Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16690

Experiment: NAG 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS16680 and HMPREF1078_RS16685 are separated by 40 nucleotidesHMPREF1078_RS16685 and HMPREF1078_RS16690 are separated by 12 nucleotidesHMPREF1078_RS16690 and HMPREF1078_RS16695 are separated by 23 nucleotides HMPREF1078_RS16680: HMPREF1078_RS16680 - thioesterase, at 49,067 to 49,804 _RS16680 HMPREF1078_RS16685: HMPREF1078_RS16685 - acetolactate synthase small subunit, at 49,845 to 50,396 _RS16685 HMPREF1078_RS16690: HMPREF1078_RS16690 - biosynthetic-type acetolactate synthase large subunit, at 50,409 to 52,109 _RS16690 HMPREF1078_RS16695: HMPREF1078_RS16695 - dihydroxy-acid dehydratase, at 52,133 to 53,968 _RS16695 Position (kb) 50 51 52 53Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 49.468 kb on + strand, within HMPREF1078_RS16680at 49.468 kb on + strand, within HMPREF1078_RS16680at 49.492 kb on + strand, within HMPREF1078_RS16680at 49.561 kb on - strand, within HMPREF1078_RS16680at 49.570 kb on + strand, within HMPREF1078_RS16680at 49.571 kb on + strand, within HMPREF1078_RS16680at 49.571 kb on - strand, within HMPREF1078_RS16680at 49.571 kb on - strand, within HMPREF1078_RS16680at 49.571 kb on - strand, within HMPREF1078_RS16680at 49.634 kb on - strand, within HMPREF1078_RS16680at 49.648 kb on + strand, within HMPREF1078_RS16680at 49.649 kb on - strand, within HMPREF1078_RS16680at 49.651 kb on - strand, within HMPREF1078_RS16680at 49.697 kb on + strand, within HMPREF1078_RS16680at 49.697 kb on + strand, within HMPREF1078_RS16680at 49.697 kb on + strand, within HMPREF1078_RS16680at 49.698 kb on - strand, within HMPREF1078_RS16680at 49.705 kb on - strand, within HMPREF1078_RS16680at 49.728 kb on - strand, within HMPREF1078_RS16680at 49.841 kb on + strandat 49.865 kb on + strandat 49.866 kb on - strandat 49.866 kb on - strandat 49.887 kb on - strandat 50.000 kb on - strand, within HMPREF1078_RS16685at 50.058 kb on - strand, within HMPREF1078_RS16685at 50.058 kb on - strand, within HMPREF1078_RS16685at 50.060 kb on - strand, within HMPREF1078_RS16685at 50.118 kb on - strand, within HMPREF1078_RS16685at 50.119 kb on + strand, within HMPREF1078_RS16685at 50.119 kb on + strand, within HMPREF1078_RS16685at 50.156 kb on + strand, within HMPREF1078_RS16685at 50.161 kb on + strand, within HMPREF1078_RS16685at 50.162 kb on - strand, within HMPREF1078_RS16685at 50.165 kb on - strand, within HMPREF1078_RS16685at 50.178 kb on - strand, within HMPREF1078_RS16685at 50.253 kb on - strand, within HMPREF1078_RS16685at 50.256 kb on + strand, within HMPREF1078_RS16685at 50.257 kb on - strand, within HMPREF1078_RS16685at 50.257 kb on - strand, within HMPREF1078_RS16685at 50.257 kb on - strand, within HMPREF1078_RS16685at 50.257 kb on - strand, within HMPREF1078_RS16685at 50.257 kb on - strand, within HMPREF1078_RS16685at 50.258 kb on + strand, within HMPREF1078_RS16685at 50.346 kb on + strandat 50.348 kb on - strandat 50.351 kb on + strandat 50.376 kb on - strandat 50.376 kb on - strandat 50.376 kb on - strandat 50.396 kb on + strandat 50.396 kb on + strandat 50.414 kb on + strandat 50.415 kb on - strandat 50.424 kb on + strandat 50.424 kb on + strandat 50.425 kb on - strandat 50.436 kb on + strandat 