Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS08035

Experiment: Sucrose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS08030 and HMPREF1078_RS08035 are separated by 179 nucleotidesHMPREF1078_RS08035 and HMPREF1078_RS08040 are separated by 268 nucleotides HMPREF1078_RS08030: HMPREF1078_RS08030 - MATE family efflux transporter, at 167,919 to 169,262 _RS08030 HMPREF1078_RS08035: HMPREF1078_RS08035 - magnesium transporter CorA family protein, at 169,442 to 170,368 _RS08035 HMPREF1078_RS08040: HMPREF1078_RS08040 - winged helix DNA-binding domain-containing protein, at 170,637 to 171,707 _RS08040 Position (kb) 169 170 171Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 168.545 kb on + strand, within HMPREF1078_RS08030at 168.555 kb on + strand, within HMPREF1078_RS08030at 168.557 kb on + strand, within HMPREF1078_RS08030at 168.557 kb on + strand, within HMPREF1078_RS08030at 168.557 kb on + strand, within HMPREF1078_RS08030at 168.557 kb on + strand, within HMPREF1078_RS08030at 168.558 kb on - strand, within HMPREF1078_RS08030at 168.558 kb on - strand, within HMPREF1078_RS08030at 168.558 kb on - strand, within HMPREF1078_RS08030at 168.558 kb on - strand, within HMPREF1078_RS08030at 168.581 kb on - strand, within HMPREF1078_RS08030at 168.710 kb on + strand, within HMPREF1078_RS08030at 168.773 kb on + strand, within HMPREF1078_RS08030at 168.880 kb on + strand, within HMPREF1078_RS08030at 168.944 kb on + strand, within HMPREF1078_RS08030at 168.945 kb on - strand, within HMPREF1078_RS08030at 169.048 kb on - strand, within HMPREF1078_RS08030at 169.071 kb on - strand, within HMPREF1078_RS08030at 169.113 kb on - strand, within HMPREF1078_RS08030at 169.132 kb on - strandat 169.242 kb on + strandat 169.242 kb on + strandat 169.280 kb on + strandat 169.283 kb on - strandat 169.288 kb on + strandat 169.372 kb on - strandat 169.376 kb on - strandat 169.376 kb on - strandat 169.395 kb on + strandat 169.413 kb on + strandat 169.413 kb on + strandat 169.413 kb on + strandat 169.414 kb on - strandat 169.440 kb on + strandat 169.440 kb on + strandat 169.457 kb on + strandat 169.515 kb on + strandat 169.516 kb on - strandat 169.538 kb on - strand, within HMPREF1078_RS08035at 169.622 kb on + strand, within HMPREF1078_RS08035at 169.623 kb on - strand, within HMPREF1078_RS08035at 169.711 kb on + strand, within HMPREF1078_RS08035at 169.711 kb on + strand, within HMPREF1078_RS08035at 169.734 kb on + strand, within HMPREF1078_RS08035at 169.734 kb on + strand, within HMPREF1078_RS08035at 169.734 kb on + strand, within HMPREF1078_RS08035at 169.734 kb on + strand, within HMPREF1078_RS08035at 169.734 kb on + strand, within HMPREF1078_RS08035at 169.734 kb on + strand, within HMPREF1078_RS08035at 169.734 kb on + strand, within HMPREF1078_RS08035at 169.735 kb on - strand, within HMPREF1078_RS08035at 169.735 kb on - strand, within HMPREF1078_RS08035at 169.735 kb on - strand, within HMPREF1078_RS08035at 169.749 kb on - strand, within HMPREF1078_RS08035at 169.817 kb on + strand, within HMPREF1078_RS08035at 169.817 kb on + strand, within HMPREF1078_RS08035at 169.817 kb on + strand, within HMPREF1078_RS08035at 169.999 kb on + strand, within HMPREF1078_RS08035at 170.048 kb on + strand, within HMPREF1078_RS08035at 170.051 kb on - strand, within HMPREF1078_RS08035at 170.088 kb on + strand, within HMPREF1078_RS08035at 170.088 kb on + strand, within