Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10645

Experiment: Sucrose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sucrose 10 mg/mL (C)
30,836	+		HMPREF1078_RS10635	0.19	+2.0
30,837	-		HMPREF1078_RS10635	0.19	+1.1
30,874	+		HMPREF1078_RS10635	0.39	+0.9
30,934	+		HMPREF1078_RS10635	0.70	+1.6
30,939	-		HMPREF1078_RS10635	0.73	+0.3
30,988	-				+0.3
31,001	-				+0.2
31,002	+				-0.4
31,003	-				+2.0
31,081	+				+0.4
31,081	+				-0.2
31,101	+				+2.1
31,102	-				+0.6
31,103	+				-0.2
31,103	+				-0.4
31,103	+				+0.2
31,167	+				-1.2
31,178	-				-0.2
31,209	+				-1.6
31,237	+				-1.3
31,266	-				-3.2
31,341	+		HMPREF1078_RS10640	0.16	+1.2
31,360	+		HMPREF1078_RS10640	0.19	+0.5
31,361	-		HMPREF1078_RS10640	0.20	-0.8
31,362	+		HMPREF1078_RS10640	0.20	+0.2
31,362	+		HMPREF1078_RS10640	0.20	+0.6
31,363	-		HMPREF1078_RS10640	0.20	-3.1
31,363	-		HMPREF1078_RS10640	0.20	-0.5
31,363	-		HMPREF1078_RS10640	0.20	-2.0
31,385	+		HMPREF1078_RS10640	0.24	+2.8
31,403	+		HMPREF1078_RS10640	0.27	+1.1
31,404	-		HMPREF1078_RS10640	0.27	-3.0
31,404	-		HMPREF1078_RS10640	0.27	-3.0
31,404	-		HMPREF1078_RS10640	0.27	-2.6
31,406	+		HMPREF1078_RS10640	0.28	+1.9
31,407	-		HMPREF1078_RS10640	0.28	-2.5
31,427	-		HMPREF1078_RS10640	0.32	-3.1
31,449	+		HMPREF1078_RS10640	0.35	-1.2
31,450	-		HMPREF1078_RS10640	0.36	-2.4
31,507	-		HMPREF1078_RS10640	0.46	-1.5
31,524	+		HMPREF1078_RS10640	0.49	-0.2
31,531	+		HMPREF1078_RS10640	0.50	+1.4
31,537	+		HMPREF1078_RS10640	0.51	-0.0
31,624	+		HMPREF1078_RS10640	0.67	+0.8
31,651	+		HMPREF1078_RS10640	0.72	+1.0
31,651	+		HMPREF1078_RS10640	0.72	-1.1
31,652	-		HMPREF1078_RS10640	0.72	-0.8
31,653	+		HMPREF1078_RS10640	0.72	-0.8
31,653	+		HMPREF1078_RS10640	0.72	-0.7
31,653	+		HMPREF1078_RS10640	0.72	-2.8
31,653	+		HMPREF1078_RS10640	0.72	-0.2
31,653	+		HMPREF1078_RS10640	0.72	-2.1
31,656	+		HMPREF1078_RS10640	0.73	+0.1
31,656	+		HMPREF1078_RS10640	0.73	+0.2
31,657	-		HMPREF1078_RS10640	0.73	-2.0
31,657	-		HMPREF1078_RS10640	0.73	-2.5
31,657	-		HMPREF1078_RS10640	0.73	-1.5
31,657	-		HMPREF1078_RS10640	0.73	-3.1
31,657	-		HMPREF1078_RS10640	0.73	-4.1
31,657	-		HMPREF1078_RS10640	0.73	-0.1
31,662	-		HMPREF1078_RS10640	0.74	-2.4
31,725	+		HMPREF1078_RS10640	0.85	-1.6
31,725	+		HMPREF1078_RS10640	0.85	-1.3
31,726	-		HMPREF1078_RS10640	0.85	-2.4
31,729	+		HMPREF1078_RS10640	0.86	-0.5
