Experiment: Sucrose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02490 and HMPREF1078_RS02495 are separated by 20 nucleotides HMPREF1078_RS02495 and HMPREF1078_RS02500 are separated by 13 nucleotides
HMPREF1078_RS02490: HMPREF1078_RS02490 - alpha-N-acetylglucosaminidase, at 614,758 to 617,016
_RS02490
HMPREF1078_RS02495: HMPREF1078_RS02495 - NPCBM/NEW2 domain-containing protein, at 617,037 to 619,853
_RS02495
HMPREF1078_RS02500: HMPREF1078_RS02500 - DUF6067 family protein, at 619,867 to 622,551
_RS02500
Position (kb) 617
618
619
620 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 616.077 kb on - strand, within HMPREF1078_RS02490 at 616.270 kb on + strand, within HMPREF1078_RS02490 at 616.304 kb on + strand, within HMPREF1078_RS02490 at 616.305 kb on - strand, within HMPREF1078_RS02490 at 616.365 kb on + strand, within HMPREF1078_RS02490 at 616.461 kb on + strand, within HMPREF1078_RS02490 at 616.718 kb on - strand, within HMPREF1078_RS02490 at 616.723 kb on - strand, within HMPREF1078_RS02490 at 616.920 kb on + strand at 616.951 kb on + strand at 616.952 kb on - strand at 616.953 kb on + strand at 616.989 kb on + strand at 617.015 kb on - strand at 617.032 kb on - strand at 617.033 kb on + strand at 617.036 kb on + strand at 617.036 kb on + strand at 617.037 kb on - strand at 617.110 kb on + strand at 617.111 kb on - strand at 617.322 kb on + strand, within HMPREF1078_RS02495 at 617.377 kb on - strand, within HMPREF1078_RS02495 at 617.404 kb on - strand, within HMPREF1078_RS02495 at 617.449 kb on + strand, within HMPREF1078_RS02495 at 617.449 kb on + strand, within HMPREF1078_RS02495 at 617.450 kb on - strand, within HMPREF1078_RS02495 at 617.628 kb on - strand, within HMPREF1078_RS02495 at 617.632 kb on - strand, within HMPREF1078_RS02495 at 617.694 kb on - strand, within HMPREF1078_RS02495 at 617.766 kb on - strand, within HMPREF1078_RS02495 at 617.840 kb on - strand, within HMPREF1078_RS02495 at 617.854 kb on + strand, within HMPREF1078_RS02495 at 617.927 kb on + strand, within HMPREF1078_RS02495 at 618.108 kb on - strand, within HMPREF1078_RS02495 at 618.181 kb on + strand, within HMPREF1078_RS02495 at 618.251 kb on + strand, within HMPREF1078_RS02495 at 618.252 kb on - strand, within HMPREF1078_RS02495 at 618.325 kb on + strand, within HMPREF1078_RS02495 at 618.326 kb on - strand, within HMPREF1078_RS02495 at 618.326 kb on - strand, within HMPREF1078_RS02495 at 618.326 kb on - strand, within HMPREF1078_RS02495 at 618.389 kb on + strand, within HMPREF1078_RS02495 at 618.392 kb on - strand, within HMPREF1078_RS02495 at 618.489 kb on - strand, within HMPREF1078_RS02495 at 618.492 kb on + strand, within HMPREF1078_RS02495 at 618.585 kb on - strand, within HMPREF1078_RS02495 at 618.632 kb on - strand, within HMPREF1078_RS02495 at 618.699 kb on - strand, within HMPREF1078_RS02495 at 618.714 kb on - strand, within HMPREF1078_RS02495 at 618.846 kb on + strand, within HMPREF1078_RS02495 at 618.847 kb on - strand, within HMPREF1078_RS02495 at 619.142 kb on + strand, within HMPREF1078_RS02495 at 619.159 kb on + strand, within HMPREF1078_RS02495 at 619.185 kb on - strand, within HMPREF1078_RS02495 at 619.185 kb on - strand, within HMPREF1078_RS02495 