.233 kb on - strand, within HMPREF1078_RS00680 at 160.251 kb on - strand, within HMPREF1078_RS00680 at 160.254 kb on + strand, within HMPREF1078_RS00680 at 160.254 kb on + strand, within HMPREF1078_RS00680 at 160.254 kb on + strand, within HMPREF1078_RS00680 at 160.255 kb on - strand, within HMPREF1078_RS00680 at 160.255 kb on - strand, within HMPREF1078_RS00680 at 160.255 kb on - strand, within HMPREF1078_RS00680 at 160.323 kb on - strand, within HMPREF1078_RS00680 at 160.381 kb on - strand, within HMPREF1078_RS00680 at 160.593 kb on - strand, within HMPREF1078_RS00680 at 160.623 kb on + strand, within HMPREF1078_RS00680 at 160.642 kb on - strand, within HMPREF1078_RS00680 at 160.685 kb on + strand, within HMPREF1078_RS00680 at 160.689 kb on + strand, within HMPREF1078_RS00680 at 160.689 kb on + strand, within HMPREF1078_RS00680 at 160.689 kb on + strand, within HMPREF1078_RS00680 at 160.689 kb on + strand, within HMPREF1078_RS00680 at 160.690 kb on - strand, within HMPREF1078_RS00680 at 160.690 kb on - strand, within HMPREF1078_RS00680 at 160.755 kb on - strand, within HMPREF1078_RS00680 at 160.803 kb on + strand, within HMPREF1078_RS00680 at 160.804 kb on - strand, within HMPREF1078_RS00680 at 160.805 kb on + strand, within HMPREF1078_RS00680 at 160.847 kb on + strand, within HMPREF1078_RS00680 at 160.847 kb on + strand, within HMPREF1078_RS00680 at 160.848 kb on - strand, within HMPREF1078_RS00680 at 160.851 kb on + strand, within HMPREF1078_RS00680 at 160.852 kb on - strand, within HMPREF1078_RS00680 at 160.852 kb on - strand, within HMPREF1078_RS00680 at 160.922 kb on + strand, within HMPREF1078_RS00680 at 160.952 kb on - strand, within HMPREF1078_RS00680 at 160.979 kb on + strand, within HMPREF1078_RS00680 at 161.171 kb on - strand at 161.171 kb on - strand at 161.244 kb on + strand at 161.244 kb on + strand at 161.245 kb on - strand at 161.251 kb on + strand at 161.308 kb on - strand at 161.315 kb on + strand at 161.315 kb on + strand at 161.324 kb on - strand, within HMPREF1078_RS00685 at 161.367 kb on + strand, within HMPREF1078_RS00685 at 161.367 kb on + strand, within HMPREF1078_RS00685 at 161.440 kb on + strand, within HMPREF1078_RS00685 at 161.441 kb on - strand, within HMPREF1078_RS00685 at 161.441 kb on - strand, within HMPREF1078_RS00685 at 161.441 kb on - strand, within HMPREF1078_RS00685 at 161.441 kb on - strand, within HMPREF1078_RS00685 at 161.517 kb on + strand, within HMPREF1078_RS00685 at 161.666 kb on - strand, within HMPREF1078_RS00685 