Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS07720

Experiment: Sucrose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sucrose 10 mg/mL (C)
85,493	+				+1.1
85,493	+				+1.3
85,494	-				-1.1
85,535	+				+3.7
85,535	+				-2.3
85,551	+				-0.2
85,580	+				+0.1
85,581	-				-0.8
85,581	-				+0.8
85,677	+				+1.9
85,677	+				-1.3
85,679	+				-0.0
85,682	-				+0.8
85,682	-				-0.6
85,684	+				+0.6
85,688	+				+0.2
85,693	+				-1.0
85,694	-				+0.8
85,694	-				+1.9
85,742	+		HMPREF1078_RS07715	0.11	-2.8
85,742	+		HMPREF1078_RS07715	0.11	+0.7
85,742	+		HMPREF1078_RS07715	0.11	+1.5
85,783	+		HMPREF1078_RS07715	0.16	-0.1
85,783	+		HMPREF1078_RS07715	0.16	-0.4
85,787	+		HMPREF1078_RS07715	0.16	+2.1
85,787	+		HMPREF1078_RS07715	0.16	+0.1
85,844	-		HMPREF1078_RS07715	0.23	-0.9
85,968	-		HMPREF1078_RS07715	0.38	+0.7
85,986	-		HMPREF1078_RS07715	0.40	+2.8
86,002	+		HMPREF1078_RS07715	0.42	-0.7
86,008	+		HMPREF1078_RS07715	0.43	-1.1
86,008	+		HMPREF1078_RS07715	0.43	-0.5
86,012	-		HMPREF1078_RS07715	0.44	+0.6
86,030	-		HMPREF1078_RS07715	0.46	+1.6
86,043	+		HMPREF1078_RS07715	0.47	-0.6
86,054	+		HMPREF1078_RS07715	0.49	+0.8
86,115	-		HMPREF1078_RS07715	0.56	-0.2
86,138	+		HMPREF1078_RS07715	0.59	+0.8
86,199	+		HMPREF1078_RS07715	0.66	+0.1
86,199	+		HMPREF1078_RS07715	0.66	+0.7
86,202	+		HMPREF1078_RS07715	0.67	+1.1
86,221	+		HMPREF1078_RS07715	0.69	+1.4
86,221	+		HMPREF1078_RS07715	0.69	-0.7
86,222	-		HMPREF1078_RS07715	0.69	-0.1
86,241	+		HMPREF1078_RS07715	0.71	+1.8
86,243	+		HMPREF1078_RS07715	0.72	-1.0
86,244	-		HMPREF1078_RS07715	0.72	+3.1
86,244	-		HMPREF1078_RS07715	0.72	-0.0
86,266	-		HMPREF1078_RS07715	0.74	+3.0
86,267	+		HMPREF1078_RS07715	0.74	-0.9
86,268	-		HMPREF1078_RS07715	0.75	-2.0
86,297	+		HMPREF1078_RS07715	0.78	-0.5
86,297	+		HMPREF1078_RS07715	0.78	+0.8
86,302	+		HMPREF1078_RS07715	0.79	-0.7
86,302	+		HMPREF1078_RS07715	0.79	+0.1
86,302	+		HMPREF1078_RS07715	0.79	+3.5
86,302	+		HMPREF1078_RS07715	0.79	-0.1
86,303	-		HMPREF1078_RS07715	0.79	+1.5
86,303	-		HMPREF1078_RS07715	0.79	-0.7
86,303	-		HMPREF1078_RS07715	0.79	-0.7
86,303	-		HMPREF1078_RS07715	0.79	+0.1
86,307	-		HMPREF1078_RS07715	0.79	-0.6
86,309	-		HMPREF1078_RS07715	0.80	+2.4
86,309	-		HMPREF1078_RS07715	0.80	+2.4
86,320	-		HMPREF1078_RS07715	0.81	-0.6
86,320	-		HMPREF1078_RS07715	0.81	+1.3
86,349	+		HMPREF1078_RS07715	0.84	+0.7
86,395	-				-2.0
86,404	-				-0.8
86,404	-				+3.4
86,405	+				-0.3
86,405	+				+0.6
86,405	+				+0.6
86,421	+				-0.5
86,421	+				-0.2
86,422	-				+0.4
86,423	+				+0.2
86,428	-				-0.5
86,435	-				+0.7
86,446	+				-2.1
86,488	+				-1.5
86,530	+				+0.8
86,531	-				-0.3
86,531	-				-0.5
86,550	+				+1.8
86,550	+				+1.1
86,553	+				-0.1
