Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00960

Experiment: Sucrose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS00955 and HMPREF1078_RS00960 are separated by 75 nucleotidesHMPREF1078_RS00960 and HMPREF1078_RS00965 overlap by 4 nucleotides HMPREF1078_RS00955: HMPREF1078_RS00955 - V-type ATP synthase subunit B, at 233,709 to 235,028 _RS00955 HMPREF1078_RS00960: HMPREF1078_RS00960 - V-type ATP synthase subunit D, at 235,104 to 235,727 _RS00960 HMPREF1078_RS00965: HMPREF1078_RS00965 - V-type ATPase 116kDa subunit family protein, at 235,724 to 237,544 _RS00965 Position (kb) 235 236Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 234.116 kb on + strand, within HMPREF1078_RS00955at 234.117 kb on - strand, within HMPREF1078_RS00955at 234.117 kb on - strand, within HMPREF1078_RS00955at 234.124 kb on + strand, within HMPREF1078_RS00955at 234.178 kb on + strand, within HMPREF1078_RS00955at 234.178 kb on + strand, within HMPREF1078_RS00955at 234.219 kb on - strand, within HMPREF1078_RS00955at 234.252 kb on + strand, within HMPREF1078_RS00955at 234.269 kb on + strand, within HMPREF1078_RS00955at 234.270 kb on - strand, within HMPREF1078_RS00955at 234.270 kb on - strand, within HMPREF1078_RS00955at 234.275 kb on + strand, within HMPREF1078_RS00955at 234.299 kb on + strand, within HMPREF1078_RS00955at 234.311 kb on + strand, within HMPREF1078_RS00955at 234.337 kb on + strand, within HMPREF1078_RS00955at 234.338 kb on - strand, within HMPREF1078_RS00955at 234.338 kb on - strand, within HMPREF1078_RS00955at 234.344 kb on + strand, within HMPREF1078_RS00955at 234.345 kb on - strand, within HMPREF1078_RS00955at 234.379 kb on - strand, within HMPREF1078_RS00955at 234.439 kb on - strand, within HMPREF1078_RS00955at 234.632 kb on + strand, within HMPREF1078_RS00955at 234.633 kb on - strand, within HMPREF1078_RS00955at 234.633 kb on - strand, within HMPREF1078_RS00955at 234.633 kb on - strand, within HMPREF1078_RS00955at 234.639 kb on + strand, within HMPREF1078_RS00955at 234.639 kb on + strand, within HMPREF1078_RS00955at 234.639 kb on + strand, within HMPREF1078_RS00955at 234.639 kb on + strand, within HMPREF1078_RS00955at 234.640 kb on - strand, within HMPREF1078_RS00955at 234.640 kb on - strand, within HMPREF1078_RS00955at 234.661 kb on - strand, within HMPREF1078_RS00955at 234.675 kb on - strand, within HMPREF1078_RS00955at 234.796 kb on - strand, within HMPREF1078_RS00955at 234.863 kb on + strand, within HMPREF1078_RS00955at 234.863 kb on + strand, within HMPREF1078_RS00955at 234.864 kb on - strand, within HMPREF1078_RS00955at 234.864 kb on - strand, within HMPREF1078_RS00955at 234.886 kb on - strand, within HMPREF1078_RS00955at 235.056 kb on + strandat 235.069 kb on + strandat 235.070 kb on - strandat 235.070 kb on - strandat 235.070 kb on - strandat 235.070 kb on - strandat 235.090 kb on + strandat 235.090 kb on + strandat 235.090 kb on + strandat 235.091 kb on - strandat 235.096 kb on + strandat 235.097 kb on - strandat 235.580 kb on - strand, within HMPREF1078_RS00960at 235.595 kb on + strand, within HMPREF1078_RS00960at 235.596 kb on - strand, within HMPREF1078_RS00960at 235.676 kb on + strandat 235.692 kb on - strandat 235.724 kb on - strandat 235.729 kb on - strandat 235.731 kb on + strandat 235.745 kb on + strandat 235.746 kb on - strandat 235.758 kb on + strandat 235.759 kb on - strandat 235.760 kb on + strandat 235.761 kb on - strandat 235.765 kb on + strandat 235.766 kb on - strandat 235.766 kb on - strandat 235.772 kb on + strandat 235.772 kb on + strandat 235.773 kb on - strandat 