at 161.782 kb on + strand, within HMPREF1078_RS00685 at 161.798 kb on - strand, within HMPREF1078_RS00685 at 161.830 kb on + strand, within HMPREF1078_RS00685 at 161.831 kb on - strand, within HMPREF1078_RS00685 at 161.831 kb on - strand, within HMPREF1078_RS00685 at 161.831 kb on - strand, within HMPREF1078_RS00685 at 161.840 kb on - strand, within HMPREF1078_RS00685 at 161.840 kb on - strand, within HMPREF1078_RS00685 at 161.912 kb on + strand, within HMPREF1078_RS00685 at 161.912 kb on + strand, within HMPREF1078_RS00685 at 161.913 kb on - strand, within HMPREF1078_RS00685 at 161.913 kb on - strand, within HMPREF1078_RS00685 at 161.945 kb on - strand, within HMPREF1078_RS00685 at 161.990 kb on + strand at 161.991 kb on - strand at 162.004 kb on - strand at 162.050 kb on - strand at 162.108 kb on + strand at 162.109 kb on - strand at 162.109 kb on - strand at 162.150 kb on + strand, within HMPREF1078_RS00690 at 162.150 kb on + strand, within HMPREF1078_RS00690 at 162.174 kb on + strand, within HMPREF1078_RS00690 at 162.175 kb on - strand, within HMPREF1078_RS00690 at 162.201 kb on - strand at 162.201 kb on - strand at 162.226 kb on + strand at 162.226 kb on + strand at 162.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose 10 mg/mL (C) remove 158,277 - HMPREF1078_RS00675 0.51 -1.8 158,277 - HMPREF1078_RS00675 0.51 +1.3 158,277 - HMPREF1078_RS00675 0.51 +1.3 158,282 + HMPREF1078_RS00675 0.51 -1.2 158,409 + HMPREF1078_RS00675 0.58 -0.1 158,409 + HMPREF1078_RS00675 0.58 +0.3 158,413 + HMPREF1078_RS00675 0.59 +0.3 158,413 + HMPREF1078_RS00675 0.59 -0.0 158,672 - HMPREF1078_RS00675 0.73 +0.3 158,674 - HMPREF1078_RS00675 0.74 +0.2 158,733 - HMPREF1078_RS00675 0.77 +1.0 158,733 - HMPREF1078_RS00675 0.77 -0.3 158,736 - HMPREF1078_RS00675 0.77 -1.0 158,737 + HMPREF1078_RS00675 0.77 +1.0 158,737 + HMPREF1078_RS00675 0.77 -0.3 158,737 + HMPREF1078_RS00675 0.77 -0.7 158,737 + HMPREF1078_RS00675 0.77 +0.1 158,738 - HMPREF1078_RS00675 0.77 -1.2 158,738 - HMPREF1078_RS00675 0.77 -0.6 158,741 + HMPREF1078_RS00675 0.77 -0.4 158,741 + HMPREF1078_RS00675 0.77 -1.1 158,741 + HMPREF1078_RS00675 0.77 +0.7 158,741 + HMPREF1078_RS00675 0.77 -2.3 158,742 - HMPREF1078_RS00675 0.77 -0.0 158,744 - HMPREF1078_RS00675 0.78 +0.5 158,804 + HMPREF1078_RS00675 0.81 +0.4 158,805 - HMPREF1078_RS00675 0.81 -1.1 158,846 + HMPREF1078_RS00675 0.83 -1.6 158,846 + HMPREF1078_RS00675 0.83 -0.7 158,846 + HMPREF1078_RS00675 0.83 -1.4 158,847 - HMPREF1078_RS00675 0.83 +0.0 158,847 - HMPREF1078_RS00675 