Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16675

Experiment: NAG 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS16670 and HMPREF1078_RS16675 are separated by 161 nucleotidesHMPREF1078_RS16675 and HMPREF1078_RS16680 are separated by 85 nucleotidesHMPREF1078_RS16680 and HMPREF1078_RS16685 are separated by 40 nucleotides HMPREF1078_RS16670: HMPREF1078_RS16670 - metallophosphoesterase, at 46,607 to 47,776 _RS16670 HMPREF1078_RS16675: HMPREF1078_RS16675 - ketol-acid reductoisomerase, at 47,938 to 48,981 _RS16675 HMPREF1078_RS16680: HMPREF1078_RS16680 - thioesterase, at 49,067 to 49,804 _RS16680 HMPREF1078_RS16685: HMPREF1078_RS16685 - acetolactate synthase small subunit, at 49,845 to 50,396 _RS16685 Position (kb) 47 48 49Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 46.969 kb on - strand, within HMPREF1078_RS16670at 46.976 kb on + strand, within HMPREF1078_RS16670at 47.062 kb on - strand, within HMPREF1078_RS16670at 47.064 kb on + strand, within HMPREF1078_RS16670at 47.068 kb on + strand, within HMPREF1078_RS16670at 47.069 kb on - strand, within HMPREF1078_RS16670at 47.069 kb on - strand, within HMPREF1078_RS16670at 47.069 kb on - strand, within HMPREF1078_RS16670at 47.092 kb on - strand, within HMPREF1078_RS16670at 47.148 kb on + strand, within HMPREF1078_RS16670at 47.148 kb on + strand, within HMPREF1078_RS16670at 47.148 kb on + strand, within HMPREF1078_RS16670at 47.236 kb on + strand, within HMPREF1078_RS16670at 47.237 kb on - strand, within HMPREF1078_RS16670at 47.305 kb on - strand, within HMPREF1078_RS16670at 47.318 kb on + strand, within HMPREF1078_RS16670at 47.318 kb on + strand, within HMPREF1078_RS16670at 47.318 kb on + strand, within HMPREF1078_RS16670at 47.319 kb on - strand, within HMPREF1078_RS16670at 47.319 kb on - strand, within HMPREF1078_RS16670at 47.319 kb on - strand, within HMPREF1078_RS16670at 47.319 kb on - strand, within HMPREF1078_RS16670at 47.319 kb on - strand, within HMPREF1078_RS16670at 47.395 kb on - strand, within HMPREF1078_RS16670at 47.421 kb on + strand, within HMPREF1078_RS16670at 47.422 kb on - strand, within HMPREF1078_RS16670at 47.422 kb on - strand, within HMPREF1078_RS16670at 47.431 kb on + strand, within HMPREF1078_RS16670at 47.431 kb on + strand, within HMPREF1078_RS16670at 47.432 kb on - strand, within HMPREF1078_RS16670at 47.478 kb on + strand, within HMPREF1078_RS16670at 47.483 kb on - strand, within HMPREF1078_RS16670at 47.524 kb on + strand, within HMPREF1078_RS16670at 47.524 kb on + strand, within HMPREF1078_RS16670at 47.525 kb on - strand, within HMPREF1078_RS16670at 47.525 kb on - strand, within HMPREF1078_RS16670at 47.581 kb on - strand, within HMPREF1078_RS16670at 47.581 kb on - strand, within