Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS15705

Experiment: NAG 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS15700 and HMPREF1078_RS15705 are separated by 12 nucleotidesHMPREF1078_RS15705 and HMPREF1078_RS15710 are separated by 38 nucleotides HMPREF1078_RS15700: HMPREF1078_RS15700 - efflux RND transporter permease subunit, at 253,490 to 256,618 _RS15700 HMPREF1078_RS15705: HMPREF1078_RS15705 - efflux RND transporter periplasmic adaptor subunit, at 256,631 to 257,656 _RS15705 HMPREF1078_RS15710: HMPREF1078_RS15710 - TolC family protein, at 257,695 to 259,077 _RS15710 Position (kb) 256 257 258Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 255.658 kb on + strand, within HMPREF1078_RS15700at 255.675 kb on - strand, within HMPREF1078_RS15700at 255.730 kb on - strand, within HMPREF1078_RS15700at 255.800 kb on - strand, within HMPREF1078_RS15700at 255.861 kb on + strand, within HMPREF1078_RS15700at 255.862 kb on - strand, within HMPREF1078_RS15700at 255.865 kb on + strand, within HMPREF1078_RS15700at 255.865 kb on + strand, within HMPREF1078_RS15700at 255.865 kb on + strand, within HMPREF1078_RS15700at 255.866 kb on - strand, within HMPREF1078_RS15700at 255.866 kb on - strand, within HMPREF1078_RS15700at 255.866 kb on - strand, within HMPREF1078_RS15700at 255.932 kb on + strand, within HMPREF1078_RS15700at 256.035 kb on + strand, within HMPREF1078_RS15700at 256.050 kb on + strand, within HMPREF1078_RS15700at 256.050 kb on + strand, within HMPREF1078_RS15700at 256.070 kb on + strand, within HMPREF1078_RS15700at 256.070 kb on + strand, within HMPREF1078_RS15700at 256.071 kb on - strand, within HMPREF1078_RS15700at 256.071 kb on - strand, within HMPREF1078_RS15700at 256.161 kb on + strand, within HMPREF1078_RS15700at 256.161 kb on + strand, within HMPREF1078_RS15700at 256.212 kb on - strand, within HMPREF1078_RS15700at 256.238 kb on - strand, within HMPREF1078_RS15700at 256.330 kb on - strandat 256.340 kb on + strandat 256.340 kb on + strandat 256.608 kb on + strandat 256.609 kb on - strandat 256.610 kb on + strandat 256.611 kb on - strandat 256.611 kb on - strandat 256.611 kb on - strandat 256.683 kb on - strandat 256.686 kb on - strandat 256.725 kb on + strandat 256.726 kb on - strandat 256.726 kb on - strandat 256.786 kb on - strand, within HMPREF1078_RS15705at 256.791 kb on + strand, within HMPREF1078_RS15705at 256.791 kb on + strand, within HMPREF1078_RS15705at 256.791 kb on + strand, within HMPREF1078_RS15705at 256.791 kb on + strand, within HMPREF1078_RS15705at 256.791 kb on + strand, within HMPREF1078_RS15705at 256.792 kb on - strand, within HMPREF1078_RS15705at 256.793 kb on + strand, within HMPREF1078_RS15705at 256.793 kb on + strand, within HMPREF1078_RS15705at 256.793 kb on + strand, within HMPREF1078_RS15705at 256.793 kb on + strand, within HMPREF1078_RS15705at 256.794 kb on - strand, within HMPREF1078_RS15705at 256.794 kb on - strand, within HMPREF1078_RS15705at 256.794 kb on - strand, within HMPREF1078_RS15705at 256.794 kb on - strand, within HMPREF1078_RS15705at 256.794 kb on - strand, within HMPREF1078_RS15705at 256.795 kb on + strand, within HMPREF1078_RS15705at 256.796 kb on - strand, within HMPREF1078_RS15705at 257.012 kb on + strand, within HMPREF1078_RS15705at 