50.466 kb on + strandat 50.467 kb on - strandat 50.467 kb on - strandat 50.467 kb on - strandat 50.471 kb on + strandat 50.471 kb on + strandat 50.472 kb on - strandat 50.627 kb on + strand, within HMPREF1078_RS16690at 50.628 kb on - strand, within HMPREF1078_RS16690at 50.628 kb on - strand, within HMPREF1078_RS16690at 50.628 kb on - strand, within HMPREF1078_RS16690at 50.687 kb on + strand, within HMPREF1078_RS16690at 50.688 kb on - strand, within HMPREF1078_RS16690at 50.793 kb on - strand, within HMPREF1078_RS16690at 50.867 kb on + strand, within HMPREF1078_RS16690at 50.889 kb on - strand, within HMPREF1078_RS16690at 50.937 kb on - strand, within HMPREF1078_RS16690at 51.114 kb on + strand, within HMPREF1078_RS16690at 51.129 kb on - strand, within HMPREF1078_RS16690at 51.129 kb on - strand, within HMPREF1078_RS16690at 51.338 kb on + strand, within HMPREF1078_RS16690at 51.338 kb on + strand, within HMPREF1078_RS16690at 51.345 kb on - strand, within HMPREF1078_RS16690at 51.537 kb on - strand, within HMPREF1078_RS16690at 51.554 kb on - strand, within HMPREF1078_RS16690at 51.565 kb on + strand, within HMPREF1078_RS16690at 51.566 kb on - strand, within HMPREF1078_RS16690at 51.566 kb on - strand, within HMPREF1078_RS16690at 51.570 kb on + strand, within HMPREF1078_RS16690at 51.586 kb on + strand, within HMPREF1078_RS16690at 51.650 kb on + strand, within HMPREF1078_RS16690at 51.713 kb on - strand, within HMPREF1078_RS16690at 51.738 kb on - strand, within HMPREF1078_RS16690at 51.815 kb on + strand, within HMPREF1078_RS16690at 51.858 kb on - strand, within HMPREF1078_RS16690at 51.858 kb on - strand, within HMPREF1078_RS16690at 51.919 kb on + strand, within HMPREF1078_RS16690at 51.963 kb on + strandat 51.986 kb on - strandat 52.003 kb on + strandat 52.004 kb on - strandat 52.008 kb on - strandat 52.059 kb on + strandat 52.312 kb on + strandat 52.338 kb on - strand, within HMPREF1078_RS16695at 52.338 kb on - strand, within HMPREF1078_RS16695at 52.340 kb on - strand, within HMPREF1078_RS16695at 52.394 kb on - strand, within HMPREF1078_RS16695at 52.463 kb on + strand, within HMPREF1078_RS16695at 52.464 kb on - strand, within HMPREF1078_RS16695at 52.479 kb on - strand, within HMPREF1078_RS16695at 52.482 kb on + strand, within HMPREF1078_RS16695at 52.483 kb on - strand, within HMPREF1078_RS16695at 52.483 kb on - strand, within HMPREF1078_RS16695at 52.691 kb on - strand, within HMPREF1078_RS16695at 52.728 kb on + strand, within HMPREF1078_RS16695at 52.783 kb on + strand, within HMPREF1078_RS16695at 52.783 kb on + strand, within HMPREF1078_RS16695at 52.984 kb on + strand, within HMPREF1078_RS16695at 52.985 kb on - strand, within HMPREF1078_RS16695

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG 10 mg/mL (C)
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49,468 + HMPREF1078_RS16680 0.54 -1.1
49,468 + HMPREF1078_RS16680 0.54 -3.7
49,492 + HMPREF1078_RS16680 0.58 -3.5
49,561 - HMPREF1078_RS16680 0.67 -1.2
49,570 + HMPREF1078_RS16680 0.68 -2.6
49,571 + HMPREF1078_RS16680 0.68 -3.1
49,571 - HMPREF1078_RS16680 0.68 +0.1
49,571 - HMPREF1078_RS16680 0.68 +1.8
49,571 - HMPREF1078_RS16680 0.68 +0.6
49,634 - HMPREF1078_RS16680 0.77 +0.1
49,648 + HMPREF1078_RS16680 0.79 -3.6
49,649 - HMPREF1078_RS16680 0.79 +1.0
