Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS17370

Experiment: Sucrose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS17360 and HMPREF1078_RS17365 are separated by 54 nucleotidesHMPREF1078_RS17365 and HMPREF1078_RS17370 are separated by 42 nucleotidesHMPREF1078_RS17370 and HMPREF1078_RS17375 are separated by 264 nucleotides HMPREF1078_RS17360: HMPREF1078_RS17360 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 25,276 to 26,733 _RS17360 HMPREF1078_RS17365: HMPREF1078_RS17365 - LytTR family DNA-binding domain-containing protein, at 26,788 to 27,501 _RS17365 HMPREF1078_RS17370: HMPREF1078_RS17370 - histidine kinase, at 27,544 to 28,593 _RS17370 HMPREF1078_RS17375: HMPREF1078_RS17375 - ABC transporter permease, at 28,858 to 30,078 _RS17375 Position (kb) 27 28 29Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 26.595 kb on + strandat 26.612 kb on - strandat 26.612 kb on - strandat 26.622 kb on + strandat 26.645 kb on - strandat 26.671 kb on + strandat 26.671 kb on + strandat 26.671 kb on + strandat 26.672 kb on - strandat 26.776 kb on - strandat 26.776 kb on - strandat 26.840 kb on + strandat 26.841 kb on - strandat 26.841 kb on - strandat 26.861 kb on + strand, within HMPREF1078_RS17365at 26.862 kb on - strand, within HMPREF1078_RS17365at 26.862 kb on - strand, within HMPREF1078_RS17365at 26.917 kb on + strand, within HMPREF1078_RS17365at 26.936 kb on - strand, within HMPREF1078_RS17365at 26.936 kb on - strand, within HMPREF1078_RS17365at 27.035 kb on + strand, within HMPREF1078_RS17365at 27.036 kb on - strand, within HMPREF1078_RS17365at 27.054 kb on + strand, within HMPREF1078_RS17365at 27.057 kb on - strand, within HMPREF1078_RS17365at 27.092 kb on + strand, within HMPREF1078_RS17365at 27.141 kb on + strand, within HMPREF1078_RS17365at 27.142 kb on - strand, within HMPREF1078_RS17365at 27.142 kb on - strand, within HMPREF1078_RS17365at 27.150 kb on - strand, within HMPREF1078_RS17365at 27.213 kb on - strand, within HMPREF1078_RS17365at 27.233 kb on + strand, within HMPREF1078_RS17365at 27.234 kb on - strand, within HMPREF1078_RS17365at 27.248 kb on + strand, within HMPREF1078_RS17365at 27.248 kb on + strand, within HMPREF1078_RS17365at 27.248 kb on + strand, within HMPREF1078_RS17365at 27.249 kb on - strand, within HMPREF1078_RS17365at 27.309 kb on - strand, within HMPREF1078_RS17365at 27.494 kb on - strandat 27.494 kb on - strandat 27.511 kb on + strandat 27.512 kb on - strandat 27.519 kb on + strandat 27.537 kb on + strandat 27.538 kb on - strandat 27.538 kb on - strandat 27.559 kb on + strandat 27.572 kb on + strandat 27.573 kb on - strandat 27.712 kb on - strand, within HMPREF1078_RS17370at 27.856 kb on + strand, within HMPREF1078_RS17370at 27.857 kb on - strand, within HMPREF1078_RS17370at 27.911 kb on + strand, within HMPREF1078_RS17370at 28.046 kb on + strand, within HMPREF1078_RS17370at 28.047 kb on - strand, within HMPREF1078_RS17370at 28.050 kb on + strand, within HMPREF1078_RS17370at 28.050 kb on + strand, within HMPREF1078_RS17370at 28.050 kb on + strand, within HMPREF1078_RS17370at 28.051 kb on - strand, within HMPREF1078_RS17370at 28.051 kb on - strand, within HMPREF1078_RS17370at 28.051 kb on - strand, within HMPREF1078_RS17370at 28.161 kb on - strand, within HMPREF1078_RS17370at 28.209 kb on + strand, within HMPREF1078_RS17370at 28.209 kb on + strand, within HMPREF1078_RS17370at 28.209 kb on + strand, within HMPREF1078_RS17370at 28.210 kb on - strand, within HMPREF1078_RS17370at 28.211 kb on + strand, within HMPREF1078_RS17370at 28.211 kb on + strand, within HMPREF1078_RS17370at 28.212 kb on - strand, within HMPREF1078_RS17370at 28.212 kb on - strand, within HMPREF1078_RS17370at 28.212 kb on - strand, within HMPREF1078_RS17370at 28.212 kb on - strand, within HMPREF1078_RS17370at 28.212 kb on - strand, within HMPREF1078_RS17370at 28.212 kb on - strand, within HMPREF1078_RS17370at 28.212 kb on - strand, within HMPREF1078_RS17370at 28.212 kb on - strand, within HMPREF1078_RS17370at 28.419 kb on - strand, within HMPREF1078_RS17370at 28.463 kb on + strand, within HMPREF1078_RS17370at 28.463 kb on + strand, within HMPREF1078_RS17370at 28.464 kb on - strand, within HMPREF1078_RS17370at 28.464 kb on - strand, within HMPREF1078_RS17370at 28.614 kb on - strandat 28.624 kb on - strandat 28.630 kb on + strandat 28.633 kb on + strandat 28.634 kb on - strandat 28.638 kb on - strandat 28.738 kb on - strandat 28.746 kb on + strandat 28.747 kb on - strandat 28.756 kb on + strandat 28.756 kb on + strandat 28.761 kb on - strandat 28.761 kb on - strandat 28.790 kb on + strandat 28.803 kb on - strandat 28.803 kb on - strandat 28.803 kb on - strandat 28.806 kb on + strandat 28.807 kb on - strandat 28.807 kb on - strandat 28.865 kb on + strandat 28.870 kb on + strandat 28.870 kb on + strandat 28.870 kb on + strandat 28.871 kb on - strandat 28.942 kb on - strandat 28.983 kb on - strand, within HMPREF1078_RS17375at 29.044 kb on + strand, within HMPREF1078_RS17375at 29.127 kb on + strand, within HMPREF1078_RS17375at 29.168 kb on + strand, within HMPREF1078_RS17375at 29.168 kb on + strand, within HMPREF1078_RS17375at 29.188 kb on + strand, within HMPREF1078_RS17375at 29.188 kb on + strand, within HMPREF1078_RS17375at 29.342 kb on - strand, within HMPREF1078_RS17375at 29.342 kb on - strand, within HMPREF1078_RS17375at 29.375 kb on + strand, within HMPREF1078_RS17375at 29.400 kb on + strand, within HMPREF1078_RS17375at 29.400 kb on + strand, within HMPREF1078_RS17375at 29.400 kb on + strand, within HMPREF1078_RS17375at 29.401 kb on - strand, within HMPREF1078_RS17375at 29.401 kb on - strand, within HMPREF1078_RS17375at 29.458 kb on + strand, within HMPREF1078_RS17375at 29.459 kb on - strand, within HMPREF1078_RS17375at 29.549 kb on - strand, within HMPREF1078_RS17375

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mg/mL (C)
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26,595 + -2.6
26,612 - -1.5
26,612 - -0.5
26,622 + +0.3
26,645 - -1.1
26,671 + -1.8
26,671 + -0.4
26,671 + -1.4
26,672 - -1.9
26,776 - +0.0
26,776 - -1.1
26,840 + +0.3
26,841 - -0.4
26,841 - -1.9
26,861 + HMPREF1078_RS17365 0.10 -0.4
26,862 - HMPREF1078_RS17365 0.10 +2.3
26,862 - HMPREF1078_RS17365 0.10 -1.9
26,917 + HMPREF1078_RS17365 0.18 -2.3
26,936 - HMPREF1078_RS17365 0.21 +0.7
