Experiment: NAG 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05970 and HMPREF1078_RS05975 overlap by 1 nucleotides HMPREF1078_RS05975 and HMPREF1078_RS05980 are separated by 26 nucleotides
HMPREF1078_RS05970: HMPREF1078_RS05970 - ABC transporter permease, at 530,953 to 533,358
_RS05970
HMPREF1078_RS05975: HMPREF1078_RS05975 - HlyD family efflux transporter periplasmic adaptor subunit, at 533,358 to 534,605
_RS05975
HMPREF1078_RS05980: HMPREF1078_RS05980 - TolC family protein, at 534,632 to 535,993
_RS05980
Position (kb) 533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 532.492 kb on + strand, within HMPREF1078_RS05970 at 532.513 kb on + strand, within HMPREF1078_RS05970 at 532.514 kb on - strand, within HMPREF1078_RS05970 at 532.522 kb on - strand, within HMPREF1078_RS05970 at 532.522 kb on - strand, within HMPREF1078_RS05970 at 532.522 kb on - strand, within HMPREF1078_RS05970 at 532.554 kb on + strand, within HMPREF1078_RS05970 at 532.700 kb on + strand, within HMPREF1078_RS05970 at 532.701 kb on - strand, within HMPREF1078_RS05970 at 532.701 kb on - strand, within HMPREF1078_RS05970 at 532.705 kb on - strand, within HMPREF1078_RS05970 at 532.705 kb on - strand, within HMPREF1078_RS05970 at 532.705 kb on - strand, within HMPREF1078_RS05970 at 532.775 kb on + strand, within HMPREF1078_RS05970 at 532.776 kb on - strand, within HMPREF1078_RS05970 at 532.909 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.080 kb on + strand, within HMPREF1078_RS05970 at 533.081 kb on - strand, within HMPREF1078_RS05970 at 533.084 kb on + strand, within HMPREF1078_RS05970 at 533.084 kb on + strand, within HMPREF1078_RS05970 at 533.085 kb on - strand, within HMPREF1078_RS05970 at 533.085 kb on - strand, within HMPREF1078_RS05970 at 533.085 kb on - strand, within HMPREF1078_RS05970 at 533.085 kb on - strand, within HMPREF1078_RS05970 at 533.086 kb on - strand, within HMPREF1078_RS05970 at 533.152 kb on - strand at 533.242 kb on + strand at 533.242 kb on + strand at 533.243 kb on - strand at 533.254 kb on - strand at 533.522 kb on - strand, within HMPREF1078_RS05975 at 533.522 kb on - strand, within HMPREF1078_RS05975 at 533.522 kb on - strand, within HMPREF1078_RS05975 at 533.556 kb on - strand, within HMPREF1078_RS05975 at 533.612 kb on - strand, within HMPREF1078_RS05975 at 533.720 kb on - strand, within HMPREF1078_RS05975 at 533.720 kb on - strand, within HMPREF1078_RS05975 at 533.776 kb on + strand, within HMPREF1078_RS05975 at 534.107 kb on + strand, within HMPREF1078_RS05975 at 534.110 kb on - strand, within HMPREF1078_RS05975 at 534.110 kb on - strand, within HMPREF1078_RS05975 at 534.382 kb on + strand, within HMPREF1078_RS05975 at 534.382 kb on + strand, within HMPREF1078_RS05975 at 534.389 kb on + strand, within HMPREF1078_RS05975 at 534.389 kb on + strand, within HMPREF1078_RS05975 at 534.452 kb on + strand, within HMPREF1078_RS05975 