49,651 - HMPREF1078_RS16680 0.79 +0.3
49,697 + HMPREF1078_RS16680 0.85 -1.9
49,697 + HMPREF1078_RS16680 0.85 -2.4
49,697 + HMPREF1078_RS16680 0.85 -3.3
49,698 - HMPREF1078_RS16680 0.86 -1.2
49,705 - HMPREF1078_RS16680 0.86 +1.2
49,728 - HMPREF1078_RS16680 0.90 -2.3
49,841 + -3.5
49,865 + -2.6
49,866 - +1.2
49,866 - +1.1
49,887 - -0.9
50,000 - HMPREF1078_RS16685 0.28 -1.0
50,058 - HMPREF1078_RS16685 0.39 +0.9
50,058 - HMPREF1078_RS16685 0.39 -0.4
50,060 - HMPREF1078_RS16685 0.39 -2.6
50,118 - HMPREF1078_RS16685 0.49 -0.1
50,119 + HMPREF1078_RS16685 0.50 -3.3
50,119 + HMPREF1078_RS16685 0.50 -0.3
50,156 + HMPREF1078_RS16685 0.56 -4.0
50,161 + HMPREF1078_RS16685 0.57 -2.2
50,162 - HMPREF1078_RS16685 0.57 -0.3
50,165 - HMPREF1078_RS16685 0.58 -0.4
50,178 - HMPREF1078_RS16685 0.60 -2.8
50,253 - HMPREF1078_RS16685 0.74 -3.0
50,256 + HMPREF1078_RS16685 0.74 -1.2
50,257 - HMPREF1078_RS16685 0.75 -4.4
50,257 - HMPREF1078_RS16685 0.75 -3.0
50,257 - HMPREF1078_RS16685 0.75 +0.9
50,257 - HMPREF1078_RS16685 0.75 -2.8
50,257 - HMPREF1078_RS16685 0.75 +0.5
50,258 + HMPREF1078_RS16685 0.75 -0.3
50,346 + -1.3
50,348 - -3.8
50,351 + -2.1
50,376 - -3.2
50,376 - -3.5
50,376 - -3.1
50,396 + -3.6
50,396 + -2.9
50,414 + -2.6
50,415 - -1.0
50,424 + -3.2
50,424 + -3.9
50,425 - +0.6
50,436 + -2.9
50,466 + -3.5
50,467 - -4.0
50,467 - -2.7
50,467 - -3.8
50,471 + -3.1
50,471 + -2.8
50,472 - -1.9
50,627 + HMPREF1078_RS16690 0.13 -1.3
50,628 - HMPREF1078_RS16690 0.13 -3.6
50,628 - HMPREF1078_RS16690 0.13 -2.9
50,628 - HMPREF1078_RS16690 0.13 -3.4
50,687 + HMPREF1078_RS16690 0.16 -4.0
50,688 - HMPREF1078_RS16690 0.16 -0.9
50,793 - HMPREF1078_RS16690 0.23 -3.2
50,867 + HMPREF1078_RS16690 0.27 -3.1
50,889 - HMPREF1078_RS16690 0.28 -3.2
50,937 - HMPREF1078_RS16690 0.31 -2.1
51,114 + HMPREF1078_RS16690 0.41 -1.5
51,129 - HMPREF1078_RS16690 0.42 -0.6
51,129 - HMPREF1078_RS16690 0.42 -3.6
51,338 + HMPREF1078_RS16690 0.55 -0.1
51,338 + HMPREF1078_RS16690 0.55 -3.2
51,345 - HMPREF1078_RS16690 0.55 -2.5
51,537 - HMPREF1078_RS16690 0.66 -3.0
51,554 - HMPREF1078_RS16690 0.67 -3.7
51,565 + HMPREF1078_RS16690 0.68 -4.8
51,566 - HMPREF1078_RS16690 0.68 -3.3
51,566 - HMPREF1078_RS16690 0.68 -3.9
51,570 + HMPREF1078_RS16690 0.68 -3.9
51,586 + HMPREF1078_RS16690 0.69 -3.4
51,650 + HMPREF1078_RS16690 0.73 -1.9
51,713 - HMPREF1078_RS16690 0.77 -3.7
51,738 - HMPREF1078_RS16690 0.78 -3.6
51,815 + HMPREF1078_RS16690 0.83 -3.0
51,858 - HMPREF1078_RS16690 0.85 -0.5
51,858 - HMPREF1078_RS16690 0.85 -3.5
51,919 + HMPREF1078_RS16690 0.89 -3.6
51,963 + -0.1
51,986 - -3.2
52,003 + -3.7
52,004 - -3.7
52,008 - -1.1
52,059 + -3.5
52,312 + -0.9
52,338 - HMPREF1078_RS16695 0.11 -1.1
52,338 - HMPREF1078_RS16695 0.11 -2.7
52,340 - HMPREF1078_RS16695 0.11 -2.2
52,394 - HMPREF1078_RS16695 0.14 -2.7
52,463 + HMPREF1078_RS16695 0.18 -3.5
52,464 - HMPREF1078_RS16695 0.18 -2.7
52,479 - HMPREF1078_RS16695 0.19 -2.7
52,482 + HMPREF1078_RS16695 0.19 -2.2
52,483 - HMPREF1078_RS16695 0.19 -3.8
52,483 - HMPREF1078_RS16695 0.19 -1.9
52,691 - HMPREF1078_RS16695 0.30 -2.3
52,728 + HMPREF1078_RS16695 0.32 -2.3
52,783 + HMPREF1078_RS16695 0.35 -3.3
52,783 + HMPREF1078_RS16695 0.35 -2.7
52,984 + HMPREF1078_RS16695 0.46 -4.5
52,985 - HMPREF1078_RS16695 0.46 -1.9

Or see this region's nucleotide sequence