26,936 - HMPREF1078_RS17365 0.21 -1.5
27,035 + HMPREF1078_RS17365 0.35 -0.4
27,036 - HMPREF1078_RS17365 0.35 +1.6
27,054 + HMPREF1078_RS17365 0.37 +1.4
27,057 - HMPREF1078_RS17365 0.38 +0.2
27,092 + HMPREF1078_RS17365 0.43 +0.4
27,141 + HMPREF1078_RS17365 0.49 -2.0
27,142 - HMPREF1078_RS17365 0.50 -0.2
27,142 - HMPREF1078_RS17365 0.50 -0.2
27,150 - HMPREF1078_RS17365 0.51 -1.3
27,213 - HMPREF1078_RS17365 0.60 -0.7
27,233 + HMPREF1078_RS17365 0.62 +1.0
27,234 - HMPREF1078_RS17365 0.62 -1.4
27,248 + HMPREF1078_RS17365 0.64 -1.3
27,248 + HMPREF1078_RS17365 0.64 -0.2
27,248 + HMPREF1078_RS17365 0.64 +0.3
27,249 - HMPREF1078_RS17365 0.65 -1.5
27,309 - HMPREF1078_RS17365 0.73 -0.9
27,494 - +1.1
27,494 - +0.1
27,511 + -4.3
27,512 - -4.4
27,519 + +1.0
27,537 + +0.9
27,538 - +0.3
27,538 - +1.2
27,559 + -0.8
27,572 + -2.5
27,573 - +0.7
27,712 - HMPREF1078_RS17370 0.16 -0.0
27,856 + HMPREF1078_RS17370 0.30 -0.9
27,857 - HMPREF1078_RS17370 0.30 -1.9
27,911 + HMPREF1078_RS17370 0.35 -3.6
28,046 + HMPREF1078_RS17370 0.48 +0.5
28,047 - HMPREF1078_RS17370 0.48 -1.2
28,050 + HMPREF1078_RS17370 0.48 -3.2
28,050 + HMPREF1078_RS17370 0.48 -1.4
28,050 + HMPREF1078_RS17370 0.48 -0.5
28,051 - HMPREF1078_RS17370 0.48 -1.0
28,051 - HMPREF1078_RS17370 0.48 +0.9
28,051 - HMPREF1078_RS17370 0.48 -1.0
28,161 - HMPREF1078_RS17370 0.59 -0.4
28,209 + HMPREF1078_RS17370 0.63 -1.7
28,209 + HMPREF1078_RS17370 0.63 -0.1
28,209 + HMPREF1078_RS17370 0.63 -1.9
28,210 - HMPREF1078_RS17370 0.63 +0.5
28,211 + HMPREF1078_RS17370 0.64 -2.8
28,211 + HMPREF1078_RS17370 0.64 -1.1
28,212 - HMPREF1078_RS17370 0.64 -1.4
28,212 - HMPREF1078_RS17370 0.64 -1.1
28,212 - HMPREF1078_RS17370 0.64 -2.1
28,212 - HMPREF1078_RS17370 0.64 +1.0
28,212 - HMPREF1078_RS17370 0.64 +0.9
28,212 - HMPREF1078_RS17370 0.64 -0.5
28,212 - HMPREF1078_RS17370 0.64 +0.1
28,212 - HMPREF1078_RS17370 0.64 -2.0
28,419 - HMPREF1078_RS17370 0.83 -0.9
28,463 + HMPREF1078_RS17370 0.88 -1.1
28,463 + HMPREF1078_RS17370 0.88 -2.5
28,464 - HMPREF1078_RS17370 0.88 -2.3
28,464 - HMPREF1078_RS17370 0.88 -3.0
28,614 - -0.3
28,624 - -1.2
28,630 + -2.7
28,633 + -1.0
28,634 - +1.1
28,638 - +0.0
28,738 - -0.2
28,746 + +0.8
28,747 - -0.7
28,756 + -0.5
28,756 + -0.3
28,761 - +1.3
28,761 - +0.8
28,790 + +1.6
28,803 - +1.8
28,803 - -0.8
28,803 - +0.5
28,806 + +2.0
28,807 - +0.4
28,807 - -2.4
28,865 + +1.2
28,870 + -0.7
28,870 + -1.8
28,870 + +1.0
28,871 - +0.1
28,942 - -0.5
28,983 - HMPREF1078_RS17375 0.10 +0.6
29,044 + HMPREF1078_RS17375 0.15 -1.9
29,127 + HMPREF1078_RS17375 0.22 -2.3
29,168 + HMPREF1078_RS17375 0.25 +0.3
29,168 + HMPREF1078_RS17375 0.25 +1.6
29,188 + HMPREF1078_RS17375 0.27 -0.8
29,188 + HMPREF1078_RS17375 0.27 +0.2
29,342 - HMPREF1078_RS17375 0.40 -1.6
29,342 - HMPREF1078_RS17375 0.40 +1.3
29,375 + HMPREF1078_RS17375 0.42 +0.2
29,400 + HMPREF1078_RS17375 0.44 +0.2
29,400 + HMPREF1078_RS17375 0.44 -1.8
29,400 + HMPREF1078_RS17375 0.44 -0.7
29,401 - HMPREF1078_RS17375 0.44 +1.2
29,401 - HMPREF1078_RS17375 0.44 -0.8
29,458 + HMPREF1078_RS17375 0.49 +0.0
29,459 - HMPREF1078_RS17375 0.49 +2.6
29,549 - HMPREF1078_RS17375 0.57 +0.1

Or see this region's nucleotide sequence