HMPREF1078_RS16670at 47.682 kb on + strandat 47.747 kb on + strandat 47.747 kb on + strandat 47.782 kb on - strandat 47.782 kb on - strandat 47.784 kb on + strandat 47.784 kb on + strandat 47.784 kb on + strandat 47.785 kb on - strandat 47.785 kb on - strandat 47.788 kb on + strandat 47.823 kb on - strandat 47.961 kb on + strandat 48.046 kb on - strand, within HMPREF1078_RS16675at 48.061 kb on - strand, within HMPREF1078_RS16675at 48.061 kb on - strand, within HMPREF1078_RS16675at 48.112 kb on + strand, within HMPREF1078_RS16675at 48.113 kb on - strand, within HMPREF1078_RS16675at 48.113 kb on - strand, within HMPREF1078_RS16675at 48.188 kb on + strand, within HMPREF1078_RS16675at 48.189 kb on - strand, within HMPREF1078_RS16675at 48.189 kb on - strand, within HMPREF1078_RS16675at 48.189 kb on - strand, within HMPREF1078_RS16675at 48.189 kb on - strand, within HMPREF1078_RS16675at 48.317 kb on - strand, within HMPREF1078_RS16675at 48.317 kb on - strand, within HMPREF1078_RS16675at 48.317 kb on - strand, within HMPREF1078_RS16675at 48.368 kb on - strand, within HMPREF1078_RS16675at 48.402 kb on - strand, within HMPREF1078_RS16675at 48.402 kb on - strand, within HMPREF1078_RS16675at 48.477 kb on - strand, within HMPREF1078_RS16675at 48.576 kb on + strand, within HMPREF1078_RS16675at 48.580 kb on - strand, within HMPREF1078_RS16675at 48.586 kb on - strand, within HMPREF1078_RS16675at 48.704 kb on - strand, within HMPREF1078_RS16675at 48.708 kb on + strand, within HMPREF1078_RS16675at 48.808 kb on + strand, within HMPREF1078_RS16675at 48.876 kb on + strand, within HMPREF1078_RS16675at 48.902 kb on - strandat 48.988 kb on + strandat 48.994 kb on + strandat 48.994 kb on + strandat 49.000 kb on + strandat 49.008 kb on + strandat 49.096 kb on + strandat 49.111 kb on + strandat 49.111 kb on + strandat 49.156 kb on - strand, within HMPREF1078_RS16680at 49.194 kb on + strand, within HMPREF1078_RS16680at 49.216 kb on + strand, within HMPREF1078_RS16680at 49.266 kb on + strand, within HMPREF1078_RS16680at 49.268 kb on - strand, within HMPREF1078_RS16680at 49.268 kb on - strand, within HMPREF1078_RS16680at 49.269 kb on + strand, within HMPREF1078_RS16680at 49.276 kb on + strand, within HMPREF1078_RS16680at 49.277 kb on - strand, within HMPREF1078_RS16680at 49.277 kb on - strand, within HMPREF1078_RS16680at 49.277 kb on - strand, within HMPREF1078_RS16680at 49.311 kb on + strand, within HMPREF1078_RS16680at 49.324 kb on - strand, within HMPREF1078_RS16680at 49.324 kb on - strand, within HMPREF1078_RS16680at 49.401 kb on + strand, within HMPREF1078_RS16680at 49.401 kb on + strand, within HMPREF1078_RS16680at 49.401 kb on + strand, within HMPREF1078_RS16680at 49.402 kb on - strand, within