235.854 kb on + strandat 235.884 kb on + strandat 235.885 kb on - strandat 235.885 kb on - strandat 235.885 kb on - strandat 235.885 kb on - strandat 235.885 kb on - strandat 235.888 kb on + strandat 235.889 kb on - strandat 236.026 kb on - strand, within HMPREF1078_RS00965at 236.026 kb on - strand, within HMPREF1078_RS00965at 236.063 kb on + strand, within HMPREF1078_RS00965at 236.063 kb on + strand, within HMPREF1078_RS00965at 236.063 kb on + strand, within HMPREF1078_RS00965at 236.065 kb on + strand, within HMPREF1078_RS00965at 236.065 kb on + strand, within HMPREF1078_RS00965at 236.065 kb on + strand, within HMPREF1078_RS00965at 236.066 kb on - strand, within HMPREF1078_RS00965at 236.066 kb on - strand, within HMPREF1078_RS00965at 236.066 kb on - strand, within HMPREF1078_RS00965at 236.066 kb on - strand, within HMPREF1078_RS00965at 236.066 kb on - strand, within HMPREF1078_RS00965at 236.066 kb on - strand, within HMPREF1078_RS00965at 236.070 kb on - strand, within HMPREF1078_RS00965at 236.090 kb on + strand, within HMPREF1078_RS00965at 236.091 kb on - strand, within HMPREF1078_RS00965at 236.099 kb on - strand, within HMPREF1078_RS00965at 236.159 kb on + strand, within HMPREF1078_RS00965at 236.160 kb on - strand, within HMPREF1078_RS00965at 236.167 kb on + strand, within HMPREF1078_RS00965at 236.184 kb on - strand, within HMPREF1078_RS00965at 236.184 kb on - strand, within HMPREF1078_RS00965at 236.184 kb on - strand, within HMPREF1078_RS00965at 236.338 kb on + strand, within HMPREF1078_RS00965at 236.338 kb on + strand, within HMPREF1078_RS00965at 236.338 kb on + strand, within HMPREF1078_RS00965at 236.339 kb on - strand, within HMPREF1078_RS00965at 236.350 kb on + strand, within HMPREF1078_RS00965at 236.369 kb on + strand, within HMPREF1078_RS00965at 236.370 kb on - strand, within HMPREF1078_RS00965at 236.370 kb on - strand, within HMPREF1078_RS00965at 236.384 kb on + strand, within HMPREF1078_RS00965at 236.384 kb on + strand, within HMPREF1078_RS00965at 236.384 kb on + strand, within HMPREF1078_RS00965at 236.385 kb on - strand, within HMPREF1078_RS00965at 236.385 kb on - strand, within HMPREF1078_RS00965at 236.385 kb on - strand, within HMPREF1078_RS00965at 236.389 kb on + strand, within HMPREF1078_RS00965at 236.389 kb on + strand, within HMPREF1078_RS00965at 236.397 kb on + strand, within HMPREF1078_RS00965at 236.398 kb on - strand, within HMPREF1078_RS00965at 236.440 kb on + strand, within HMPREF1078_RS00965at 236.441 kb on - strand, within HMPREF1078_RS00965at 236.549 kb on + strand, within HMPREF1078_RS00965at 236.550 kb on - strand, within HMPREF1078_RS00965at 236.571 kb on + strand, within HMPREF1078_RS00965at 236.571 kb on + strand, within HMPREF1078_RS00965at 236.572 kb on - strand, within HMPREF1078_RS00965at 236.663 kb on + strand, within HMPREF1078_RS00965

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose 10 mg/mL (C)
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234,116 + HMPREF1078_RS00955 0.31 +6.2
234,117 - HMPREF1078_RS00955 0.31 +6.7
234,117 - HMPREF1078_RS00955 0.31 +7.5
234,124 + HMPREF1078_RS00955 0.31 -3.3
234,178 + HMPREF1078_RS00955 0.36 +4.8
234,178 + HMPREF1078_RS00955 0.36 +7.4
234,219 - HMPREF1078_RS00955 0.39 +6.6
234,252 + HMPREF1078_RS00955 0.41 +5.5
234,269 + HMPREF1078_RS00955 0.42 +6.8
234,270 - HMPREF1078_RS00955 0.42 +0.8
234,270 - HMPREF1078_RS00955 0.42 +6.0
234,275 + HMPREF1078_RS00955 0.43 +7.1
234,299 + HMPREF1078_RS00955 0.45 +5.8
234,311 + HMPREF1078_RS00955 0.46 +6.3
234,337 + HMPREF1078_RS00955 0.48 +6.2
234,338 - HMPREF1078_RS00955 0.48 +7.0
