Experiment: NAG 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15250 and HMPREF1078_RS15255 are separated by 11 nucleotides HMPREF1078_RS15255 and HMPREF1078_RS15260 are separated by 15 nucleotides HMPREF1078_RS15260 and HMPREF1078_RS15265 are separated by 5 nucleotides
HMPREF1078_RS15250: HMPREF1078_RS15250 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 135,021 to 136,325
_RS15250
HMPREF1078_RS15255: HMPREF1078_RS15255 - ribosome maturation factor RimM, at 136,337 to 136,858
_RS15255
HMPREF1078_RS15260: HMPREF1078_RS15260 - M23 family metallopeptidase, at 136,874 to 137,746
_RS15260
HMPREF1078_RS15265: HMPREF1078_RS15265 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 137,752 to 138,903
_RS15265
Position (kb) 136
137
138 Strain fitness (log2 ratio) -2
-1
0
1
2 at 136.313 kb on + strand at 136.453 kb on + strand, within HMPREF1078_RS15255 at 136.453 kb on + strand, within HMPREF1078_RS15255 at 136.453 kb on + strand, within HMPREF1078_RS15255 at 136.456 kb on + strand, within HMPREF1078_RS15255 at 136.456 kb on + strand, within HMPREF1078_RS15255 at 136.456 kb on + strand, within HMPREF1078_RS15255 at 136.456 kb on + strand, within HMPREF1078_RS15255 at 136.456 kb on + strand, within HMPREF1078_RS15255 at 136.456 kb on + strand, within HMPREF1078_RS15255 at 136.510 kb on + strand, within HMPREF1078_RS15255 at 136.510 kb on + strand, within HMPREF1078_RS15255 at 136.636 kb on + strand, within HMPREF1078_RS15255 at 136.671 kb on + strand, within HMPREF1078_RS15255 at 136.671 kb on + strand, within HMPREF1078_RS15255 at 136.702 kb on + strand, within HMPREF1078_RS15255 at 136.813 kb on + strand at 136.869 kb on + strand at 136.924 kb on + strand at 136.934 kb on + strand at 136.974 kb on + strand, within HMPREF1078_RS15260 at 136.974 kb on + strand, within HMPREF1078_RS15260 at 137.056 kb on + strand, within HMPREF1078_RS15260 at 137.172 kb on + strand, within HMPREF1078_RS15260 at 137.179 kb on + strand, within HMPREF1078_RS15260 at 137.191 kb on + strand, within HMPREF1078_RS15260 at 137.400 kb on + strand, within HMPREF1078_RS15260 at 137.400 kb on + strand, within HMPREF1078_RS15260 at 137.400 kb on + strand, within HMPREF1078_RS15260 at 137.423 kb on + strand, within HMPREF1078_RS15260 at 137.425 kb on + strand, within HMPREF1078_RS15260 at 137.444 kb on + strand, within HMPREF1078_RS15260 at 137.557 kb on + strand, within HMPREF1078_RS15260 at 137.581 kb on + strand, within HMPREF1078_RS15260 at 137.581 kb on + strand, within HMPREF1078_RS15260 at 137.581 kb on + strand, within HMPREF1078_RS15260 at 137.587 kb on + strand, within HMPREF1078_RS15260 at 137.649 kb on + strand, within HMPREF1078_RS15260 at 137.656 kb on + strand, within HMPREF1078_RS15260 at 137.702 kb on + strand at 137.732 kb on + strand at 137.732 kb on + strand at 137.732 kb on + strand at 137.734 kb on + strand at 137.736 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 10 mg/mL (C) remove 136,313 + -0.1 136,453 + HMPREF1078_RS15255 0.22 +0.3 136,453 + HMPREF1078_RS15255 0.22 -0.3 136,453 + HMPREF1078_RS15255 0.22 +0.8 136,456 + HMPREF1078_RS15255 0.23 +1.6 136,456 + HMPREF1078_RS15255 0.23 -0.4 136,456 + HMPREF1078_RS15255 0.23 +1.0 136,456 + HMPREF1078_RS15255 0.23 +0.9 136,456 + HMPREF1078_RS15255 0.23 +0.7 136,456 + HMPREF1078_RS15255 0.23 -0.7 136,510 + HMPREF1078_RS15255 0.33 -0.4 136,510 + HMPREF1078_RS15255 0.33 -0.4 136,636 + HMPREF1078_RS15255 0.57 -1.5 136,671 + HMPREF1078_RS15255 0.64 -0.3 136,671 + HMPREF1078_RS15255 0.64 -1.8 136,702 + HMPREF1078_RS15255 0.70 +2.4 136,813 + -2.1 136,869 + -0.6 136,924 + +0.2 136,934 + -1.3 136,974 + HMPREF1078_RS15260 0.11 +0.7 136,974 + HMPREF1078_RS15260 0.11 -0.8 137,056 + HMPREF1078_RS15260 0.21 -1.2 137,172 + HMPREF1078_RS15260 0.34 -0.5 137,179 + HMPREF1078_RS15260 0.35 -1.9 137,191 + HMPREF1078_RS15260 0.36 -1.1 137,400 + HMPREF1078_RS15260 0.60 -1.9 137,400 + HMPREF1078_RS15260 0.60 -0.3 137,400 + HMPREF1078_RS15260 0.60 -1.8 137,423 + HMPREF1078_RS15260 0.63 -0.4 137,425 + HMPREF1078_RS15260 0.63 -0.1 137,444 + HMPREF1078_RS15260 0.65 -0.4 137,557 + HMPREF1078_RS15260 0.78 -1.9 137,581 + HMPREF1078_RS15260 0.81 -1.7 137,581 + HMPREF1078_RS15260 0.81 -2.2 137,581 + HMPREF1078_RS15260 0.81 -2.7 137,587 + HMPREF1078_RS15260 0.82 -2.0 137,649 + HMPREF1078_RS15260 0.89 -1.8 137,656 + HMPREF1078_RS15260 0.90 -1.1 137,702 + +1.3 137,732 + -1.7 137,732 + -0.7 137,732 + +0.0 137,734 + -0.4 137,736 + -0.5
Or see this region's nucleotide sequence