HMPREF1078_RS16680at 49.468 kb on + strand, within HMPREF1078_RS16680at 49.468 kb on + strand, within HMPREF1078_RS16680at 49.492 kb on + strand, within HMPREF1078_RS16680at 49.561 kb on - strand, within HMPREF1078_RS16680at 49.570 kb on + strand, within HMPREF1078_RS16680at 49.571 kb on + strand, within HMPREF1078_RS16680at 49.571 kb on - strand, within HMPREF1078_RS16680at 49.571 kb on - strand, within HMPREF1078_RS16680at 49.571 kb on - strand, within HMPREF1078_RS16680at 49.634 kb on - strand, within HMPREF1078_RS16680at 49.648 kb on + strand, within HMPREF1078_RS16680at 49.649 kb on - strand, within HMPREF1078_RS16680at 49.651 kb on - strand, within HMPREF1078_RS16680at 49.697 kb on + strand, within HMPREF1078_RS16680at 49.697 kb on + strand, within HMPREF1078_RS16680at 49.697 kb on + strand, within HMPREF1078_RS16680at 49.698 kb on - strand, within HMPREF1078_RS16680at 49.705 kb on - strand, within HMPREF1078_RS16680at 49.728 kb on - strand, within HMPREF1078_RS16680at 49.841 kb on + strandat 49.865 kb on + strandat 49.866 kb on - strandat 49.866 kb on - strandat 49.887 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG 10 mg/mL (C)
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46,969 - HMPREF1078_RS16670 0.31 -1.5
46,976 + HMPREF1078_RS16670 0.32 +0.2
47,062 - HMPREF1078_RS16670 0.39 +0.2
47,064 + HMPREF1078_RS16670 0.39 +1.7
47,068 + HMPREF1078_RS16670 0.39 +0.1
47,069 - HMPREF1078_RS16670 0.39 -0.3
47,069 - HMPREF1078_RS16670 0.39 -1.5
47,069 - HMPREF1078_RS16670 0.39 +1.2
47,092 - HMPREF1078_RS16670 0.41 -0.8
47,148 + HMPREF1078_RS16670 0.46 +0.5
47,148 + HMPREF1078_RS16670 0.46 +0.4
47,148 + HMPREF1078_RS16670 0.46 -1.1
47,236 + HMPREF1078_RS16670 0.54 +0.0
47,237 - HMPREF1078_RS16670 0.54 +0.1
47,305 - HMPREF1078_RS16670 0.60 -1.5
47,318 + HMPREF1078_RS16670 0.61 +1.4
47,318 + HMPREF1078_RS16670 0.61 -2.5
47,318 + HMPREF1078_RS16670 0.61 +2.4
47,319 - HMPREF1078_RS16670 0.61 +0.4
47,319 - HMPREF1078_RS16670 0.61 -0.2
47,319 - HMPREF1078_RS16670 0.61 +1.7
47,319 - HMPREF1078_RS16670 0.61 -2.4
47,319 - HMPREF1078_RS16670 0.61 -0.0
47,395 - HMPREF1078_RS16670 0.67 -0.4
47,421 + HMPREF1078_RS16670 0.70 -0.1
47,422 - HMPREF1078_RS16670 0.70 +1.1
47,422 - HMPREF1078_RS16670 0.70 -0.1
47,431 + HMPREF1078_RS16670 0.70 -0.2
47,431 + HMPREF1078_RS16670 0.70 -0.3
47,432 - HMPREF1078_RS16670 0.71 +0.0
47,478 + HMPREF1078_RS16670 0.74 +1.6
47,483 - HMPREF1078_RS16670 0.75 -0.4
47,524 + HMPREF1078_RS16670 0.78 -0.6
47,524 + HMPREF1078_RS16670 0.78 -0.6
47,525 - HMPREF1078_RS16670 0.78 +0.5
47,525 - HMPREF1078_RS16670 0.78 -1.6
47,581 - HMPREF1078_RS16670 0.83 +0.9
47,581 - HMPREF1078_RS16670 0.83 +0.4
47,682 + +0.4
47,747 + +1.5
47,747 + -0.7
47,782 - -0.8