86,553	+				+0.1
86,554	-				-1.5
86,555	+				+1.3
86,593	+		HMPREF1078_RS07720	0.11	+6.1
86,594	-		HMPREF1078_RS07720	0.11	+0.7
86,594	-		HMPREF1078_RS07720	0.11	+2.1
86,594	-		HMPREF1078_RS07720	0.11	+1.4
86,594	-		HMPREF1078_RS07720	0.11	+1.5
86,595	+		HMPREF1078_RS07720	0.11	-0.1
86,595	+		HMPREF1078_RS07720	0.11	-2.0
86,595	+		HMPREF1078_RS07720	0.11	-1.6
86,595	+		HMPREF1078_RS07720	0.11	+0.3
86,596	-		HMPREF1078_RS07720	0.12	-1.5
86,596	-		HMPREF1078_RS07720	0.12	+0.5
86,596	-		HMPREF1078_RS07720	0.12	-1.5
86,601	+		HMPREF1078_RS07720	0.12	-1.8
86,601	+		HMPREF1078_RS07720	0.12	-2.7
86,619	-		HMPREF1078_RS07720	0.14	+2.5
86,629	-		HMPREF1078_RS07720	0.14	+1.0
86,690	-		HMPREF1078_RS07720	0.20	-0.1
86,742	-		HMPREF1078_RS07720	0.24	+2.2
86,748	+		HMPREF1078_RS07720	0.25	-1.3
86,749	-		HMPREF1078_RS07720	0.25	-0.4
86,796	-		HMPREF1078_RS07720	0.29	+0.1
86,801	+		HMPREF1078_RS07720	0.29	+0.3
86,890	-		HMPREF1078_RS07720	0.37	+0.9
86,911	+		HMPREF1078_RS07720	0.39	+0.3
86,912	-		HMPREF1078_RS07720	0.39	+0.3
86,912	-		HMPREF1078_RS07720	0.39	-2.0
86,915	+		HMPREF1078_RS07720	0.39	+1.9
86,924	-		HMPREF1078_RS07720	0.40	+0.0
86,944	-		HMPREF1078_RS07720	0.42	-0.8
86,971	-		HMPREF1078_RS07720	0.44	+2.4
86,986	+		HMPREF1078_RS07720	0.46	+1.5
86,987	-		HMPREF1078_RS07720	0.46	+1.7
86,987	-		HMPREF1078_RS07720	0.46	-1.6
86,997	+		HMPREF1078_RS07720	0.47	+0.5
86,997	+		HMPREF1078_RS07720	0.47	+0.8
86,997	+		HMPREF1078_RS07720	0.47	+0.9
86,998	-		HMPREF1078_RS07720	0.47	+1.3
87,011	-		HMPREF1078_RS07720	0.48	+1.5
87,030	+		HMPREF1078_RS07720	0.49	+0.7
87,031	-		HMPREF1078_RS07720	0.49	+1.4
87,100	+		HMPREF1078_RS07720	0.55	+0.5
87,100	+		HMPREF1078_RS07720	0.55	-1.6
87,100	+		HMPREF1078_RS07720	0.55	-1.1
87,101	-		HMPREF1078_RS07720	0.56	+0.5
87,101	-		HMPREF1078_RS07720	0.56	-0.8
87,101	-		HMPREF1078_RS07720	0.56	+1.1
87,101	-		HMPREF1078_RS07720	0.56	+0.7
87,101	-		HMPREF1078_RS07720	0.56	+1.3
87,101	-		HMPREF1078_RS07720	0.56	-0.4
87,101	-		HMPREF1078_RS07720	0.56	-1.3
87,123	+		HMPREF1078_RS07720	0.58	-0.3
87,124	-		HMPREF1078_RS07720	0.58	-1.7
87,129	+		HMPREF1078_RS07720	0.58	-2.0
87,129	+		HMPREF1078_RS07720	0.58	-0.1
87,129	+		HMPREF1078_RS07720	0.58	+0.7
87,129	+		HMPREF1078_RS07720	0.58	-0.4
87,130	-		HMPREF1078_RS07720	0.58	-1.3
87,131	+		HMPREF1078_RS07720	0.58	-0.8
87,132	-		HMPREF1078_RS07720	0.58	+1.2
87,164	+		HMPREF1078_RS07720	0.61	+1.0
87,164	+		HMPREF1078_RS07720	0.61	+0.6
87,164	+		HMPREF1078_RS07720	0.61	+0.2
87,164	+		HMPREF1078_RS07720	0.61	+0.5
87,165	-		HMPREF1078_RS07720	0.61	-0.1
87,181	+		HMPREF1078_RS07720	0.63	-0.4
87,187	+		HMPREF1078_RS07720	0.63	-0.4
87,197	+		HMPREF1078_RS07720	0.64	-1.4
87,205	+		HMPREF1078_RS07720	0.65	+1.5
