Experiment: Sucrose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17685 and HMPREF1078_RS17690 are separated by 4 nucleotides HMPREF1078_RS17690 and HMPREF1078_RS17695 are separated by 15 nucleotides HMPREF1078_RS17695 and HMPREF1078_RS17700 are separated by 56 nucleotides
HMPREF1078_RS17685: HMPREF1078_RS17685 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 102,338 to 102,853
_RS17685
HMPREF1078_RS17690: HMPREF1078_RS17690 - S4 domain-containing protein, at 102,858 to 103,463
_RS17690
HMPREF1078_RS17695: HMPREF1078_RS17695 - adenosylcobinamide-phosphate synthase CbiB, at 103,479 to 104,432
_RS17695
HMPREF1078_RS17700: HMPREF1078_RS17700 - HAMP domain-containing sensor histidine kinase, at 104,489 to 105,775
_RS17700
Position (kb) 103
104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 102.521 kb on - strand, within HMPREF1078_RS17685 at 102.763 kb on + strand, within HMPREF1078_RS17685 at 102.839 kb on - strand at 102.839 kb on - strand at 102.859 kb on + strand at 103.105 kb on + strand, within HMPREF1078_RS17690 at 103.105 kb on + strand, within HMPREF1078_RS17690 at 103.106 kb on - strand, within HMPREF1078_RS17690 at 103.120 kb on - strand, within HMPREF1078_RS17690 at 103.138 kb on - strand, within HMPREF1078_RS17690 at 103.305 kb on + strand, within HMPREF1078_RS17690 at 103.305 kb on + strand, within HMPREF1078_RS17690 at 103.305 kb on + strand, within HMPREF1078_RS17690 at 103.306 kb on - strand, within HMPREF1078_RS17690 at 103.306 kb on - strand, within HMPREF1078_RS17690 at 103.372 kb on - strand, within HMPREF1078_RS17690 at 103.455 kb on + strand at 103.455 kb on + strand at 103.455 kb on + strand at 103.456 kb on - strand at 103.468 kb on + strand at 103.469 kb on - strand at 103.469 kb on - strand at 103.476 kb on + strand at 103.487 kb on + strand at 103.491 kb on + strand at 103.497 kb on + strand at 103.497 kb on + strand at 103.497 kb on + strand at 103.498 kb on - strand at 103.501 kb on - strand at 103.511 kb on + strand at 103.601 kb on - strand, within HMPREF1078_RS17695 at 103.601 kb on - strand, within HMPREF1078_RS17695 at 103.793 kb on + strand, within HMPREF1078_RS17695 at 103.794 kb on - strand, within HMPREF1078_RS17695 at 103.840 kb on - strand, within HMPREF1078_RS17695 at 103.840 kb on - strand, within HMPREF1078_RS17695 at 103.843 kb on + strand, within HMPREF1078_RS17695 at 103.881 kb on - strand, within HMPREF1078_RS17695 at 103.881 kb on - strand, within HMPREF1078_RS17695 at 104.077 kb on - strand, within HMPREF1078_RS17695 at 104.156 kb on + strand, within HMPREF1078_RS17695 at 104.156 kb on + strand, within HMPREF1078_RS17695 at 104.156 kb on + strand, within HMPREF1078_RS17695 at 104.163 kb on + strand, within HMPREF1078_RS17695 at 104.163 kb on + strand, within HMPREF1078_RS17695 at 104.163 kb on + strand, within HMPREF1078_RS17695 at 104.163 kb on + strand, within HMPREF1078_RS17695 at 104.164 kb on - strand, within HMPREF1078_RS17695 at 104.164 kb on - strand, within HMPREF1078_RS17695 at 104.215 kb on + strand, within HMPREF1078_RS17695 at 104.233 kb on - strand, within HMPREF1078_RS17695 at 104.428 kb on + strand at 104.429 kb on - strand at 104.432 kb on + strand at 104.432 kb on + strand at 104.432 kb on + strand at 104.466 kb on - strand at 104.525 kb on - strand at 104.565 kb on + strand at 104.650 kb on + strand, within HMPREF1078_RS17700 at 104.650 kb on + strand, within HMPREF1078_RS17700 at 104.692 kb on + strand, within HMPREF1078_RS17700 at 104.861 kb on + strand, within HMPREF1078_RS17700 at 104.861 kb on + strand, within HMPREF1078_RS17700 at 104.861 kb on + strand, within HMPREF1078_RS17700 at 104.871 kb on + strand, within HMPREF1078_RS17700 at 104.872 kb on - strand, within HMPREF1078_RS17700 at 104.872 kb on - strand, within HMPREF1078_RS17700 at 104.872 kb on - strand, within