Experiment: Sucrose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17430 and HMPREF1078_RS17435 are separated by 343 nucleotides HMPREF1078_RS17435 and HMPREF1078_RS17440 are separated by 386 nucleotides HMPREF1078_RS17440 and HMPREF1078_RS17445 are separated by 16 nucleotides
HMPREF1078_RS17430: HMPREF1078_RS17430 - hypothetical protein, at 39,724 to 40,863
_RS17430
HMPREF1078_RS17435: HMPREF1078_RS17435 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 41,207 to 42,520
_RS17435
HMPREF1078_RS17440: HMPREF1078_RS17440 - hypothetical protein, at 42,907 to 43,134
_RS17440
HMPREF1078_RS17445: HMPREF1078_RS17445 - lipopolysaccharide biosynthesis protein, at 43,151 to 44,596
_RS17445
Position (kb) 41
42
43 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6 at 40.970 kb on + strand at 40.999 kb on - strand at 41.014 kb on + strand at 41.036 kb on - strand at 41.043 kb on + strand at 41.044 kb on - strand at 41.044 kb on - strand at 41.063 kb on - strand at 41.177 kb on + strand at 41.178 kb on - strand at 41.184 kb on - strand at 41.191 kb on - strand at 41.191 kb on - strand at 41.200 kb on + strand at 41.201 kb on - strand at 41.214 kb on + strand at 41.218 kb on + strand at 41.218 kb on + strand at 41.218 kb on + strand at 41.234 kb on + strand at 41.234 kb on + strand at 41.234 kb on + strand at 41.235 kb on - strand at 41.235 kb on - strand at 41.235 kb on - strand at 41.235 kb on - strand at 41.333 kb on - strand at 41.333 kb on - strand at 41.333 kb on - strand at 41.341 kb on + strand, within HMPREF1078_RS17435 at 41.342 kb on - strand, within HMPREF1078_RS17435 at 41.345 kb on + strand, within HMPREF1078_RS17435 at 41.345 kb on + strand, within HMPREF1078_RS17435 at 41.345 kb on + strand, within HMPREF1078_RS17435 at 41.345 kb on + strand, within HMPREF1078_RS17435 at 41.346 kb on - strand, within HMPREF1078_RS17435 at 41.458 kb on - strand, within HMPREF1078_RS17435 at 41.461 kb on + strand, within HMPREF1078_RS17435 at 41.461 kb on + strand, within HMPREF1078_RS17435 at 41.483 kb on - strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.498 kb on + strand, within HMPREF1078_RS17435 at 41.499 kb on - strand, within HMPREF1078_RS17435 at 41.499 kb on - strand, within HMPREF1078_RS17435 at 41.499 kb on - strand, within HMPREF1078_RS17435 at 41.519 kb on - strand, within HMPREF1078_RS17435 at 41.590 kb on + strand, within HMPREF1078_RS17435 at 41.702 kb on - strand, within HMPREF1078_RS17435 at 41.702 kb on - strand, within HMPREF1078_RS17435 at 41.702 kb on - strand, within HMPREF1078_RS17435 at 41.769 kb on - strand, within HMPREF1078_RS17435 at 41.814 kb on + strand, within HMPREF1078_RS17435 at 41.814 kb on + strand, within HMPREF1078_RS17435 at 41.814 kb on + strand, within HMPREF1078_RS17435 at 41.814 kb on + strand, within