Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS14545

Experiment: NAG 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS14540 and HMPREF1078_RS14545 are separated by 312 nucleotidesHMPREF1078_RS14545 and HMPREF1078_RS14550 are separated by 8 nucleotidesHMPREF1078_RS14550 and HMPREF1078_RS14555 are separated by 7 nucleotides HMPREF1078_RS14540: HMPREF1078_RS14540 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 408,269 to 409,369 _RS14540 HMPREF1078_RS14545: HMPREF1078_RS14545 - adenylyltransferase/cytidyltransferase family protein, at 409,682 to 410,152 _RS14545 HMPREF1078_RS14550: HMPREF1078_RS14550 - SDR family oxidoreductase, at 410,161 to 410,889 _RS14550 HMPREF1078_RS14555: HMPREF1078_RS14555 - CDP-alcohol phosphatidyltransferase family protein, at 410,897 to 411,784 _RS14555 Position (kb) 409 410 411Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 408.752 kb on - strand, within HMPREF1078_RS14540at 408.752 kb on - strand, within HMPREF1078_RS14540at 408.781 kb on + strand, within HMPREF1078_RS14540at 408.781 kb on + strand, within HMPREF1078_RS14540at 408.781 kb on + strand, within HMPREF1078_RS14540at 408.781 kb on + strand, within HMPREF1078_RS14540at 408.782 kb on - strand, within HMPREF1078_RS14540at 408.824 kb on - strand, within HMPREF1078_RS14540at 408.824 kb on - strand, within HMPREF1078_RS14540at 408.859 kb on + strand, within HMPREF1078_RS14540at 408.859 kb on + strand, within HMPREF1078_RS14540at 408.889 kb on + strand, within HMPREF1078_RS14540at 408.891 kb on + strand, within HMPREF1078_RS14540at 408.891 kb on + strand, within HMPREF1078_RS14540at 408.891 kb on + strand, within HMPREF1078_RS14540at 408.891 kb on + strand, within HMPREF1078_RS14540at 408.892 kb on - strand, within HMPREF1078_RS14540at 408.936 kb on + strand, within HMPREF1078_RS14540at 408.941 kb on - strand, within HMPREF1078_RS14540at 408.941 kb on - strand, within HMPREF1078_RS14540at 408.961 kb on + strand, within HMPREF1078_RS14540at 408.962 kb on - strand, within HMPREF1078_RS14540at 408.996 kb on + strand, within HMPREF1078_RS14540at 408.996 kb on + strand, within HMPREF1078_RS14540at 408.996 kb on + strand, within HMPREF1078_RS14540at 408.996 kb on + strand, within HMPREF1078_RS14540at 408.996 kb on + strand, within HMPREF1078_RS14540at 408.997 kb on - strand, within HMPREF1078_RS14540at 408.997 kb on - strand, within HMPREF1078_RS14540at 409.013 kb on + strand, within HMPREF1078_RS14540at 409.014 kb on - strand, within HMPREF1078_RS14540at 409.014 kb on - strand, within HMPREF1078_RS14540at 409.014 kb on - strand, within HMPREF1078_RS14540at 409.047 kb on - strand, within HMPREF1078_RS14540at 409.073 kb on - strand, within HMPREF1078_RS14540at 409.076 kb on + strand, within HMPREF1078_RS14540at 409.076 kb on + strand, within HMPREF1078_RS14540at 409.076 kb on + strand, within HMPREF1078_RS14540at 409.076 kb on + strand, within HMPREF1078_RS14540at 409.077 kb on - strand, within HMPREF1078_RS14540at 409.077 kb on - strand, within HMPREF1078_RS14540at 409.102 