HMPREF1078_RS17700 at 104.969 kb on - strand, within HMPREF1078_RS17700 at 104.985 kb on + strand, within HMPREF1078_RS17700 at 104.985 kb on + strand, within HMPREF1078_RS17700 at 104.986 kb on - strand, within HMPREF1078_RS17700 at 104.986 kb on - strand, within HMPREF1078_RS17700 at 104.995 kb on + strand, within HMPREF1078_RS17700 at 104.996 kb on - strand, within HMPREF1078_RS17700 at 104.996 kb on - strand, within HMPREF1078_RS17700 at 105.140 kb on + strand, within HMPREF1078_RS17700 at 105.140 kb on + strand, within HMPREF1078_RS17700 at 105.247 kb on - strand, within HMPREF1078_RS17700 at 105.273 kb on + strand, within HMPREF1078_RS17700 at 105.273 kb on + strand, within HMPREF1078_RS17700 at 105.342 kb on + strand, within HMPREF1078_RS17700 at 105.343 kb on - strand, within HMPREF1078_RS17700 at 105.377 kb on + strand, within HMPREF1078_RS17700 at 105.423 kb on + strand, within HMPREF1078_RS17700
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mg/mL (C) remove 102,521 - HMPREF1078_RS17685 0.35 -1.9 102,763 + HMPREF1078_RS17685 0.82 +1.0 102,839 - +0.2 102,839 - -2.0 102,859 + +0.5 103,105 + HMPREF1078_RS17690 0.41 -2.2 103,105 + HMPREF1078_RS17690 0.41 -2.7 103,106 - HMPREF1078_RS17690 0.41 -1.2 103,120 - HMPREF1078_RS17690 0.43 -0.4 103,138 - HMPREF1078_RS17690 0.46 -1.3 103,305 + HMPREF1078_RS17690 0.74 -1.8 103,305 + HMPREF1078_RS17690 0.74 -0.8 103,305 + HMPREF1078_RS17690 0.74 -2.2 103,306 - HMPREF1078_RS17690 0.74 -2.0 103,306 - HMPREF1078_RS17690 0.74 -2.1 103,372 - HMPREF1078_RS17690 0.85 -0.2 103,455 + -2.1 103,455 + +1.0 103,455 + +0.0 103,456 - -0.0 103,468 + -2.1 103,469 - -0.8 103,469 - -2.6 103,476 + -0.7 103,487 + +0.4 103,491 + -2.6 103,497 + +0.9 103,497 + -1.2 103,497 + -1.9 103,498 - +1.3 103,501 - +0.7 103,511 + -2.9 103,601 - HMPREF1078_RS17695 0.13 +0.7 103,601 - HMPREF1078_RS17695 0.13 +0.5 103,793 + HMPREF1078_RS17695 0.33 -3.0 103,794 - HMPREF1078_RS17695 0.33 +1.0 103,840 - HMPREF1078_RS17695 0.38 -1.7 103,840 - HMPREF1078_RS17695 0.38 -1.3 103,843 + HMPREF1078_RS17695 0.38 +0.7 103,881 - HMPREF1078_RS17695 0.42 +1.7 103,881 - HMPREF1078_RS17695 0.42 +0.3 104,077 - HMPREF1078_RS17695 0.63 -0.3 104,156 + HMPREF1078_RS17695 0.71 -2.2 104,156 + HMPREF1078_RS17695 0.71 -1.7 104,156 + HMPREF1078_RS17695 0.71 -2.7 104,163 + HMPREF1078_RS17695 0.72 +0.0 104,163 + HMPREF1078_RS17695 0.72 -1.7 104,163 + HMPREF1078_RS17695 0.72 -1.4 104,163 + HMPREF1078_RS17695 0.72 -1.7 104,164 - HMPREF1078_RS17695 0.72 +0.5 104,164 - HMPREF1078_RS17695 0.72 +1.0 104,215 + HMPREF1078_RS17695 0.77 -2.3 104,233 - HMPREF1078_RS17695 0.79 +1.3 104,428 + -0.9 104,429 - +0.0 104,432 + -2.9 104,432 + +0.2 104,432 + -1.6 104,466 - +2.2 104,525 - +3.0 104,565 + +2.2 104,650 + HMPREF1078_RS17700 0.13 +2.2 104,650 + HMPREF1078_RS17700 0.13 +1.5 104,692 + HMPREF1078_RS17700 0.16 +3.7 104,861 + HMPREF1078_RS17700 0.29 +2.4 104,861 + HMPREF1078_RS17700 0.29 +3.4 104,861 + HMPREF1078_RS17700 0.29 +1.4 104,871 + HMPREF1078_RS17700 0.30 +0.0 104,872 - HMPREF1078_RS17700 0.30 +1.5 104,872 - HMPREF1078_RS17700 0.30 +0.5 104,872 - HMPREF1078_RS17700 0.30 +1.6 104,969 - HMPREF1078_RS17700 0.37 +1.9 104,985 + HMPREF1078_RS17700 0.39 +2.6 104,985 + HMPREF1078_RS17700 0.39 +3.0 104,986 - HMPREF1078_RS17700 0.39 +2.3 104,986 - HMPREF1078_RS17700 0.39 +3.0 104,995 + HMPREF1078_RS17700 0.39 +1.9 104,996 - HMPREF1078_RS17700 0.39 +1.4 104,996 - HMPREF1078_RS17700 0.39 +2.6 105,140 + HMPREF1078_RS17700 0.51 +3.3 105,140 + HMPREF1078_RS17700 0.51 +1.3 105,247 - HMPREF1078_RS17700 0.59 +2.2 105,273 + HMPREF1078_RS17700 0.61 +2.7 105,273 + HMPREF1078_RS17700 0.61 +4.5 105,342 + HMPREF1078_RS17700 0.66 +2.5 105,343 - HMPREF1078_RS17700 0.66 +2.1 105,377 + HMPREF1078_RS17700 0.69 +1.5 105,423 + HMPREF1078_RS17700 0.73 +2.4
Or see this region's nucleotide sequence