87,213	-		HMPREF1078_RS07720	0.65	+0.8
87,220	+		HMPREF1078_RS07720	0.66	-0.5
87,221	-		HMPREF1078_RS07720	0.66	+1.8
87,234	+		HMPREF1078_RS07720	0.67	-0.5
87,235	-		HMPREF1078_RS07720	0.67	+0.1
87,237	-		HMPREF1078_RS07720	0.67	+1.1
87,270	-		HMPREF1078_RS07720	0.70	+1.3
87,288	+		HMPREF1078_RS07720	0.72	+2.0
87,312	+		HMPREF1078_RS07720	0.74	-0.7
87,312	+		HMPREF1078_RS07720	0.74	+1.1
87,332	+		HMPREF1078_RS07720	0.76	-0.3
87,388	+		HMPREF1078_RS07720	0.81	+1.4
87,398	-		HMPREF1078_RS07720	0.82	-0.7
87,426	+		HMPREF1078_RS07720	0.84	-1.8
87,471	+		HMPREF1078_RS07720	0.88	+2.7
87,472	-		HMPREF1078_RS07720	0.88	+0.1
87,474	+		HMPREF1078_RS07720	0.88	-1.7
87,484	-		HMPREF1078_RS07720	0.89	-0.4
87,505	+				-0.5
87,506	-				-0.1
87,518	-				+1.8
87,519	+				+0.4
87,578	-				-1.6
87,609	+				+0.5
87,612	+				+1.4
87,615	+				-1.0
87,619	-				-1.4
87,619	-				+0.3
87,620	+				+1.4
87,620	+				-0.7
87,620	+				-0.8
87,621	-				+1.2
87,621	-				+2.5
87,635	+				-0.4
87,650	+				-1.1
87,668	+				+0.5
87,668	+				-1.1
87,668	+				-0.2
87,669	-				+0.8
87,669	-				-0.5
87,669	-				-0.5
87,672	+				-2.7
87,673	-				-2.2
87,673	-				+1.4
87,676	-				+0.3
87,685	-				-0.3
87,688	+				+2.1
87,689	-				+1.1
87,689	-				-0.3
87,689	-				+0.8
87,697	+				+2.5
87,698	-				-0.5
87,709	-				+0.8
87,710	+				-0.1
87,710	+				+0.7
87,711	-				+0.9
87,737	-				-0.1
87,763	-				+0.6
87,765	-				-1.5
87,765	-				-0.7
87,792	-				-1.5
87,792	-				-0.7
87,866	-				-0.5
87,869	+				+2.0
87,898	+				+1.2
87,906	+				+2.1
87,907	-				-0.2
87,907	-				-2.1
87,921	+				+0.9
87,922	-				-1.8
87,933	+				+1.0
87,935	+				+1.0
87,955	+				+2.4
87,955	+				+1.4
87,965	+				+2.1
87,972	+				+2.8
87,973	-				-0.6
87,974	+				+1.5
88,006	+				-1.3
88,006	+				+1.5
88,007	-				-2.6
88,007	-				-2.1
88,008	+				-3.8
88,009	-				-1.4
88,053	+				-2.1
88,053	+				+0.1
88,057	+				-2.8
88,057	+				-1.7
88,057	+				+0.3
88,101	+				+0.5
88,101	+				-1.8
88,102	-				-3.2
88,231	+		HMPREF1078_RS07725	0.13	-3.2
88,274	+		HMPREF1078_RS07725	0.15	-1.1
88,274	+		HMPREF1078_RS07725	0.15	-1.6
88,275	-		HMPREF1078_RS07725	0.15	-1.4
88,275	-		HMPREF1078_RS07725	0.15	-0.1
88,310	+		HMPREF1078_RS07725	0.17	-3.3
88,310	+		HMPREF1078_RS07725	0.17	-1.2
88,311	-		HMPREF1078_RS07725	0.17	-1.7
88,311	-		HMPREF1078_RS07725	0.17	-2.9
88,349	+		HMPREF1078_RS07725	0.20	-0.6
88,349	+		HMPREF1078_RS07725	0.20	-1.5
88,350	-		HMPREF1078_RS07725	0.20	-0.4
88,352	-		HMPREF1078_RS07725	0.20	-1.3
88,376	+		HMPREF1078_RS07725	0.21	-1.7
88,388	+		HMPREF1078_RS07725	0.22	-2.1
88,388	+		HMPREF1078_RS07725	0.22	+0.3
88,403	+		HMPREF1078_RS07725	0.23	-3.7
88,475	+		HMPREF1078_RS07725	0.27	-1.5
88,502	-		HMPREF1078_RS07725	0.29	-3.4