HMPREF1078_RS17435 at 41.815 kb on - strand, within HMPREF1078_RS17435 at 41.815 kb on - strand, within HMPREF1078_RS17435 at 41.815 kb on - strand, within HMPREF1078_RS17435 at 41.816 kb on - strand, within HMPREF1078_RS17435 at 41.837 kb on + strand, within HMPREF1078_RS17435 at 41.838 kb on - strand, within HMPREF1078_RS17435 at 41.838 kb on - strand, within HMPREF1078_RS17435 at 41.838 kb on - strand, within HMPREF1078_RS17435 at 41.875 kb on + strand, within HMPREF1078_RS17435 at 41.875 kb on + strand, within HMPREF1078_RS17435 at 41.923 kb on + strand, within HMPREF1078_RS17435 at 41.924 kb on - strand, within HMPREF1078_RS17435 at 41.924 kb on - strand, within HMPREF1078_RS17435 at 41.975 kb on + strand, within HMPREF1078_RS17435 at 41.976 kb on - strand, within HMPREF1078_RS17435 at 42.016 kb on + strand, within HMPREF1078_RS17435 at 42.017 kb on - strand, within HMPREF1078_RS17435 at 42.018 kb on + strand, within HMPREF1078_RS17435 at 42.018 kb on + strand, within HMPREF1078_RS17435 at 42.070 kb on - strand, within HMPREF1078_RS17435 at 42.154 kb on + strand, within HMPREF1078_RS17435 at 42.154 kb on + strand, within HMPREF1078_RS17435 at 42.155 kb on - strand, within HMPREF1078_RS17435 at 42.160 kb on + strand, within HMPREF1078_RS17435 at 42.161 kb on - strand, within HMPREF1078_RS17435 at 42.161 kb on - strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.166 kb on + strand, within HMPREF1078_RS17435 at 42.167 kb on - strand, within HMPREF1078_RS17435 at 42.167 kb on - strand, within HMPREF1078_RS17435 at 42.203 kb on - strand, within HMPREF1078_RS17435 at 42.203 kb on - strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.263 kb on + strand, within HMPREF1078_RS17435 at 42.264 kb on - strand, within HMPREF1078_RS17435 at 42.264 kb on - strand, within HMPREF1078_RS17435 at 42.264 kb on - strand, within HMPREF1078_RS17435 at 42.289 kb on - strand, within HMPREF1078_RS17435 at 42.324 kb on - strand, within HMPREF1078_RS17435 at 42.338 kb on + strand, within HMPREF1078_RS17435 at 42.338 kb on + strand, within HMPREF1078_RS17435 at 42.338 kb on + strand, within HMPREF1078_RS17435 at 42.339 kb on - strand, within HMPREF1078_RS17435 at 42.339 kb on - strand, within HMPREF1078_RS17435 at 42.339 kb on - strand, within HMPREF1078_RS17435 at 42.349 kb on - strand, within HMPREF1078_RS17435 at 42.464 kb on + strand at 42.465 kb on - strand at 42.465 kb on - strand at 42.511 kb on - strand at 42.518 kb on + strand at 42.518 kb on + strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.519 kb on - strand at 42.522 kb on + strand at 42.522 kb on + strand at 42.522 kb on + strand at 42.523 kb on - strand at 42.555 kb on + strand at 42.558 kb on + strand at 42.558 kb on + strand at 42.569 kb on + strand at 42.601 kb on + strand