47,782 - +0.9
47,784 + +0.3
47,784 + -0.8
47,784 + -2.0
47,785 - -0.9
47,785 - +0.4
47,788 + -1.5
47,823 - -0.4
47,961 + -4.2
48,046 - HMPREF1078_RS16675 0.10 -2.8
48,061 - HMPREF1078_RS16675 0.12 -4.1
48,061 - HMPREF1078_RS16675 0.12 -1.7
48,112 + HMPREF1078_RS16675 0.17 -3.5
48,113 - HMPREF1078_RS16675 0.17 -3.3
48,113 - HMPREF1078_RS16675 0.17 -3.8
48,188 + HMPREF1078_RS16675 0.24 -3.3
48,189 - HMPREF1078_RS16675 0.24 -1.9
48,189 - HMPREF1078_RS16675 0.24 -3.7
48,189 - HMPREF1078_RS16675 0.24 -4.1
48,189 - HMPREF1078_RS16675 0.24 -4.4
48,317 - HMPREF1078_RS16675 0.36 -1.5
48,317 - HMPREF1078_RS16675 0.36 -3.2
48,317 - HMPREF1078_RS16675 0.36 -3.3
48,368 - HMPREF1078_RS16675 0.41 -3.8
48,402 - HMPREF1078_RS16675 0.44 -1.8
48,402 - HMPREF1078_RS16675 0.44 -3.5
48,477 - HMPREF1078_RS16675 0.52 -3.2
48,576 + HMPREF1078_RS16675 0.61 -2.4
48,580 - HMPREF1078_RS16675 0.61 -4.0
48,586 - HMPREF1078_RS16675 0.62 -4.3
48,704 - HMPREF1078_RS16675 0.73 -3.4
48,708 + HMPREF1078_RS16675 0.74 +0.4
48,808 + HMPREF1078_RS16675 0.83 -0.7
48,876 + HMPREF1078_RS16675 0.90 -4.6
48,902 - -4.3
48,988 + -3.1
48,994 + -1.3
48,994 + -2.7
49,000 + -1.3
49,008 + -3.2
49,096 + -5.1
49,111 + -2.4
49,111 + -3.0
49,156 - HMPREF1078_RS16680 0.12 -0.1
49,194 + HMPREF1078_RS16680 0.17 -1.9
49,216 + HMPREF1078_RS16680 0.20 -1.8
49,266 + HMPREF1078_RS16680 0.27 +0.0
49,268 - HMPREF1078_RS16680 0.27 +0.9
49,268 - HMPREF1078_RS16680 0.27 +0.6
49,269 + HMPREF1078_RS16680 0.27 -2.4
49,276 + HMPREF1078_RS16680 0.28 -3.2
49,277 - HMPREF1078_RS16680 0.28 +0.0
49,277 - HMPREF1078_RS16680 0.28 -0.0
49,277 - HMPREF1078_RS16680 0.28 -1.6
49,311 + HMPREF1078_RS16680 0.33 -3.3
49,324 - HMPREF1078_RS16680 0.35 +0.1
49,324 - HMPREF1078_RS16680 0.35 +0.0
49,401 + HMPREF1078_RS16680 0.45 -2.8
49,401 + HMPREF1078_RS16680 0.45 -4.9
49,401 + HMPREF1078_RS16680 0.45 -3.5
49,402 - HMPREF1078_RS16680 0.45 -2.2
49,468 + HMPREF1078_RS16680 0.54 -1.1
49,468 + HMPREF1078_RS16680 0.54 -3.7
49,492 + HMPREF1078_RS16680 0.58 -3.5
49,561 - HMPREF1078_RS16680 0.67 -1.2
49,570 + HMPREF1078_RS16680 0.68 -2.6
49,571 + HMPREF1078_RS16680 0.68 -3.1
49,571 - HMPREF1078_RS16680 0.68 +0.1
49,571 - HMPREF1078_RS16680 0.68 +1.8
49,571 - HMPREF1078_RS16680 0.68 +0.6
49,634 - HMPREF1078_RS16680 0.77 +0.0
49,648 + HMPREF1078_RS16680 0.79 -3.6
49,649 - HMPREF1078_RS16680 0.79 +0.9
49,651 - HMPREF1078_RS16680 0.79 +0.3
49,697 + HMPREF1078_RS16680 0.85 -1.9
49,697 + HMPREF1078_RS16680 0.85 -2.4
49,697 + HMPREF1078_RS16680 0.85 -3.3
49,698 - HMPREF1078_RS16680 0.86 -1.2
49,705 - HMPREF1078_RS16680 0.86 +1.1
49,728 - HMPREF1078_RS16680 0.90 -2.3
49,841 + -3.5
49,865 + -2.6
49,866 - +1.2
49,866 - +1.1
49,887 - -0.9

Or see this region's nucleotide sequence