257.012 kb on + strand, within HMPREF1078_RS15705at 257.013 kb on - strand, within HMPREF1078_RS15705at 257.108 kb on + strand, within HMPREF1078_RS15705at 257.135 kb on - strand, within HMPREF1078_RS15705at 257.136 kb on + strand, within HMPREF1078_RS15705at 257.136 kb on + strand, within HMPREF1078_RS15705at 257.136 kb on + strand, within HMPREF1078_RS15705at 257.137 kb on - strand, within HMPREF1078_RS15705at 257.137 kb on - strand, within HMPREF1078_RS15705at 257.137 kb on - strand, within HMPREF1078_RS15705at 257.137 kb on - strand, within HMPREF1078_RS15705at 257.137 kb on - strand, within HMPREF1078_RS15705at 257.137 kb on - strand, within HMPREF1078_RS15705at 257.137 kb on - strand, within HMPREF1078_RS15705at 257.137 kb on - strand, within HMPREF1078_RS15705at 257.137 kb on - strand, within HMPREF1078_RS15705at 257.193 kb on - strand, within HMPREF1078_RS15705at 257.193 kb on - strand, within HMPREF1078_RS15705at 257.193 kb on - strand, within HMPREF1078_RS15705at 257.193 kb on - strand, within HMPREF1078_RS15705at 257.234 kb on + strand, within HMPREF1078_RS15705at 257.292 kb on + strand, within HMPREF1078_RS15705at 257.306 kb on - strand, within HMPREF1078_RS15705at 257.397 kb on - strand, within HMPREF1078_RS15705at 257.397 kb on - strand, within HMPREF1078_RS15705at 257.458 kb on + strand, within HMPREF1078_RS15705at 257.478 kb on - strand, within HMPREF1078_RS15705at 257.488 kb on + strand, within HMPREF1078_RS15705at 257.530 kb on - strand, within HMPREF1078_RS15705at 257.630 kb on - strandat 257.645 kb on - strandat 257.716 kb on + strandat 257.717 kb on - strandat 257.741 kb on - strandat 257.745 kb on + strandat 257.745 kb on + strandat 257.745 kb on + strandat 257.746 kb on - strandat 257.746 kb on - strandat 257.746 kb on - strandat 257.747 kb on + strandat 257.748 kb on - strandat 257.859 kb on + strand, within HMPREF1078_RS15710at 257.859 kb on + strand, within HMPREF1078_RS15710at 257.859 kb on + strand, within HMPREF1078_RS15710at 257.859 kb on + strand, within HMPREF1078_RS15710at 257.859 kb on + strand, within HMPREF1078_RS15710at 257.860 kb on - strand, within HMPREF1078_RS15710at 257.860 kb on - strand, within HMPREF1078_RS15710at 257.860 kb on - strand, within HMPREF1078_RS15710at 257.862 kb on - strand, within HMPREF1078_RS15710at 257.920 kb on - strand, within HMPREF1078_RS15710at 257.925 kb on + strand, within HMPREF1078_RS15710at 257.926 kb on - strand, within HMPREF1078_RS15710at 257.928 kb on + strand, within HMPREF1078_RS15710at 257.928 kb on + strand, within HMPREF1078_RS15710at 257.929 kb on - strand, within HMPREF1078_RS15710at 257.933 kb on - strand, within HMPREF1078_RS15710at 257.934 kb on + strand, within HMPREF1078_RS15710at 257.935 kb on - strand, within HMPREF1078_RS15710at 257.936 kb on + strand, within HMPREF1078_RS15710at 257.936 kb on + strand, within HMPREF1078_RS15710at 257.970 kb on + strand, within HMPREF1078_RS15710at 258.024 kb on + strand, within HMPREF1078_RS15710at 258.027 kb on - strand, within HMPREF1078_RS15710at 258.051 kb on + strand, within HMPREF1078_RS15710at 258.052 kb on - strand, within HMPREF1078_RS15710at 258.068 kb on - strand, within HMPREF1078_RS15710at 258.096 kb on + strand, within HMPREF1078_RS15710at 258.097 kb