at 42.601 kb on + strand at 42.602 kb on - strand at 42.602 kb on - strand at 42.602 kb on - strand at 42.603 kb on + strand at 42.604 kb on - strand at 42.632 kb on + strand at 42.636 kb on + strand at 42.636 kb on + strand at 42.637 kb on - strand at 42.637 kb on - strand at 42.663 kb on + strand at 42.663 kb on + strand at 42.663 kb on + strand at 42.664 kb on - strand at 42.678 kb on + strand at 42.678 kb on + strand at 42.689 kb on + strand at 42.689 kb on + strand at 42.692 kb on + strand at 42.692 kb on + strand at 42.692 kb on + strand at 42.707 kb on + strand at 42.707 kb on + strand at 42.707 kb on + strand at 42.732 kb on + strand at 42.732 kb on + strand at 42.732 kb on + strand at 42.733 kb on - strand at 42.733 kb on - strand at 42.734 kb on + strand at 42.735 kb on - strand at 42.735 kb on - strand at 42.735 kb on - strand at 42.735 kb on - strand at 42.754 kb on - strand at 42.764 kb on - strand at 42.764 kb on - strand at 42.822 kb on + strand at 42.823 kb on - strand at 42.825 kb on + strand at 42.826 kb on - strand at 42.826 kb on - strand at 42.829 kb on + strand at 42.829 kb on + strand at 42.829 kb on + strand at 42.830 kb on - strand at 42.830 kb on - strand at 42.854 kb on - strand at 42.898 kb on + strand at 42.898 kb on + strand at 42.898 kb on + strand at 42.923 kb on + strand at 42.927 kb on - strand at 42.930 kb on + strand, within HMPREF1078_RS17440 at 42.930 kb on + strand, within HMPREF1078_RS17440 at 42.930 kb on + strand, within HMPREF1078_RS17440 at 42.930 kb on + strand, within HMPREF1078_RS17440 at 42.931 kb on - strand, within HMPREF1078_RS17440 at 42.931 kb on - strand, within HMPREF1078_RS17440 at 42.931 kb on - strand, within HMPREF1078_RS17440 at 42.931 kb on - strand, within HMPREF1078_RS17440 at 42.956 kb on + strand, within HMPREF1078_RS17440 at 42.956 kb on + strand, within HMPREF1078_RS17440 at 42.983 kb on - strand, within HMPREF1078_RS17440 at 42.996 kb on + strand, within HMPREF1078_RS17440 at 43.000 kb on + strand, within HMPREF1078_RS17440 at 43.007 kb on + strand, within HMPREF1078_RS17440 at 43.007 kb on + strand, within HMPREF1078_RS17440 at 43.008 kb on - strand, within HMPREF1078_RS17440 at 43.008 kb on - strand, within HMPREF1078_RS17440 at 43.063 kb on + strand, within HMPREF1078_RS17440 at 43.110 kb on + strand, within HMPREF1078_RS17440 at 43.110 kb on + strand, within HMPREF1078_RS17440 at 43.111 kb on - strand, within HMPREF1078_RS17440 at 43.111 kb on - strand, within HMPREF1078_RS17440 at 43.120 kb on - strand at 43.120 kb on - strand at 43.148 kb on + strand at 43.476 kb on - strand, within HMPREF1078_RS17445