234,338 - HMPREF1078_RS00955 0.48 +4.1
234,344 + HMPREF1078_RS00955 0.48 +7.1
234,345 - HMPREF1078_RS00955 0.48 +5.3
234,379 - HMPREF1078_RS00955 0.51 +5.8
234,439 - HMPREF1078_RS00955 0.55 +6.4
234,632 + HMPREF1078_RS00955 0.70 +7.0
234,633 - HMPREF1078_RS00955 0.70 +6.4
234,633 - HMPREF1078_RS00955 0.70 +7.1
234,633 - HMPREF1078_RS00955 0.70 +5.2
234,639 + HMPREF1078_RS00955 0.70 +7.6
234,639 + HMPREF1078_RS00955 0.70 +6.1
234,639 + HMPREF1078_RS00955 0.70 +7.1
234,639 + HMPREF1078_RS00955 0.70 +4.6
234,640 - HMPREF1078_RS00955 0.71 +7.3
234,640 - HMPREF1078_RS00955 0.71 +3.7
234,661 - HMPREF1078_RS00955 0.72 +7.2
234,675 - HMPREF1078_RS00955 0.73 +5.2
234,796 - HMPREF1078_RS00955 0.82 +5.8
234,863 + HMPREF1078_RS00955 0.87 +5.8
234,863 + HMPREF1078_RS00955 0.87 +6.3
234,864 - HMPREF1078_RS00955 0.88 +5.6
234,864 - HMPREF1078_RS00955 0.88 +5.1
234,886 - HMPREF1078_RS00955 0.89 +6.7
235,056 + +2.5
235,069 + -0.9
235,070 - +5.7
235,070 - +6.4
235,070 - +5.9
235,070 - +8.0
235,090 + +1.7
235,090 + +2.0
235,090 + +1.3
235,091 - +6.4
235,096 + +1.9
235,097 - +6.7
235,580 - HMPREF1078_RS00960 0.76 +5.7
235,595 + HMPREF1078_RS00960 0.79 -0.6
235,596 - HMPREF1078_RS00960 0.79 +5.8
235,676 + +2.2
235,692 - +5.9
235,724 - +7.1
235,729 - +7.4
235,731 + +6.6
235,745 + +7.4
235,746 - +6.7
235,758 + +6.0
235,759 - +6.6
235,760 + +6.4
235,761 - +6.6
235,765 + +5.6
235,766 - +4.9
235,766 - +7.2
235,772 + +6.1
235,772 + +5.7
235,773 - +6.2
235,854 + +6.3
235,884 + +5.2
235,885 - +6.7
235,885 - +7.3
235,885 - +6.7
235,885 - +3.6
235,885 - +7.3
235,888 + +6.1
235,889 - +5.6
236,026 - HMPREF1078_RS00965 0.17 +5.8
236,026 - HMPREF1078_RS00965 0.17 +4.9
236,063 + HMPREF1078_RS00965 0.19 +6.1
236,063 + HMPREF1078_RS00965 0.19 +6.2
236,063 + HMPREF1078_RS00965 0.19 +5.2
236,065 + HMPREF1078_RS00965 0.19 +6.2
236,065 + HMPREF1078_RS00965 0.19 +5.7
236,065 + HMPREF1078_RS00965 0.19 +5.8
236,066 - HMPREF1078_RS00965 0.19 +6.0
236,066 - HMPREF1078_RS00965 0.19 +7.3
236,066 - HMPREF1078_RS00965 0.19 +6.2
236,066 - HMPREF1078_RS00965 0.19 +6.6
236,066 - HMPREF1078_RS00965 0.19 +5.9
236,066 - HMPREF1078_RS00965 0.19 +7.0
236,070 - HMPREF1078_RS00965 0.19 +7.1
236,090 + HMPREF1078_RS00965 0.20 +6.8
236,091 - HMPREF1078_RS00965 0.20 +5.4
236,099 - HMPREF1078_RS00965 0.21 +6.8
236,159 + HMPREF1078_RS00965 0.24 +7.4
236,160 - HMPREF1078_RS00965 0.24 +6.3
236,167 + HMPREF1078_RS00965 0.24 +6.6
236,184 - HMPREF1078_RS00965 0.25 +4.6
236,184 - HMPREF1078_RS00965 0.25 +4.7
236,184 - HMPREF1078_RS00965 0.25 +7.3
236,338 + HMPREF1078_RS00965 0.34 +6.4
236,338 + HMPREF1078_RS00965 0.34 +7.4
236,338 + HMPREF1078_RS00965 0.34 +6.8
236,339 - HMPREF1078_RS00965 0.34 +5.9
236,350 + HMPREF1078_RS00965 0.34 +5.9
236,369 + HMPREF1078_RS00965 0.35 +5.4
236,370 - HMPREF1078_RS00965 0.35 +6.4
236,370 - HMPREF1078_RS00965 0.35 +5.2
236,384 + HMPREF1078_RS00965 0.36 +4.3
236,384 + HMPREF1078_RS00965 0.36 +6.3
236,384 + HMPREF1078_RS00965 0.36 +4.3
236,385 - HMPREF1078_RS00965 0.36 +5.6
236,385 - HMPREF1078_RS00965 0.36 +7.4
236,385 - HMPREF1078_RS00965 0.36 +5.8
236,389 + HMPREF1078_RS00965 0.37 +5.6
236,389 + HMPREF1078_RS00965 0.37 +6.3
236,397 + HMPREF1078_RS00965 0.37 +6.7
236,398 - HMPREF1078_RS00965 0.37 +5.3
236,440 + HMPREF1078_RS00965 0.39 +5.0
236,441 - HMPREF1078_RS00965 0.39 +6.5
236,549 + HMPREF1078_RS00965 0.45 +7.0
236,550 - HMPREF1078_RS00965 0.45 +6.0
236,571 + HMPREF1078_RS00965 0.47 +6.8
236,571 + HMPREF1078_RS00965 0.47 +7.0
236,572 - HMPREF1078_RS00965 0.47 +7.0
236,663 + HMPREF1078_RS00965 0.52 +7.3

Or see this region's nucleotide sequence