kb on + strand, within HMPREF1078_RS14540at 409.129 kb on + strand, within HMPREF1078_RS14540at 409.133 kb on + strand, within HMPREF1078_RS14540at 409.134 kb on - strand, within HMPREF1078_RS14540at 409.134 kb on - strand, within HMPREF1078_RS14540at 409.134 kb on - strand, within HMPREF1078_RS14540at 409.146 kb on + strand, within HMPREF1078_RS14540at 409.147 kb on - strand, within HMPREF1078_RS14540at 409.156 kb on - strand, within HMPREF1078_RS14540at 409.156 kb on - strand, within HMPREF1078_RS14540at 409.184 kb on + strand, within HMPREF1078_RS14540at 409.184 kb on + strand, within HMPREF1078_RS14540at 409.184 kb on + strand, within HMPREF1078_RS14540at 409.185 kb on - strand, within HMPREF1078_RS14540at 409.185 kb on - strand, within HMPREF1078_RS14540at 409.189 kb on + strand, within HMPREF1078_RS14540at 409.190 kb on - strand, within HMPREF1078_RS14540at 409.236 kb on + strand, within HMPREF1078_RS14540at 409.236 kb on + strand, within HMPREF1078_RS14540at 409.236 kb on + strand, within HMPREF1078_RS14540at 409.237 kb on - strand, within HMPREF1078_RS14540at 409.237 kb on - strand, within HMPREF1078_RS14540at 409.238 kb on + strand, within HMPREF1078_RS14540at 409.239 kb on - strand, within HMPREF1078_RS14540at 409.239 kb on - strand, within HMPREF1078_RS14540at 409.310 kb on + strandat 409.311 kb on - strandat 409.395 kb on - strandat 409.468 kb on - strandat 409.478 kb on + strandat 409.479 kb on - strandat 409.513 kb on - strandat 409.535 kb on + strandat 409.540 kb on + strandat 409.545 kb on - strandat 409.545 kb on - strandat 409.548 kb on + strandat 409.549 kb on - strandat 409.549 kb on - strandat 409.549 kb on - strandat 409.550 kb on + strandat 409.552 kb on + strandat 409.649 kb on + strandat 409.674 kb on + strandat 409.674 kb on + strandat 409.678 kb on + strandat 409.706 kb on + strandat 409.706 kb on + strandat 409.708 kb on + strandat 409.709 kb on - strandat 409.726 kb on + strandat 409.726 kb on + strandat 409.726 kb on + strandat 409.726 kb on + strandat 409.756 kb on - strand, within HMPREF1078_RS14545at 409.801 kb on + strand, within HMPREF1078_RS14545at 409.823 kb on + strand, within HMPREF1078_RS14545at 409.849 kb on + strand, within HMPREF1078_RS14545at 409.909 kb on + strand, within HMPREF1078_RS14545at 409.909 kb on + strand, within HMPREF1078_RS14545at 409.909 kb on + strand, within HMPREF1078_RS14545at 409.909 kb on + strand, within HMPREF1078_RS14545at 409.909 kb on + strand, within HMPREF1078_RS14545at 409.909 kb on + strand, within HMPREF1078_RS14545at 409.910 kb on - strand, within HMPREF1078_RS14545at 409.910 kb on - strand, within HMPREF1078_RS14545at 409.910 kb on - strand, within HMPREF1078_RS14545at 409.985 kb on + strand, within HMPREF1078_RS14545at 409.985 kb on + strand, within HMPREF1078_RS14545at 409.985 kb on + strand, within HMPREF1078_RS14545at 409.985 kb on + strand, within HMPREF1078_RS14545at 409.992 kb on - strand, within HMPREF1078_RS14545at 410.081 kb on + strand, within HMPREF1078_RS14545at 410.081 kb on + strand, within HMPREF1078_RS14545at 410.081 kb on + strand, within HMPREF1078_RS14545at 410.081 kb on + strand, within HMPREF1078_RS14545at 410.082 kb on - strand, within HMPREF1078_RS14545at 410.082 kb on - strand, within HMPREF1078_RS14545at 410.150 kb on + strandat 410.150 kb on + strandat 410.150 kb on + strandat 410.201 kb on + strandat 410.239 kb on + strand, within HMPREF1078_RS14550at 410.239 kb on + strand, within HMPREF1078_RS14550at 410.257 kb on + strand, within HMPREF1078_RS14550at 410.257 kb on + strand, within HMPREF1078_RS14550at 410.257 kb on + strand, within HMPREF1078_RS14550at 410.311 kb on + strand, within HMPREF1078_RS14550at 410.312 kb on - strand, within HMPREF1078_RS14550at 410.329 kb on - strand, within HMPREF1078_RS14550at 410.329 kb on - strand, within HMPREF1078_RS14550at 410.372 kb on + strand, within HMPREF1078_RS14550at 410.398 kb on - strand, within HMPREF1078_RS14550at 410.398 kb on - strand, within HMPREF1078_RS14550at 410.465 kb on + strand, within HMPREF1078_RS14550at 410.465 kb on + strand, within HMPREF1078_RS14550at 410.466 kb on - strand, within HMPREF1078_RS14550at 410.466 kb on - strand, within HMPREF1078_RS14550at 410.468 kb on + strand, within HMPREF1078_RS14550at 410.468 kb on + strand, within HMPREF1078_RS14550at 410.468 kb on + strand, within HMPREF1078_RS14550at 410.468 kb on + strand, within HMPREF1078_RS14550at 410.541 kb on + strand, within HMPREF1078_RS14550at 410.545 kb on - strand, within HMPREF1078_RS14550at 410.611 kb on + strand, within HMPREF1078_RS14550at 410.652 kb on + strand, within HMPREF1078_RS14550at 410.674 kb on + strand, within HMPREF1078_RS14550at 410.754 kb on + strand, within HMPREF1078_RS14550at 410.755 kb on - strand, within HMPREF1078_RS14550at 410.757 kb on + strand, within HMPREF1078_RS14550at 410.759 kb on + strand, within HMPREF1078_RS14550at 410.760 kb on - strand, within HMPREF1078_RS14550at 410.825 kb on + strandat 410.839 kb on + strandat 410.840 kb on - strandat 410.884 kb on - strandat 410.887 kb on + strandat 410.887 kb on + strandat 410.887 kb on + strandat 410.895 kb on - strandat 410.918 kb on + strandat 410.918 kb on + strandat 410.918 kb on + strandat 410.973 kb on - strandat 411.001 kb on + strand, within HMPREF1078_RS14555at 411.001 kb on + strand, within HMPREF1078_RS14555at 411.002 kb on - strand, within HMPREF1078_RS14555at 411.019 kb on + strand, within HMPREF1078_RS14555at 411.022 kb on + strand, within HMPREF1078_RS14555at 411.022 kb on + strand, within HMPREF1078_RS14555at 411.022 kb on + strand, within HMPREF1078_RS14555at 411.023 kb on - strand, within HMPREF1078_RS14555at 411.023 kb on - strand, within HMPREF1078_RS14555at 411.031 kb on + strand, within HMPREF1078_RS14555at 411.031 kb on + strand, within HMPREF1078_RS14555at 411.032 kb on - strand, within HMPREF1078_RS14555at 411.032 kb on - strand, within HMPREF1078_RS14555at 411.032 kb on - strand, within HMPREF1078_RS14555at 411.130 kb on - strand, within HMPREF1078_RS14555

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG 10 mg/mL (C)