0.83 -0.7 158,847 - HMPREF1078_RS00675 0.83 +1.4 158,859 - HMPREF1078_RS00675 0.84 -0.1 158,903 + HMPREF1078_RS00675 0.87 -0.7 158,999 - +0.5 159,118 - -0.5 159,142 - -0.1 159,142 - +1.0 159,144 + -0.4 159,144 + +0.7 159,144 + +0.6 159,153 - -0.7 159,161 + +0.7 159,162 - +0.1 159,164 + -0.1 159,170 - +0.0 159,174 + -0.8 159,175 - +0.2 159,186 + -1.8 159,187 - +0.6 159,217 - +1.4 159,226 + -0.7 159,276 - -0.1 159,276 - -0.5 159,395 + -0.0 159,463 + HMPREF1078_RS00680 0.10 +0.4 159,531 + HMPREF1078_RS00680 0.14 -0.4 159,554 + HMPREF1078_RS00680 0.15 +0.1 159,554 + HMPREF1078_RS00680 0.15 +0.1 159,554 + HMPREF1078_RS00680 0.15 -1.1 159,555 - HMPREF1078_RS00680 0.15 -0.3 159,558 + HMPREF1078_RS00680 0.15 -1.2 159,558 + HMPREF1078_RS00680 0.15 -0.4 159,558 + HMPREF1078_RS00680 0.15 -0.4 159,559 - HMPREF1078_RS00680 0.15 -0.5 159,592 - HMPREF1078_RS00680 0.17 -0.7 159,608 + HMPREF1078_RS00680 0.18 +0.3 159,612 + HMPREF1078_RS00680 0.18 +0.0 159,612 + HMPREF1078_RS00680 0.18 -0.7 159,612 + HMPREF1078_RS00680 0.18 +1.5 159,612 + HMPREF1078_RS00680 0.18 +0.9 159,612 + HMPREF1078_RS00680 0.18 +0.1 159,613 - HMPREF1078_RS00680 0.18 +1.0 159,613 - HMPREF1078_RS00680 0.18 +0.6 159,613 - HMPREF1078_RS00680 0.18 -0.2 159,613 - HMPREF1078_RS00680 0.18 -0.8 159,660 - HMPREF1078_RS00680 0.20 +0.3 159,723 + HMPREF1078_RS00680 0.23 +1.4 159,743 + HMPREF1078_RS00680 0.24 -0.0 159,783 + HMPREF1078_RS00680 0.26 -0.3 159,784 - HMPREF1078_RS00680 0.26 +0.6 159,784 - HMPREF1078_RS00680 0.26 +0.4 159,784 - HMPREF1078_RS00680 0.26 +0.8 159,787 + HMPREF1078_RS00680 0.27 -2.4 159,787 + HMPREF1078_RS00680 0.27 -0.2 159,787 + HMPREF1078_RS00680 0.27 +1.0 159,788 - HMPREF1078_RS00680 0.27 -3.4 159,788 - HMPREF1078_RS00680 0.27 +0.7 159,788 - HMPREF1078_RS00680 0.27 +1.1 159,872 + HMPREF1078_RS00680 0.31 -1.6 159,917 + HMPREF1078_RS00680 0.33 +0.0 159,917 + HMPREF1078_RS00680 0.33 +0.0 159,961 - HMPREF1078_RS00680 0.35 +0.2 159,992 + HMPREF1078_RS00680 0.37 -0.5 160,006 + HMPREF1078_RS00680 0.38 -0.0 160,030 + HMPREF1078_RS00680 0.39 +0.3 160,030 + HMPREF1078_RS00680 0.39 +0.2 160,030 + HMPREF1078_RS00680 0.39 -0.1 160,119 + HMPREF1078_RS00680 0.43 +0.4 160,120 - HMPREF1078_RS00680 0.43 -0.1 160,120 - HMPREF1078_RS00680 0.43 +0.2 160,210 - HMPREF1078_RS00680 0.48 -0.9 160,210 - HMPREF1078_RS00680 0.48 -0.5 160,233 - HMPREF1078_RS00680 0.49 -0.0 160,251 - HMPREF1078_RS00680 0.50 -0.3 160,254 + HMPREF1078_RS00680 0.50 +0.2 160,254 + HMPREF1078_RS00680 0.50 -0.7 160,254 + HMPREF1078_RS00680 0.50 +1.2 160,255 - HMPREF1078_RS00680 0.50 -1.5 160,255 - HMPREF1078_RS00680 0.50 +0.6 160,255 - HMPREF1078_RS00680 0.50 +0.4 160,323 - HMPREF1078_RS00680 0.54 -0.0 160,381 - HMPREF1078_RS00680 0.56 -0.2 160,593 - HMPREF1078_RS00680 0.67 -0.1 160,623 + HMPREF1078_RS00680 0.69 -0.6 160,642 - HMPREF1078_RS00680 0.70 -1.1 160,685 + HMPREF1078_RS00680 0.72 -0.3 160,689 + HMPREF1078_RS00680 0.72 -0.5 160,689 + HMPREF1078_RS00680 0.72 -2.6 160,689 + HMPREF1078_RS00680 0.72 -0.2 160,689 + HMPREF1078_RS00680 0.72 -1.5 160,690 - HMPREF1078_RS00680 0.72 -0.3 160,690 - HMPREF1078_RS00680 0.72 -0.7 160,755 - HMPREF1078_RS00680 0.75 +1.2 160,803 + HMPREF1078_RS00680 0.78 +1.0 160,804 - HMPREF1078_RS00680 0.78 -0.3 160,805 + HMPREF1078_RS00680 0.78 +0.2 160,847 + HMPREF1078_RS00680 0.80 -0.4 160,847 + HMPREF1078_RS00680 0.80 +0.3 160,848 - HMPREF1078_RS00680 0.80 +0.4 160,851 + HMPREF1078_RS00680 0.80 -0.1 160,852 - HMPREF1078_RS00680 0.80 -0.1 160,852 - HMPREF1078_RS00680 0.80 -1.0 160,922 + HMPREF1078_RS00680 0.84 -1.0 160,952 - HMPREF1078_RS00680 0.85 -0.2 160,979 + HMPREF1078_RS00680 0.87 +0.2 161,171 - +0.6 161,171 - +0.7 161,244 + -0.2 161,244 + -0.6 161,245 - -0.0 161,251 + -0.1 161,308 - -0.3 161,315 + -0.3 161,315 + -1.2 161,324 - HMPREF1078_RS00685 0.11 -0.4 161,367 + HMPREF1078_RS00685 0.16 +1.0 161,367 + HMPREF1078_RS00685 0.16 -0.2 161,440 + HMPREF1078_RS00685 0.25 +0.0 161,441 - HMPREF1078_RS00685 0.25 -0.0 161,441 - HMPREF1078_RS00685 0.25 -0.5 161,441 - HMPREF1078_RS00685 0.25 +1.0 161,441 - HMPREF1078_RS00685 0.25 +0.1 161,517 + HMPREF1078_RS00685 0.35 -0.4 161,666 - HMPREF1078_RS00685 0.53 -0.8 161,782 + HMPREF1078_RS00685 0.68 -0.7 161,798 - HMPREF1078_RS00685 0.70 -0.5 161,830 + HMPREF1078_RS00685 0.73 -0.2 161,831 - HMPREF1078_RS00685 0.74 -0.4 161,831 - HMPREF1078_RS00685 0.74 -0.6 161,831 - HMPREF1078_RS00685 0.74 -0.3 161,840 - HMPREF1078_RS00685 0.75 +1.0 161,840 - HMPREF1078_RS00685 0.75 -0.3 161,912 + HMPREF1078_RS00685 0.84 -0.1 161,912 + HMPREF1078_RS00685 0.84 +1.2 161,913 - HMPREF1078_RS00685 0.84 -0.3 161,913 - HMPREF1078_RS00685 0.84 -0.2 161,945 - HMPREF1078_RS00685 0.88 -0.3 161,990 + -0.2 161,991 - -0.2 162,004 - -0.4 162,050 - -0.1 162,108 + -1.5 162,109 - -0.3 162,109 - -0.3 162,150 + HMPREF1078_RS00690 0.36 +0.6 162,150 + HMPREF1078_RS00690 0.36 -0.3 162,174 + HMPREF1078_RS00690 0.69 -1.4 162,175 - HMPREF1078_RS00690 0.71 -1.4 162,201 - -0.7 162,201 - +0.1 162,226 + +0.1 162,226 + +1.0 162,227 - -0.0
Or see this region's nucleotide sequence