on - strand, within HMPREF1078_RS15710at 258.098 kb on + strand, within HMPREF1078_RS15710at 258.098 kb on + strand, within HMPREF1078_RS15710at 258.099 kb on - strand, within HMPREF1078_RS15710at 258.142 kb on + strand, within HMPREF1078_RS15710at 258.143 kb on - strand, within HMPREF1078_RS15710at 258.243 kb on + strand, within HMPREF1078_RS15710at 258.244 kb on - strand, within HMPREF1078_RS15710at 258.244 kb on - strand, within HMPREF1078_RS15710at 258.284 kb on - strand, within HMPREF1078_RS15710at 258.324 kb on + strand, within HMPREF1078_RS15710at 258.328 kb on + strand, within HMPREF1078_RS15710at 258.328 kb on + strand, within HMPREF1078_RS15710at 258.329 kb on - strand, within HMPREF1078_RS15710at 258.329 kb on - strand, within HMPREF1078_RS15710at 258.347 kb on - strand, within HMPREF1078_RS15710at 258.347 kb on - strand, within HMPREF1078_RS15710at 258.350 kb on - strand, within HMPREF1078_RS15710at 258.478 kb on - strand, within HMPREF1078_RS15710at 258.566 kb on + strand, within HMPREF1078_RS15710at 258.577 kb on + strand, within HMPREF1078_RS15710at 258.652 kb on + strand, within HMPREF1078_RS15710at 258.653 kb on - strand, within HMPREF1078_RS15710

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG 10 mg/mL (C)
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255,658 + HMPREF1078_RS15700 0.69 -0.5
255,675 - HMPREF1078_RS15700 0.70 -0.1
255,730 - HMPREF1078_RS15700 0.72 -0.8
255,800 - HMPREF1078_RS15700 0.74 -3.1
255,861 + HMPREF1078_RS15700 0.76 +1.3
255,862 - HMPREF1078_RS15700 0.76 +0.4
255,865 + HMPREF1078_RS15700 0.76 -0.6
255,865 + HMPREF1078_RS15700 0.76 +1.1
255,865 + HMPREF1078_RS15700 0.76 -1.1
255,866 - HMPREF1078_RS15700 0.76 -0.4
255,866 - HMPREF1078_RS15700 0.76 +0.2
255,866 - HMPREF1078_RS15700 0.76 -1.5
255,932 + HMPREF1078_RS15700 0.78 +0.9
256,035 + HMPREF1078_RS15700 0.81 +1.7
256,050 + HMPREF1078_RS15700 0.82 -0.5
256,050 + HMPREF1078_RS15700 0.82 -2.6
256,070 + HMPREF1078_RS15700 0.82 -1.2
256,070 + HMPREF1078_RS15700 0.82 -0.2
256,071 - HMPREF1078_RS15700 0.82 -5.7
256,071 - HMPREF1078_RS15700 0.82 -0.1
256,161 + HMPREF1078_RS15700 0.85 -2.5
256,161 + HMPREF1078_RS15700 0.85 -0.1
256,212 - HMPREF1078_RS15700 0.87 +0.7
256,238 - HMPREF1078_RS15700 0.88 +0.6
256,330 - -0.6
256,340 + -0.9
256,340 + -0.4
256,608 + -1.4
256,609 - +0.4
256,610 + -1.7
256,611 - +1.1
256,611 - +0.0
256,611 - -0.2
256,683 - +0.3
256,686 - -1.5
256,725 + +0.3
256,726 - +0.2
256,726 - +1.2
256,786 - HMPREF1078_RS15705 0.15 +0.6
256,791 + HMPREF1078_RS15705 0.16 +1.4
256,791 + HMPREF1078_RS15705 0.16 +1.0
256,791 + HMPREF1078_RS15705 0.16 +1.5
256,791 + HMPREF1078_RS15705 0.16 +0.3
256,791 + HMPREF1078_RS15705 0.16 +0.4
256,792 - HMPREF1078_RS15705 0.16 +0.0
256,793 + HMPREF1078_RS15705 0.16 +0.2
256,793 + HMPREF1078_RS15705 0.16 -1.9
256,793 + HMPREF1078_RS15705 0.16 -0.8
256,793 + HMPREF1078_RS15705 0.16 -4.1
256,794 - HMPREF1078_RS15705 0.16 -0.8
256,794 - HMPREF1078_RS15705 0.16 +0.3
256,794 - HMPREF1078_RS15705 0.16 -0.5
256,794 - HMPREF1078_RS15705 0.16 -0.4
256,794 - HMPREF1078_RS15705 0.16 -0.5
256,795 + HMPREF1078_RS15705 0.16 +0.1
256,796 - HMPREF1078_RS15705 0.16 +0.7
257,012 + HMPREF1078_RS15705 0.37 -0.2
257,012 + HMPREF1078_RS15705 0.37 +0.4
257,013 - HMPREF1078_RS15705 0.37 -0.9