HMPREF1078_RS08035at 170.117 kb on + strand, within HMPREF1078_RS08035at 170.117 kb on + strand, within HMPREF1078_RS08035at 170.118 kb on - strand, within HMPREF1078_RS08035at 170.118 kb on - strand, within HMPREF1078_RS08035at 170.246 kb on + strand, within HMPREF1078_RS08035at 170.246 kb on + strand, within HMPREF1078_RS08035at 170.247 kb on - strand, within HMPREF1078_RS08035at 170.247 kb on - strand, within HMPREF1078_RS08035at 170.251 kb on + strand, within HMPREF1078_RS08035at 170.268 kb on - strand, within HMPREF1078_RS08035at 170.322 kb on + strandat 170.322 kb on + strandat 170.322 kb on + strandat 170.372 kb on - strandat 170.437 kb on - strandat 170.437 kb on - strandat 170.437 kb on - strandat 170.440 kb on + strandat 170.468 kb on + strandat 170.468 kb on + strandat 170.469 kb on - strandat 170.471 kb on + strandat 170.471 kb on + strandat 170.472 kb on - strandat 170.472 kb on - strandat 170.472 kb on - strandat 170.489 kb on - strandat 170.493 kb on - strandat 170.513 kb on + strandat 170.528 kb on - strandat 170.550 kb on + strandat 170.569 kb on + strandat 170.574 kb on - strandat 170.574 kb on - strandat 170.575 kb on + strandat 170.577 kb on - strandat 170.579 kb on + strandat 170.579 kb on - strandat 170.623 kb on + strandat 170.803 kb on + strand, within HMPREF1078_RS08040at 170.804 kb on - strand, within HMPREF1078_RS08040at 170.835 kb on - strand, within HMPREF1078_RS08040at 170.835 kb on - strand, within HMPREF1078_RS08040at 170.835 kb on - strand, within HMPREF1078_RS08040at 170.887 kb on + strand, within HMPREF1078_RS08040at 170.888 kb on - strand, within HMPREF1078_RS08040at 170.888 kb on - strand, within HMPREF1078_RS08040at 170.899 kb on + strand, within HMPREF1078_RS08040at 170.900 kb on - strand, within HMPREF1078_RS08040at 170.908 kb on + strand, within HMPREF1078_RS08040at 170.909 kb on - strand, within HMPREF1078_RS08040at 170.972 kb on - strand, within HMPREF1078_RS08040at 171.081 kb on - strand, within HMPREF1078_RS08040at 171.108 kb on + strand, within HMPREF1078_RS08040at 171.184 kb on + strand, within HMPREF1078_RS08040at 171.184 kb on + strand, within HMPREF1078_RS08040at 171.185 kb on - strand, within HMPREF1078_RS08040at 171.185 kb on - strand, within HMPREF1078_RS08040at 171.185 kb on - strand, within HMPREF1078_RS08040at 171.204 kb on - strand, within HMPREF1078_RS08040at 171.204 kb on - strand, within HMPREF1078_RS08040at 171.208 kb on - strand, within HMPREF1078_RS08040at 171.253 kb on + strand, within HMPREF1078_RS08040at 171.254 kb on - strand, within HMPREF1078_RS08040at 171.259 kb on - strand, within HMPREF1078_RS08040at 171.359 kb on + strand, within HMPREF1078_RS08040at 171.360 kb on - strand, within HMPREF1078_RS08040

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mg/mL (C)
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168,545 + HMPREF1078_RS08030 0.47 +0.7
168,555 + HMPREF1078_RS08030 0.47 +0.1
168,557 + HMPREF1078_RS08030 0.47 -1.2
168,557 + HMPREF1078_RS08030 0.47 +0.0
168,557 + HMPREF1078_RS08030 0.47 -0.4
168,557 + HMPREF1078_RS08030 0.47 +0.7
168,558 - HMPREF1078_RS08030 0.48 -0.7
168,558 - HMPREF1078_RS08030 0.48 +0.6
168,558 - HMPREF1078_RS08030 0.48 -2.1
168,558 - HMPREF1078_RS08030 0.48 +0.3
168,581 - HMPREF1078_RS08030 0.49 -1.7
168,710 + HMPREF1078_RS08030 0.59 -3.8
168,773 + HMPREF1078_RS08030 0.64 +2.2
168,880 + HMPREF1078_RS08030 0.72 +0.3
