Experiment: NAG 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09335 and HMPREF1078_RS09340 are separated by 69 nucleotides HMPREF1078_RS09340 and HMPREF1078_RS09345 overlap by 4 nucleotides HMPREF1078_RS09345 and HMPREF1078_RS09350 are separated by 8 nucleotides
HMPREF1078_RS09335: HMPREF1078_RS09335 - conjugative transposon protein TraM, at 453,684 to 455,009
_RS09335
HMPREF1078_RS09340: HMPREF1078_RS09340 - conjugative transposon protein TraN, at 455,079 to 456,071
_RS09340
HMPREF1078_RS09345: HMPREF1078_RS09345 - conjugal transfer protein TraO, at 456,068 to 456,625
_RS09345
HMPREF1078_RS09350: HMPREF1078_RS09350 - DUF4116 domain-containing protein, at 456,634 to 457,527
_RS09350
Position (kb) 455
456
457 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 454.094 kb on - strand, within HMPREF1078_RS09335 at 454.152 kb on - strand, within HMPREF1078_RS09335 at 454.550 kb on - strand, within HMPREF1078_RS09335 at 454.736 kb on - strand, within HMPREF1078_RS09335 at 454.736 kb on - strand, within HMPREF1078_RS09335 at 454.736 kb on - strand, within HMPREF1078_RS09335 at 454.933 kb on - strand at 454.935 kb on - strand at 454.935 kb on - strand at 454.935 kb on - strand at 454.937 kb on - strand at 454.937 kb on - strand at 455.008 kb on - strand at 455.078 kb on + strand at 455.344 kb on - strand, within HMPREF1078_RS09340 at 455.707 kb on - strand, within HMPREF1078_RS09340 at 455.722 kb on + strand, within HMPREF1078_RS09340 at 455.723 kb on - strand, within HMPREF1078_RS09340 at 455.723 kb on - strand, within HMPREF1078_RS09340 at 455.724 kb on + strand, within HMPREF1078_RS09340 at 455.725 kb on - strand, within HMPREF1078_RS09340 at 455.725 kb on - strand, within HMPREF1078_RS09340 at 455.725 kb on - strand, within HMPREF1078_RS09340 at 455.725 kb on - strand, within HMPREF1078_RS09340 at 455.725 kb on - strand, within HMPREF1078_RS09340 at 455.725 kb on - strand, within HMPREF1078_RS09340 at 455.884 kb on - strand, within HMPREF1078_RS09340 at 456.224 kb on + strand, within HMPREF1078_RS09345 at 456.225 kb on - strand, within HMPREF1078_RS09345 at 456.225 kb on - strand, within HMPREF1078_RS09345 at 456.251 kb on + strand, within HMPREF1078_RS09345 at 456.377 kb on + strand, within HMPREF1078_RS09345 at 456.509 kb on + strand, within HMPREF1078_RS09345 at 456.509 kb on + strand, within HMPREF1078_RS09345 at 456.510 kb on - strand, within HMPREF1078_RS09345 at 456.559 kb on - strand, within HMPREF1078_RS09345 at 456.601 kb on - strand at 456.604 kb on + strand at 456.605 kb on - strand at 456.607 kb on - strand at 456.607 kb on - strand at 456.669 kb on - strand at 456.669 kb on - strand at 456.714 kb on - strand at 457.033 kb on + strand, within HMPREF1078_RS09350 at 457.033 kb on + strand, within HMPREF1078_RS09350 at 457.034 kb on - strand, within HMPREF1078_RS09350
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 10 mg/mL (C) remove 454,094 - HMPREF1078_RS09335 0.31 +0.4 454,152 - HMPREF1078_RS09335 0.35 +0.9 454,550 - HMPREF1078_RS09335 0.65 -2.0 454,736 - HMPREF1078_RS09335 0.79 +0.6 454,736 - HMPREF1078_RS09335 0.79 -0.5 454,736 - HMPREF1078_RS09335 0.79 -0.5 454,933 - -1.3 454,935 - +1.5 454,935 - +0.3 454,935 - -1.1 454,937 - -1.0 454,937 - -1.5 455,008 - -1.8 455,078 + -0.6 455,344 - HMPREF1078_RS09340 0.27 -0.3 455,707 - HMPREF1078_RS09340 0.63 +1.3 455,722 + HMPREF1078_RS09340 0.65 -1.6 455,723 - HMPREF1078_RS09340 0.65 +1.2 455,723 - HMPREF1078_RS09340 0.65 +0.1 455,724 + HMPREF1078_RS09340 0.65 -0.9 455,725 - HMPREF1078_RS09340 0.65 +1.0 455,725 - HMPREF1078_RS09340 0.65 +0.4 455,725 - HMPREF1078_RS09340 0.65 +0.7 455,725 - HMPREF1078_RS09340 0.65 +0.2 455,725 - HMPREF1078_RS09340 0.65 +1.7 455,725 - HMPREF1078_RS09340 0.65 +0.4 455,884 - HMPREF1078_RS09340 0.81 +0.2 456,224 + HMPREF1078_RS09345 0.28 -2.0 456,225 - HMPREF1078_RS09345 0.28 +0.9 456,225 - HMPREF1078_RS09345 0.28 +1.4 456,251 + HMPREF1078_RS09345 0.33 -1.0 456,377 + HMPREF1078_RS09345 0.55 -0.2 456,509 + HMPREF1078_RS09345 0.79 +2.4 456,509 + HMPREF1078_RS09345 0.79 +0.9 456,510 - HMPREF1078_RS09345 0.79 +0.1 456,559 - HMPREF1078_RS09345 0.88 -0.3 456,601 - -1.0 456,604 + -1.7 456,605 - -0.4 456,607 - +0.3 456,607 - -2.5 456,669 - -0.1 456,669 - +1.1 456,714 - +0.5 457,033 + HMPREF1078_RS09350 0.45 -0.4 457,033 + HMPREF1078_RS09350 0.45 -3.5 457,034 - HMPREF1078_RS09350 0.45 +0.3
Or see this region's nucleotide sequence