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mg/mL (C) remove 40,970 + +0.2 40,999 - +0.7 41,014 + +1.9 41,036 - +6.0 41,043 + -0.8 41,044 - +0.6 41,044 - +1.4 41,063 - -3.5 41,177 + +0.1 41,178 - -0.8 41,184 - +0.0 41,191 - +0.3 41,191 - -2.0 41,200 + -1.1 41,201 - -3.0 41,214 + -4.0 41,218 + -0.9 41,218 + -1.6 41,218 + +1.7 41,234 + -1.4 41,234 + +0.0 41,234 + -0.6 41,235 - -2.3 41,235 - -0.9 41,235 - +0.3 41,235 - -3.0 41,333 - +1.0 41,333 - -0.4 41,333 - -0.8 41,341 + HMPREF1078_RS17435 0.10 -0.9 41,342 - HMPREF1078_RS17435 0.10 -1.5 41,345 + HMPREF1078_RS17435 0.11 -2.4 41,345 + HMPREF1078_RS17435 0.11 -4.5 41,345 + HMPREF1078_RS17435 0.11 -2.1 41,345 + HMPREF1078_RS17435 0.11 -0.9 41,346 - HMPREF1078_RS17435 0.11 -1.4 41,458 - HMPREF1078_RS17435 0.19 +1.3 41,461 + HMPREF1078_RS17435 0.19 -4.1 41,461 + HMPREF1078_RS17435 0.19 -1.4 41,483 - HMPREF1078_RS17435 0.21 -2.6 41,498 + HMPREF1078_RS17435 0.22 -1.7 41,498 + HMPREF1078_RS17435 0.22 -0.6 41,498 + HMPREF1078_RS17435 0.22 -0.4 41,498 + HMPREF1078_RS17435 0.22 +0.3 41,498 + HMPREF1078_RS17435 0.22 -3.1 41,498 + HMPREF1078_RS17435 0.22 -0.1 41,498 + HMPREF1078_RS17435 0.22 -1.0 41,498 + HMPREF1078_RS17435 0.22 -1.6 41,499 - HMPREF1078_RS17435 0.22 -2.8 41,499 - HMPREF1078_RS17435 0.22 -1.1 41,499 - HMPREF1078_RS17435 0.22 +0.0 41,519 - HMPREF1078_RS17435 0.24 +0.2 41,590 + HMPREF1078_RS17435 0.29 -1.2 41,702 - HMPREF1078_RS17435 0.38 -2.0 41,702 - HMPREF1078_RS17435 0.38 -0.8 41,702 - HMPREF1078_RS17435 0.38 -3.5 41,769 - HMPREF1078_RS17435 0.43 +0.1 41,814 + HMPREF1078_RS17435 0.46 -2.0 41,814 + HMPREF1078_RS17435 0.46 -1.4 41,814 + HMPREF1078_RS17435 0.46 +0.0 41,814 + HMPREF1078_RS17435 0.46 -0.7 41,815 - HMPREF1078_RS17435 0.46 -1.5 41,815 - HMPREF1078_RS17435 0.46 +1.7 41,815 - HMPREF1078_RS17435 0.46 -1.5 41,816 - HMPREF1078_RS17435 0.46 -1.3 41,837 + HMPREF1078_RS17435 0.48 -1.0 41,838 - HMPREF1078_RS17435 0.48 -0.4 41,838 - HMPREF1078_RS17435 0.48 +1.3 41,838 - HMPREF1078_RS17435 0.48 -0.1 41,875 + HMPREF1078_RS17435 0.51 -1.5 41,875 + HMPREF1078_RS17435 0.51 -2.0 41,923 + HMPREF1078_RS17435 0.54 -1.5 41,924 - HMPREF1078_RS17435 0.55 -0.8 41,924 - HMPREF1078_RS17435 0.55 -1.0 41,975 + HMPREF1078_RS17435 0.58 -4.3 41,976 - HMPREF1078_RS17435 0.59 -0.8 42,016 + HMPREF1078_RS17435 0.62 -1.5 42,017 - HMPREF1078_RS17435 0.62 -0.6 42,018 + HMPREF1078_RS17435 0.62 -1.4 42,018 + HMPREF1078_RS17435 0.62 -1.8 42,070 - HMPREF1078_RS17435 0.66 -0.9 42,154 + HMPREF1078_RS17435 0.72 +0.0 42,154 + HMPREF1078_RS17435 0.72 -0.4 42,155 - HMPREF1078_RS17435 0.72 -0.5 42,160 + HMPREF1078_RS17435 0.73 -2.0 42,161 - HMPREF1078_RS17435 0.73 -1.0 42,161 - HMPREF1078_RS17435 0.73 -0.8 42,166 + HMPREF1078_RS17435 0.73 -1.6 42,166 + HMPREF1078_RS17435 0.73 -0.3 42,166 + HMPREF1078_RS17435 0.73 -1.5 42,166 + HMPREF1078_RS17435 0.73 -2.3 42,166 + HMPREF1078_RS17435 0.73 -0.2 42,167 - HMPREF1078_RS17435 0.73 -1.4 42,167 - HMPREF1078_RS17435 0.73 -2.3 42,203 - HMPREF1078_RS17435 0.76 -2.4 42,203 - HMPREF1078_RS17435 0.76 -2.0 42,263 + HMPREF1078_RS17435 0.80 -0.8 42,263 + HMPREF1078_RS17435 0.80 -3.0 42,263 + HMPREF1078_RS17435 0.80 -0.4 42,263 + HMPREF1078_RS17435 0.80 -0.2 42,263 + HMPREF1078_RS17435 0.80 -3.2 42,263 + HMPREF1078_RS17435 0.80 -0.3 42,264 - HMPREF1078_RS17435 0.80 -1.0 42,264 - HMPREF1078_RS17435 0.80 -2.9 42,264 - HMPREF1078_RS17435 0.80 -1.3 42,289 - HMPREF1078_RS17435 0.82 -1.3 42,324 - HMPREF1078_RS17435 0.85 -0.1 42,338 + HMPREF1078_RS17435 0.86 -2.2 42,338 + HMPREF1078_RS17435 0.86 +0.1 42,338 + HMPREF1078_RS17435 0.86 -1.6 42,339 - HMPREF1078_RS17435 0.86 +0.0 42,339 - HMPREF1078_RS17435 0.86 +1.0 42,339 - HMPREF1078_RS17435 0.86 -1.3 42,349 - HMPREF1078_RS17435 0.87 -1.7 42,464 + -2.6 42,465 - -1.1 42,465 - +0.9 42,511 - -0.1 42,518 + +2.3 42,518 + -1.3 42,519 - -1.1 42,519 - +1.3 42,519 - -2.6 42,519 - -1.5 42,519 - -2.1 42,519 - +0.7 42,519 - -0.9 42,519 - +0.7 42,519 - +0.5 42,522 + +1.1 42,522 + -0.1 42,522 + -0.0 42,523 - -1.3 42,555 + -0.7 42,558 + -2.0 42,558 + +0.2 42,569 + -0.3 42,601 + -0.8 42,601 + -0.5 42,602 - -2.6 42,602 - +0.2 42,602 - +0.0 42,603 + +0.6 42,604 - -1.4 42,632 + +0.6 42,636 + -0.5 42,636 + +0.0 42,637 - -0.6 42,637 - +0.2 42,663 + -0.6 42,663 + +0.1 42,663 + -1.0 42,664 - +0.2 42,678 + -0.5 42,678 + -0.2 42,689 + -0.0 42,689 + +0.4 42,692 + +2.7 42,692 + +0.7 42,692 + -2.3 42,707 + +2.7 42,707 + -0.2 42,707 + +1.2 42,732 + -0.2 42,732 + +1.0 42,732 + +1.1 42,733 - -1.6 42,733 - -1.8 42,734 + +0.5 42,735 - -0.8 42,735 - +0.0 42,735 - -1.8 42,735 - -1.6 42,754 - +0.0 42,764 - -1.1 42,764 - -1.1 42,822 + -0.1 42,823 - -1.3 42,825 + +0.1 42,826 - -1.6 42,826 - +1.0 42,829 + +1.4 42,829 + +0.5 42,829 + +0.5 42,830 - -0.7 42,830 - +0.2 42,854 - -0.4 42,898 + +1.4 42,898 + +2.2 42,898 + -2.2 42,923 + -1.1 42,927 - -0.8 42,930 + HMPREF1078_RS17440 0.10 -0.1 42,930 + HMPREF1078_RS17440 0.10 -0.1 42,930 + HMPREF1078_RS17440 0.10 +1.4 42,930 + HMPREF1078_RS17440 0.10 +1.3 42,931 - HMPREF1078_RS17440 0.11 +0.7 42,931 - HMPREF1078_RS17440 0.11 -0.1 42,931 - HMPREF1078_RS17440 0.11 +0.3 42,931 - HMPREF1078_RS17440 0.11 +0.3 42,956 + HMPREF1078_RS17440 0.21 -0.9 42,956 + HMPREF1078_RS17440 0.21 +1.5 42,983 - HMPREF1078_RS17440 0.33 +0.3 42,996 + HMPREF1078_RS17440 0.39 +1.7 43,000 + HMPREF1078_RS17440 0.41 +1.0 43,007 + HMPREF1078_RS17440 0.44 +0.2 43,007 + HMPREF1078_RS17440 0.44 +0.7 43,008 - HMPREF1078_RS17440 0.44 +1.3 43,008 - HMPREF1078_RS17440 0.44 +0.0 43,063 + HMPREF1078_RS17440 0.68 +1.3 43,110 + HMPREF1078_RS17440 0.89 -0.6 43,110 + HMPREF1078_RS17440 0.89 -2.3 43,111 - HMPREF1078_RS17440 0.89 +0.2 43,111 - HMPREF1078_RS17440 0.89 +0.5 43,120 - -1.7 43,120 - -0.7 43,148 + +0.2 43,476 - HMPREF1078_RS17445 0.22 +1.3
Or see this region's nucleotide sequence