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408,752 - HMPREF1078_RS14540 0.44 -2.7
408,752 - HMPREF1078_RS14540 0.44 -1.1
408,781 + HMPREF1078_RS14540 0.47 -2.8
408,781 + HMPREF1078_RS14540 0.47 -0.3
408,781 + HMPREF1078_RS14540 0.47 -1.4
408,781 + HMPREF1078_RS14540 0.47 -0.4
408,782 - HMPREF1078_RS14540 0.47 -2.3
408,824 - HMPREF1078_RS14540 0.50 -0.4
408,824 - HMPREF1078_RS14540 0.50 +0.4
408,859 + HMPREF1078_RS14540 0.54 -1.6
408,859 + HMPREF1078_RS14540 0.54 -0.5
408,889 + HMPREF1078_RS14540 0.56 -1.4
408,891 + HMPREF1078_RS14540 0.56 -1.4
408,891 + HMPREF1078_RS14540 0.56 +0.8
408,891 + HMPREF1078_RS14540 0.56 -0.9
408,891 + HMPREF1078_RS14540 0.56 -2.4
408,892 - HMPREF1078_RS14540 0.57 -1.7
408,936 + HMPREF1078_RS14540 0.61 -1.5
408,941 - HMPREF1078_RS14540 0.61 -1.4
408,941 - HMPREF1078_RS14540 0.61 -0.4
408,961 + HMPREF1078_RS14540 0.63 -3.1
408,962 - HMPREF1078_RS14540 0.63 -0.4
408,996 + HMPREF1078_RS14540 0.66 -1.9
408,996 + HMPREF1078_RS14540 0.66 +0.2
408,996 + HMPREF1078_RS14540 0.66 -0.3
408,996 + HMPREF1078_RS14540 0.66 +0.1
408,996 + HMPREF1078_RS14540 0.66 -3.0
408,997 - HMPREF1078_RS14540 0.66 -1.9
408,997 - HMPREF1078_RS14540 0.66 -1.9
409,013 + HMPREF1078_RS14540 0.68 -3.7
409,014 - HMPREF1078_RS14540 0.68 +0.0
409,014 - HMPREF1078_RS14540 0.68 -1.5
409,014 - HMPREF1078_RS14540 0.68 -1.8
409,047 - HMPREF1078_RS14540 0.71 -3.4
409,073 - HMPREF1078_RS14540 0.73 -0.8
409,076 + HMPREF1078_RS14540 0.73 -3.3
409,076 + HMPREF1078_RS14540 0.73 -1.0
409,076 + HMPREF1078_RS14540 0.73 -0.3
409,076 + HMPREF1078_RS14540 0.73 -2.8
409,077 - HMPREF1078_RS14540 0.73 -1.0
409,077 - HMPREF1078_RS14540 0.73 -2.2
409,102 + HMPREF1078_RS14540 0.76 -1.1
409,129 + HMPREF1078_RS14540 0.78 -2.5
409,133 + HMPREF1078_RS14540 0.78 -2.2
409,134 - HMPREF1078_RS14540 0.79 -1.6
409,134 - HMPREF1078_RS14540 0.79 -2.3
409,134 - HMPREF1078_RS14540 0.79 -1.0
409,146 + HMPREF1078_RS14540 0.80 -1.7
409,147 - HMPREF1078_RS14540 0.80 +0.4
409,156 - HMPREF1078_RS14540 0.81 -1.4
409,156 - HMPREF1078_RS14540 0.81 +0.2
409,184 + HMPREF1078_RS14540 0.83 -1.2
409,184 + HMPREF1078_RS14540 0.83 -2.0
409,184 + HMPREF1078_RS14540 0.83 -1.5
409,185 - HMPREF1078_RS14540 0.83 -0.9
409,185 - HMPREF1078_RS14540 0.83 -0.3
409,189 + HMPREF1078_RS14540 0.84 -0.5
409,190 - HMPREF1078_RS14540 0.84 -2.5
409,236 + HMPREF1078_RS14540 0.88 -0.7
409,236 + HMPREF1078_RS14540 0.88 +0.4
409,236 + HMPREF1078_RS14540 0.88 -0.8
409,237 - HMPREF1078_RS14540 0.88 +0.2
409,237 - HMPREF1078_RS14540 0.88 -2.1
409,238 + HMPREF1078_RS14540 0.88 -1.5
409,239 - HMPREF1078_RS14540 0.88 -1.0
409,239 - HMPREF1078_RS14540 0.88 +0.8
409,310 + +1.2
409,311 - +0.3
409,395 - -1.3
409,468 - -0.7
409,478 + +0.7
409,479 - +0.6
409,513 - +0.3
409,535 + -0.8
409,540 + +1.3
409,545 - -0.2
409,545 - -0.4
409,548 + -0.0
409,549 - -0.5
409,549 - +0.1
409,549 - +1.3
409,550 + -1.2
409,552 + +0.6
409,649 + +1.8
409,674 + +2.9
409,674 + +0.1
409,678 + +0.9
409,706 + +1.3
409,706 + +1.4
409,708 + +1.5
409,709 - +0.8