257,108 + HMPREF1078_RS15705 0.46 -0.6
257,135 - HMPREF1078_RS15705 0.49 +1.1
257,136 + HMPREF1078_RS15705 0.49 -1.0
257,136 + HMPREF1078_RS15705 0.49 -1.1
257,136 + HMPREF1078_RS15705 0.49 -1.2
257,137 - HMPREF1078_RS15705 0.49 +1.0
257,137 - HMPREF1078_RS15705 0.49 -1.3
257,137 - HMPREF1078_RS15705 0.49 -1.9
257,137 - HMPREF1078_RS15705 0.49 -0.2
257,137 - HMPREF1078_RS15705 0.49 -0.3
257,137 - HMPREF1078_RS15705 0.49 +1.7
257,137 - HMPREF1078_RS15705 0.49 +1.1
257,137 - HMPREF1078_RS15705 0.49 +1.1
257,137 - HMPREF1078_RS15705 0.49 +0.7
257,193 - HMPREF1078_RS15705 0.55 +2.2
257,193 - HMPREF1078_RS15705 0.55 -0.4
257,193 - HMPREF1078_RS15705 0.55 -2.5
257,193 - HMPREF1078_RS15705 0.55 +0.3
257,234 + HMPREF1078_RS15705 0.59 +2.0
257,292 + HMPREF1078_RS15705 0.64 +0.6
257,306 - HMPREF1078_RS15705 0.66 -0.2
257,397 - HMPREF1078_RS15705 0.75 +0.1
257,397 - HMPREF1078_RS15705 0.75 +1.0
257,458 + HMPREF1078_RS15705 0.81 -1.9
257,478 - HMPREF1078_RS15705 0.83 -0.6
257,488 + HMPREF1078_RS15705 0.84 -4.2
257,530 - HMPREF1078_RS15705 0.88 +0.1
257,630 - -1.7
257,645 - -0.2
257,716 + -1.8
257,717 - -0.6
257,741 - +1.6
257,745 + +0.7
257,745 + -0.3
257,745 + -0.8
257,746 - +1.7
257,746 - -3.1
257,746 - +2.0
257,747 + +0.2
257,748 - -1.8
257,859 + HMPREF1078_RS15710 0.12 -1.2
257,859 + HMPREF1078_RS15710 0.12 -0.2
257,859 + HMPREF1078_RS15710 0.12 -0.6
257,859 + HMPREF1078_RS15710 0.12 +0.2
257,859 + HMPREF1078_RS15710 0.12 -0.9
257,860 - HMPREF1078_RS15710 0.12 -0.6
257,860 - HMPREF1078_RS15710 0.12 +0.0
257,860 - HMPREF1078_RS15710 0.12 -0.9
257,862 - HMPREF1078_RS15710 0.12 +0.5
257,920 - HMPREF1078_RS15710 0.16 +1.4
257,925 + HMPREF1078_RS15710 0.17 -2.9
257,926 - HMPREF1078_RS15710 0.17 -1.0
257,928 + HMPREF1078_RS15710 0.17 +0.4
257,928 + HMPREF1078_RS15710 0.17 +0.3
257,929 - HMPREF1078_RS15710 0.17 -1.1
257,933 - HMPREF1078_RS15710 0.17 -1.5
257,934 + HMPREF1078_RS15710 0.17 +1.5
257,935 - HMPREF1078_RS15710 0.17 +0.3
257,936 + HMPREF1078_RS15710 0.17 +0.3
257,936 + HMPREF1078_RS15710 0.17 +1.5
257,970 + HMPREF1078_RS15710 0.20 -1.7
258,024 + HMPREF1078_RS15710 0.24 -0.2
258,027 - HMPREF1078_RS15710 0.24 -0.6
258,051 + HMPREF1078_RS15710 0.26 -0.1
258,052 - HMPREF1078_RS15710 0.26 -1.4
258,068 - HMPREF1078_RS15710 0.27 +1.0
258,096 + HMPREF1078_RS15710 0.29 -1.5
258,097 - HMPREF1078_RS15710 0.29 -2.4
258,098 + HMPREF1078_RS15710 0.29 -0.4
258,098 + HMPREF1078_RS15710 0.29 +0.1
258,099 - HMPREF1078_RS15710 0.29 +0.5
258,142 + HMPREF1078_RS15710 0.32 -1.5
258,143 - HMPREF1078_RS15710 0.32 -2.0
258,243 + HMPREF1078_RS15710 0.40 -2.3
258,244 - HMPREF1078_RS15710 0.40 -1.6
258,244 - HMPREF1078_RS15710 0.40 -0.0
258,284 - HMPREF1078_RS15710 0.43 +0.5
258,324 + HMPREF1078_RS15710 0.45 +0.3
258,328 + HMPREF1078_RS15710 0.46 -1.8
258,328 + HMPREF1078_RS15710 0.46 -0.3
258,329 - HMPREF1078_RS15710 0.46 +1.3
258,329 - HMPREF1078_RS15710 0.46 -1.7
258,347 - HMPREF1078_RS15710 0.47 -1.2
258,347 - HMPREF1078_RS15710 0.47 -1.0
258,350 - HMPREF1078_RS15710 0.47 +1.8
258,478 - HMPREF1078_RS15710 0.57 +1.1
258,566 + HMPREF1078_RS15710 0.63 -1.1
258,577 + HMPREF1078_RS15710 0.64 -1.2
258,652 + HMPREF1078_RS15710 0.69 -1.2
258,653 - HMPREF1078_RS15710 0.69 -1.9

Or see this region's nucleotide sequence