168,944 + HMPREF1078_RS08030 0.76 -1.8
168,945 - HMPREF1078_RS08030 0.76 +0.9
169,048 - HMPREF1078_RS08030 0.84 +0.1
169,071 - HMPREF1078_RS08030 0.86 -1.4
169,113 - HMPREF1078_RS08030 0.89 -0.7
169,132 - +2.5
169,242 + +0.3
169,242 + -0.6
169,280 + +0.9
169,283 - -1.6
169,288 + -0.6
169,372 - -1.7
169,376 - -1.5
169,376 - -2.4
169,395 + -2.4
169,413 + +0.4
169,413 + -1.5
169,413 + -0.4
169,414 - -0.5
169,440 + -1.1
169,440 + -3.0
169,457 + -3.0
169,515 + -1.5
169,516 - -3.4
169,538 - HMPREF1078_RS08035 0.10 -2.4
169,622 + HMPREF1078_RS08035 0.19 +0.5
169,623 - HMPREF1078_RS08035 0.20 -1.1
169,711 + HMPREF1078_RS08035 0.29 -3.1
169,711 + HMPREF1078_RS08035 0.29 -2.2
169,734 + HMPREF1078_RS08035 0.31 -0.1
169,734 + HMPREF1078_RS08035 0.31 -1.3
169,734 + HMPREF1078_RS08035 0.31 -1.8
169,734 + HMPREF1078_RS08035 0.31 -2.5
169,734 + HMPREF1078_RS08035 0.31 -2.6
169,734 + HMPREF1078_RS08035 0.31 -4.0
169,734 + HMPREF1078_RS08035 0.31 -1.2
169,735 - HMPREF1078_RS08035 0.32 -0.7
169,735 - HMPREF1078_RS08035 0.32 -2.7
169,735 - HMPREF1078_RS08035 0.32 -3.8
169,749 - HMPREF1078_RS08035 0.33 +2.7
169,817 + HMPREF1078_RS08035 0.40 -2.1
169,817 + HMPREF1078_RS08035 0.40 -1.3
169,817 + HMPREF1078_RS08035 0.40 -0.1
169,999 + HMPREF1078_RS08035 0.60 +0.3
170,048 + HMPREF1078_RS08035 0.65 -0.7
170,051 - HMPREF1078_RS08035 0.66 +0.1
170,088 + HMPREF1078_RS08035 0.70 -3.8
170,088 + HMPREF1078_RS08035 0.70 -4.0
170,117 + HMPREF1078_RS08035 0.73 -0.1
170,117 + HMPREF1078_RS08035 0.73 -2.9
170,118 - HMPREF1078_RS08035 0.73 -3.0
170,118 - HMPREF1078_RS08035 0.73 -3.5
170,246 + HMPREF1078_RS08035 0.87 -1.5
170,246 + HMPREF1078_RS08035 0.87 -3.8
170,247 - HMPREF1078_RS08035 0.87 -4.6
170,247 - HMPREF1078_RS08035 0.87 +0.3
170,251 + HMPREF1078_RS08035 0.87 -0.1
170,268 - HMPREF1078_RS08035 0.89 -1.7
170,322 + -0.8
170,322 + -2.3
170,322 + -2.0
170,372 - -0.6
170,437 - -1.5
170,437 - -2.1
170,437 - -1.8
170,440 + +0.1
170,468 + +0.5
170,468 + -0.3
170,469 - -1.0
170,471 + -1.0
170,471 + +1.4
170,472 - -0.4
170,472 - -1.1
170,472 - +0.6
170,489 - -0.9
170,493 - -0.8
170,513 + -0.1
170,528 - -1.4
170,550 + -1.2
170,569 + +1.5
170,574 - +1.4
170,574 - +0.5
170,575 + +0.9
170,577 - -0.6
170,579 + +0.8
170,579 - -2.9
170,623 + -0.8
170,803 + HMPREF1078_RS08040 0.15 +1.5
170,804 - HMPREF1078_RS08040 0.16 -0.1
170,835 - HMPREF1078_RS08040 0.18 -0.9
170,835 - HMPREF1078_RS08040 0.18 -1.0
170,835 - HMPREF1078_RS08040 0.18 +0.5
170,887 + HMPREF1078_RS08040 0.23 -0.2
170,888 - HMPREF1078_RS08040 0.23 -1.9
170,888 - HMPREF1078_RS08040 0.23 -0.5
170,899 + HMPREF1078_RS08040 0.24 +0.2
170,900 - HMPREF1078_RS08040 0.25 +0.0
170,908 + HMPREF1078_RS08040 0.25 -0.9
170,909 - HMPREF1078_RS08040 0.25 +0.8
170,972 - HMPREF1078_RS08040 0.31 +0.6
171,081 - HMPREF1078_RS08040 0.41 -0.8
171,108 + HMPREF1078_RS08040 0.44 -1.5
171,184 + HMPREF1078_RS08040 0.51 +1.9
171,184 + HMPREF1078_RS08040 0.51 +1.4
171,185 - HMPREF1078_RS08040 0.51 +1.6
171,185 - HMPREF1078_RS08040 0.51 -0.3
171,185 - HMPREF1078_RS08040 0.51 +0.6
171,204 - HMPREF1078_RS08040 0.53 +1.1
171,204 - HMPREF1078_RS08040 0.53 +0.8
171,208 - HMPREF1078_RS08040 0.53 -0.5
171,253 + HMPREF1078_RS08040 0.58 -0.6
171,254 - HMPREF1078_RS08040 0.58 +0.3
171,259 - HMPREF1078_RS08040 0.58 +0.1
171,359 + HMPREF1078_RS08040 0.67 -0.9
171,360 - HMPREF1078_RS08040 0.68 -1.8

Or see this region's nucleotide sequence