31,730	-		HMPREF1078_RS10640	0.86	-3.5
31,730	-		HMPREF1078_RS10640	0.86	-2.5
31,796	+				+1.2
31,818	-				-0.3
31,841	+				-4.5
31,931	+				+0.1
31,932	-				-2.4
31,932	-				-4.6
32,000	+		HMPREF1078_RS10645	0.10	-4.0
32,082	+		HMPREF1078_RS10645	0.15	-4.3
32,083	-		HMPREF1078_RS10645	0.15	-4.0
32,083	-		HMPREF1078_RS10645	0.15	-2.3
32,142	+		HMPREF1078_RS10645	0.19	-4.5
32,143	-		HMPREF1078_RS10645	0.19	-3.4
32,194	-		HMPREF1078_RS10645	0.22	-1.9
32,266	-		HMPREF1078_RS10645	0.26	-2.0
32,266	-		HMPREF1078_RS10645	0.26	-0.8
32,266	-		HMPREF1078_RS10645	0.26	-2.7
32,298	-		HMPREF1078_RS10645	0.28	-3.4
32,381	+		HMPREF1078_RS10645	0.33	-3.2
32,381	+		HMPREF1078_RS10645	0.33	-2.7
32,493	+		HMPREF1078_RS10645	0.40	-1.9
32,527	-		HMPREF1078_RS10645	0.42	-4.3
32,590	+		HMPREF1078_RS10645	0.46	-0.7
32,591	-		HMPREF1078_RS10645	0.46	-3.5
32,626	+		HMPREF1078_RS10645	0.48	-0.9
32,655	+		HMPREF1078_RS10645	0.50	-1.0
32,670	-		HMPREF1078_RS10645	0.51	-3.4
32,706	+		HMPREF1078_RS10645	0.53	-1.9
32,727	-		HMPREF1078_RS10645	0.54	-1.9
32,767	+		HMPREF1078_RS10645	0.56	+0.3
32,773	-		HMPREF1078_RS10645	0.57	-3.8
32,818	+		HMPREF1078_RS10645	0.59	+0.7
32,938	+		HMPREF1078_RS10645	0.67	+0.9
33,013	-		HMPREF1078_RS10645	0.71	-2.4
33,050	-		HMPREF1078_RS10645	0.73	-4.4
33,203	+		HMPREF1078_RS10645	0.82	+2.2
33,314	-		HMPREF1078_RS10645	0.89	+0.7
33,410	+				-0.3
33,444	-				-0.7
33,546	+				-3.6
33,628	-		HMPREF1078_RS10650	0.14	-0.1
33,628	-		HMPREF1078_RS10650	0.14	-1.7
33,694	-		HMPREF1078_RS10650	0.20	-4.0
33,737	+		HMPREF1078_RS10650	0.23	+0.4
33,737	+		HMPREF1078_RS10650	0.23	-2.4
33,855	-		HMPREF1078_RS10650	0.34	-2.2
33,875	-		HMPREF1078_RS10650	0.36	+0.9
33,875	-		HMPREF1078_RS10650	0.36	-2.2
33,882	+		HMPREF1078_RS10650	0.36	-3.5
33,882	+		HMPREF1078_RS10650	0.36	-1.1
33,883	-		HMPREF1078_RS10650	0.36	-3.4
33,883	-		HMPREF1078_RS10650	0.36	-3.7
33,895	+		HMPREF1078_RS10650	0.38	-2.4
34,035	+		HMPREF1078_RS10650	0.50	-2.1
34,039	+		HMPREF1078_RS10650	0.50	-3.5
34,112	+		HMPREF1078_RS10650	0.57	-3.0
34,113	-		HMPREF1078_RS10650	0.57	-1.8
34,113	-		HMPREF1078_RS10650	0.57	-1.1
34,113	-		HMPREF1078_RS10650	0.57	-0.2
34,156	+		HMPREF1078_RS10650	0.61	-2.9
34,356	+		HMPREF1078_RS10650	0.78	-1.1
34,357	-		HMPREF1078_RS10650	0.79	-1.7
34,357	-		HMPREF1078_RS10650	0.79	-1.8
34,389	+		HMPREF1078_RS10650	0.81	-3.0
34,390	-		HMPREF1078_RS10650	0.82	-3.0