Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS13390

Experiment: NAG 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG 10 mg/mL (C)
112,715	+		HMPREF1078_RS13375	0.85	-0.6
112,749	-		HMPREF1078_RS13375	0.88	-1.6
112,760	+		HMPREF1078_RS13375	0.88	-2.1
112,810	+				-1.0
112,884	+				-1.5
112,926	-				+1.2
112,939	+				-1.5
112,939	+				+0.1
113,115	+		HMPREF1078_RS13380	0.15	+0.6
113,116	-		HMPREF1078_RS13380	0.16	-0.8
113,116	-		HMPREF1078_RS13380	0.16	+0.4
113,119	+		HMPREF1078_RS13380	0.17	+0.2
113,188	-		HMPREF1078_RS13380	0.55	+0.3
113,212	+		HMPREF1078_RS13380	0.68	+1.4
113,234	+		HMPREF1078_RS13380	0.80	+0.9
113,234	+		HMPREF1078_RS13380	0.80	-1.7
113,235	-		HMPREF1078_RS13380	0.81	-0.3
113,235	-		HMPREF1078_RS13380	0.81	-0.9
113,235	-		HMPREF1078_RS13380	0.81	+0.1
113,235	-		HMPREF1078_RS13380	0.81	-0.4
113,269	+				-0.6
113,311	+				-0.2
113,338	-		HMPREF1078_RS13385	0.14	-0.6
113,562	-		HMPREF1078_RS13385	0.72	+0.3
113,562	-		HMPREF1078_RS13385	0.72	+1.2
113,663	+				+0.7
113,663	+				-0.7
113,664	-				-1.5
113,672	+				+0.0
113,673	-				+1.3
113,675	+				+0.2
113,675	+				+1.4
113,676	-				+0.9
113,676	-				+0.9
113,891	-		HMPREF1078_RS13390	0.14	+0.3
114,003	-		HMPREF1078_RS13390	0.22	-0.1
114,087	-		HMPREF1078_RS13390	0.28	-0.5
114,173	+		HMPREF1078_RS13390	0.34	-1.3
114,250	+		HMPREF1078_RS13390	0.40	+0.5
114,250	+		HMPREF1078_RS13390	0.40	-0.7
114,251	-		HMPREF1078_RS13390	0.40	+1.0
114,251	-		HMPREF1078_RS13390	0.40	+0.7
114,253	-		HMPREF1078_RS13390	0.40	+0.6
114,621	+		HMPREF1078_RS13390	0.67	+0.2
114,626	+		HMPREF1078_RS13390	0.67	+0.5
114,626	+		HMPREF1078_RS13390	0.67	-0.3
114,626	+		HMPREF1078_RS13390	0.67	-0.4
114,626	+		HMPREF1078_RS13390	0.67	-0.6
114,656	+		HMPREF1078_RS13390	0.69	+1.3
114,897	-		HMPREF1078_RS13390	0.87	+0.3
114,897	-		HMPREF1078_RS13390	0.87	+0.0
114,897	-		HMPREF1078_RS13390	0.87	+0.1
114,946	+				+0.7
114,947	-				+0.3
115,381	+		HMPREF1078_RS13395	0.22	-0.8
115,382	-		HMPREF1078_RS13395	0.22	-1.7
115,382	-		HMPREF1078_RS13395	0.22	-0.2
115,382	-		HMPREF1078_RS13395	0.22	+0.2
115,427	-		HMPREF1078_RS13395	0.25	+1.1
115,575	+		HMPREF1078_RS13395	0.36	-0.7