at 619.189 kb on - strand, within HMPREF1078_RS02495 at 619.189 kb on - strand, within HMPREF1078_RS02495 at 619.189 kb on - strand, within HMPREF1078_RS02495 at 619.189 kb on - strand, within HMPREF1078_RS02495 at 619.207 kb on - strand, within HMPREF1078_RS02495 at 619.212 kb on + strand, within HMPREF1078_RS02495 at 619.212 kb on + strand, within HMPREF1078_RS02495 at 619.213 kb on - strand, within HMPREF1078_RS02495 at 619.311 kb on + strand, within HMPREF1078_RS02495 at 619.311 kb on + strand, within HMPREF1078_RS02495 at 619.312 kb on - strand, within HMPREF1078_RS02495 at 619.312 kb on - strand, within HMPREF1078_RS02495 at 619.453 kb on - strand, within HMPREF1078_RS02495 at 619.542 kb on + strand, within HMPREF1078_RS02495 at 619.553 kb on + strand, within HMPREF1078_RS02495 at 619.665 kb on + strand at 619.716 kb on + strand at 619.832 kb on + strand at 619.840 kb on - strand at 619.842 kb on - strand at 619.842 kb on - strand at 619.843 kb on + strand at 619.844 kb on - strand at 619.844 kb on - strand at 619.895 kb on + strand at 619.895 kb on + strand at 620.014 kb on - strand at 620.156 kb on + strand, within HMPREF1078_RS02500 at 620.192 kb on - strand, within HMPREF1078_RS02500 at 620.193 kb on + strand, within HMPREF1078_RS02500 at 620.194 kb on - strand, within HMPREF1078_RS02500 at 620.264 kb on + strand, within HMPREF1078_RS02500 at 620.265 kb on - strand, within HMPREF1078_RS02500 at 620.281 kb on - strand, within HMPREF1078_RS02500 at 620.374 kb on + strand, within HMPREF1078_RS02500 at 620.374 kb on + strand, within HMPREF1078_RS02500 at 620.374 kb on + strand, within HMPREF1078_RS02500 at 620.375 kb on - strand, within HMPREF1078_RS02500 at 620.379 kb on - strand, within HMPREF1078_RS02500 at 620.379 kb on - strand, within HMPREF1078_RS02500 at 620.426 kb on + strand, within HMPREF1078_RS02500 at 620.427 kb on - strand, within HMPREF1078_RS02500 at 620.429 kb on - strand, within HMPREF1078_RS02500 at 620.429 kb on - strand, within HMPREF1078_RS02500 at 620.431 kb on - strand, within HMPREF1078_RS02500 at 620.489 kb on + strand, within HMPREF1078_RS02500 at 620.604 kb on + strand, within HMPREF1078_RS02500 at 620.604 kb on + strand, within HMPREF1078_RS02500 at 620.605 kb on - strand, within HMPREF1078_RS02500 at 620.612 kb on + strand, within HMPREF1078_RS02500 at 620.698 kb on + strand, within HMPREF1078_RS02500 at 620.698 kb on + strand, within HMPREF1078_RS02500 at 620.709 kb on + strand, within HMPREF1078_RS02500 at 620.815 kb on - strand, within HMPREF1078_RS02500 at 620.827 kb on - strand, within HMPREF1078_RS02500
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mg/mL (C) remove 616,077 - HMPREF1078_RS02490 0.58 +0.8 616,270 + HMPREF1078_RS02490 0.67 +1.6 616,304 + HMPREF1078_RS02490 0.68 -3.2 616,305 - HMPREF1078_RS02490 0.68 +0.3 616,365 + HMPREF1078_RS02490 0.71 -0.2 616,461 + HMPREF1078_RS02490 0.75 -0.4 616,718 - HMPREF1078_RS02490 0.87 +0.1 616,723 - HMPREF1078_RS02490 0.87 +0.6 616,920 + -2.5 616,951 + +0.6 616,952 - -2.0 616,953 + +0.9 616,989 + +0.0 617,015 - +1.5 617,032 - +1.3 617,033 + +0.3 617,036 + -1.5 617,036 + -2.5 617,037 - -1.4 617,110 + -1.5 617,111 - -0.9 617,322 + HMPREF1078_RS02495 0.10 +2.1 617,377 - HMPREF1078_RS02495 0.12 +1.1 617,404 - HMPREF1078_RS02495 0.13 -0.1 617,449 + HMPREF1078_RS02495 0.15 +0.2 617,449 + HMPREF1078_RS02495 0.15 -0.3 617,450 - HMPREF1078_RS02495 0.15 -0.8 617,628 - HMPREF1078_RS02495 0.21 +3.1 617,632 - HMPREF1078_RS02495 0.21 -0.1 617,694 - HMPREF1078_RS02495 0.23 -0.9 617,766 - HMPREF1078_RS02495 0.26 -0.4 617,840 - HMPREF1078_RS02495 0.29 -2.3 617,854 + HMPREF1078_RS02495 0.29 -1.6 617,927 + HMPREF1078_RS02495 0.32 +0.7 618,108 - HMPREF1078_RS02495 0.38 +0.7 618,181 + HMPREF1078_RS02495 0.41 -0.5 618,251 + HMPREF1078_RS02495 0.43 -0.6 618,252 - HMPREF1078_RS02495 0.43 +2.1 618,325 + HMPREF1078_RS02495 0.46 -1.4 618,326 - HMPREF1078_RS02495 0.46 +9.7 618,326 - HMPREF1078_RS02495 0.46 -1.7 618,326 - HMPREF1078_RS02495 0.46 -2.2 618,389 + HMPREF1078_RS02495 0.48 +0.6 618,392 - HMPREF1078_RS02495 0.48 +2.1 618,489 - HMPREF1078_RS02495 0.52 -0.3 618,492 + HMPREF1078_RS02495 0.52 -0.5 618,585 - HMPREF1078_RS02495 0.55 +5.7 618,632 - HMPREF1078_RS02495 0.57 +1.9 618,699 - HMPREF1078_RS02495 0.59 -1.2 618,714 - HMPREF1078_RS02495 0.60 -0.4 618,846 + HMPREF1078_RS02495 0.64 -1.3 618,847 - HMPREF1078_RS02495 0.64 +0.6 619,142 + HMPREF1078_RS02495 0.75 +0.2 619,159 + HMPREF1078_RS02495 0.75 -0.9 619,185 - HMPREF1078_RS02495 0.76 +0.2 619,185 - HMPREF1078_RS02495 0.76 +0.4 619,189 - HMPREF1078_RS02495 0.76 -0.9 619,189 - HMPREF1078_RS02495 0.76 +0.3 619,189 - HMPREF1078_RS02495 0.76 +0.4 619,189 - HMPREF1078_RS02495 0.76 +0.8 619,207 - HMPREF1078_RS02495 0.77 -0.9 619,212 + HMPREF1078_RS02495 0.77 -1.5 619,212 + HMPREF1078_RS02495 0.77 -0.3 619,213 - HMPREF1078_RS02495 0.77 +1.6 619,311 + HMPREF1078_RS02495 0.81 -0.4 619,311 + HMPREF1078_RS02495 0.81 +0.2 619,312 - HMPREF1078_RS02495 0.81 +1.4 619,312 - HMPREF1078_RS02495 0.81 -1.3 619,453 - HMPREF1078_RS02495 0.86 +0.0 619,542 + HMPREF1078_RS02495 0.89 +1.3 619,553 + HMPREF1078_RS02495 0.89 -1.1 619,665 + +3.4 619,716 + -1.4 619,832 + -1.6 619,840 - +0.3 619,842 - -5.6 619,842 - -1.5 619,843 + +0.6 619,844 - +3.7 619,844 - -1.3 619,895 + -0.7 619,895 + +0.6 620,014 - -0.8 620,156 + HMPREF1078_RS02500 0.11 +0.7 620,192 - HMPREF1078_RS02500 0.12 -1.0 620,193 + HMPREF1078_RS02500 0.12 -0.7 620,194 - HMPREF1078_RS02500 0.12 +0.9 620,264 + HMPREF1078_RS02500 0.15 -0.7 620,265 - HMPREF1078_RS02500 0.15 -1.3 620,281 - HMPREF1078_RS02500 0.15 -0.0 620,374 + HMPREF1078_RS02500 0.19 -1.0 620,374 + HMPREF1078_RS02500 0.19 -0.6 620,374 + HMPREF1078_RS02500 0.19 -1.4 620,375 - HMPREF1078_RS02500 0.19 -1.1 620,379 - HMPREF1078_RS02500 0.19 +0.1 620,379 - HMPREF1078_RS02500 0.19 -1.3 620,426 + HMPREF1078_RS02500 0.21 -0.0 620,427 - HMPREF1078_RS02500 0.21 +0.2 620,429 - HMPREF1078_RS02500 0.21 +2.2 620,429 - HMPREF1078_RS02500 0.21 +0.4 620,431 - HMPREF1078_RS02500 0.21 +0.4 620,489 + HMPREF1078_RS02500 0.23 -0.5 620,604 + HMPREF1078_RS02500 0.27 +0.1 620,604 + HMPREF1078_RS02500 0.27 +0.4 620,605 - HMPREF1078_RS02500 0.27 +0.2 620,612 + HMPREF1078_RS02500 0.28 +0.6 620,698 + HMPREF1078_RS02500 0.31 -1.7 620,698 + HMPREF1078_RS02500 0.31 +0.4 620,709 + HMPREF1078_RS02500 0.31 +0.1 620,815 - HMPREF1078_RS02500 0.35 -0.2 620,827 - HMPREF1078_RS02500 0.36 -0.8
Or see this region's nucleotide sequence