409,726 + +1.8
409,726 + +2.0
409,726 + +0.9
409,726 + +2.1
409,756 - HMPREF1078_RS14545 0.16 +0.4
409,801 + HMPREF1078_RS14545 0.25 -0.8
409,823 + HMPREF1078_RS14545 0.30 +1.7
409,849 + HMPREF1078_RS14545 0.35 +1.2
409,909 + HMPREF1078_RS14545 0.48 +2.1
409,909 + HMPREF1078_RS14545 0.48 -0.4
409,909 + HMPREF1078_RS14545 0.48 +1.1
409,909 + HMPREF1078_RS14545 0.48 +0.4
409,909 + HMPREF1078_RS14545 0.48 +1.8
409,909 + HMPREF1078_RS14545 0.48 +1.6
409,910 - HMPREF1078_RS14545 0.48 -1.7
409,910 - HMPREF1078_RS14545 0.48 +0.4
409,910 - HMPREF1078_RS14545 0.48 -0.2
409,985 + HMPREF1078_RS14545 0.64 +2.8
409,985 + HMPREF1078_RS14545 0.64 +1.2
409,985 + HMPREF1078_RS14545 0.64 +1.7
409,985 + HMPREF1078_RS14545 0.64 +2.6
409,992 - HMPREF1078_RS14545 0.66 -0.6
410,081 + HMPREF1078_RS14545 0.85 +0.8
410,081 + HMPREF1078_RS14545 0.85 +0.8
410,081 + HMPREF1078_RS14545 0.85 +2.3
410,081 + HMPREF1078_RS14545 0.85 +0.5
410,082 - HMPREF1078_RS14545 0.85 -1.1
410,082 - HMPREF1078_RS14545 0.85 +1.4
410,150 + +0.6
410,150 + +1.6
410,150 + +0.6
410,201 + +1.3
410,239 + HMPREF1078_RS14550 0.11 +1.3
410,239 + HMPREF1078_RS14550 0.11 +0.7
410,257 + HMPREF1078_RS14550 0.13 +1.0
410,257 + HMPREF1078_RS14550 0.13 +1.5
410,257 + HMPREF1078_RS14550 0.13 +2.5
410,311 + HMPREF1078_RS14550 0.21 +1.7
410,312 - HMPREF1078_RS14550 0.21 +0.1
410,329 - HMPREF1078_RS14550 0.23 -0.2
410,329 - HMPREF1078_RS14550 0.23 +0.4
410,372 + HMPREF1078_RS14550 0.29 +2.2
410,398 - HMPREF1078_RS14550 0.33 +0.4
410,398 - HMPREF1078_RS14550 0.33 -0.2
410,465 + HMPREF1078_RS14550 0.42 +1.9
410,465 + HMPREF1078_RS14550 0.42 +1.1
410,466 - HMPREF1078_RS14550 0.42 -0.6
410,466 - HMPREF1078_RS14550 0.42 -0.9
410,468 + HMPREF1078_RS14550 0.42 +0.2
410,468 + HMPREF1078_RS14550 0.42 -3.0
410,468 + HMPREF1078_RS14550 0.42 +2.1
410,468 + HMPREF1078_RS14550 0.42 +1.7
410,541 + HMPREF1078_RS14550 0.52 +2.9
410,545 - HMPREF1078_RS14550 0.53 +0.4
410,611 + HMPREF1078_RS14550 0.62 +1.2
410,652 + HMPREF1078_RS14550 0.67 +1.2
410,674 + HMPREF1078_RS14550 0.70 +0.7
410,754 + HMPREF1078_RS14550 0.81 +1.3
410,755 - HMPREF1078_RS14550 0.81 -0.6
410,757 + HMPREF1078_RS14550 0.82 +1.1
410,759 + HMPREF1078_RS14550 0.82 +1.2
410,760 - HMPREF1078_RS14550 0.82 +0.4
410,825 + +0.7
410,839 + +1.7
410,840 - -0.6
410,884 - -0.4
410,887 + +0.9
410,887 + +4.0
410,887 + +2.0
410,895 - -0.2
410,918 + +1.5
410,918 + -0.9
410,918 + +2.4
410,973 - +0.1
411,001 + HMPREF1078_RS14555 0.12 +1.7
411,001 + HMPREF1078_RS14555 0.12 +0.8
411,002 - HMPREF1078_RS14555 0.12 +1.4
411,019 + HMPREF1078_RS14555 0.14 +1.6
411,022 + HMPREF1078_RS14555 0.14 +0.6
411,022 + HMPREF1078_RS14555 0.14 +0.5
411,022 + HMPREF1078_RS14555 0.14 +3.7
411,023 - HMPREF1078_RS14555 0.14 +0.4
411,023 - HMPREF1078_RS14555 0.14 +0.1
411,031 + HMPREF1078_RS14555 0.15 -0.4
411,031 + HMPREF1078_RS14555 0.15 +2.1
411,032 - HMPREF1078_RS14555 0.15 +0.8
411,032 - HMPREF1078_RS14555 0.15 -0.6
411,032 - HMPREF1078_RS14555 0.15 -0.2
411,130 - HMPREF1078_RS14555 0.26 +0.1

Or see this region's nucleotide sequence