at 534.497 kb on + strand at 534.498 kb on - strand at 534.547 kb on - strand at 534.609 kb on - strand at 534.630 kb on - strand at 534.663 kb on + strand at 534.693 kb on + strand at 534.694 kb on - strand at 534.734 kb on - strand at 534.735 kb on + strand at 534.735 kb on + strand at 535.023 kb on + strand, within HMPREF1078_RS05980 at 535.037 kb on - strand, within HMPREF1078_RS05980 at 535.095 kb on + strand, within HMPREF1078_RS05980 at 535.244 kb on - strand, within HMPREF1078_RS05980 at 535.304 kb on - strand, within HMPREF1078_RS05980 at 535.319 kb on - strand, within HMPREF1078_RS05980 at 535.453 kb on - strand, within HMPREF1078_RS05980 at 535.526 kb on + strand, within HMPREF1078_RS05980
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 10 mg/mL (C) remove 532,492 + HMPREF1078_RS05970 0.64 -2.5 532,513 + HMPREF1078_RS05970 0.65 +0.7 532,514 - HMPREF1078_RS05970 0.65 -1.1 532,522 - HMPREF1078_RS05970 0.65 -0.9 532,522 - HMPREF1078_RS05970 0.65 -0.1 532,522 - HMPREF1078_RS05970 0.65 -1.0 532,554 + HMPREF1078_RS05970 0.67 -0.7 532,700 + HMPREF1078_RS05970 0.73 +0.4 532,701 - HMPREF1078_RS05970 0.73 +0.0 532,701 - HMPREF1078_RS05970 0.73 -3.3 532,705 - HMPREF1078_RS05970 0.73 -0.1 532,705 - HMPREF1078_RS05970 0.73 -0.0 532,705 - HMPREF1078_RS05970 0.73 +0.5 532,775 + HMPREF1078_RS05970 0.76 -0.5 532,776 - HMPREF1078_RS05970 0.76 -0.2 532,909 + HMPREF1078_RS05970 0.81 -1.4 533,080 + HMPREF1078_RS05970 0.88 -0.2 533,080 + HMPREF1078_RS05970 0.88 +0.1 533,080 + HMPREF1078_RS05970 0.88 -2.6 533,080 + HMPREF1078_RS05970 0.88 -2.5 533,080 + HMPREF1078_RS05970 0.88 -1.1 533,080 + HMPREF1078_RS05970 0.88 -1.3 533,081 - HMPREF1078_RS05970 0.88 -1.7 533,084 + HMPREF1078_RS05970 0.89 -1.5 533,084 + HMPREF1078_RS05970 0.89 +0.0 533,085 - HMPREF1078_RS05970 0.89 -1.5 533,085 - HMPREF1078_RS05970 0.89 +1.0 533,085 - HMPREF1078_RS05970 0.89 -0.1 533,085 - HMPREF1078_RS05970 0.89 -0.3 533,086 - HMPREF1078_RS05970 0.89 -1.2 533,152 - +1.2 533,242 + -1.9 533,242 + +0.3 533,243 - -0.4 533,254 - +0.5 533,522 - HMPREF1078_RS05975 0.13 -1.0 533,522 - HMPREF1078_RS05975 0.13 -0.1 533,522 - HMPREF1078_RS05975 0.13 +0.7 533,556 - HMPREF1078_RS05975 0.16 +2.1 533,612 - HMPREF1078_RS05975 0.20 +0.4 533,720 - HMPREF1078_RS05975 0.29 -2.3 533,720 - HMPREF1078_RS05975 0.29 -0.4 533,776 + HMPREF1078_RS05975 0.33 -0.9 534,107 + HMPREF1078_RS05975 0.60 -1.9 534,110 - HMPREF1078_RS05975 0.60 +0.6 534,110 - HMPREF1078_RS05975 0.60 -0.8 534,382 + HMPREF1078_RS05975 0.82 -1.5 534,382 + HMPREF1078_RS05975 0.82 +0.1 534,389 + HMPREF1078_RS05975 0.83 +1.4 534,389 + HMPREF1078_RS05975 0.83 +0.3 534,452 + HMPREF1078_RS05975 0.88 -0.9 534,497 + +0.3 534,498 - +0.5 534,547 - -0.3 534,609 - -0.7 534,630 - +0.3 534,663 + -1.7 534,693 + -0.5 534,694 - +0.3 534,734 - -0.5 534,735 + -0.5 534,735 + -0.2 535,023 + HMPREF1078_RS05980 0.29 -0.1 535,037 - HMPREF1078_RS05980 0.30 +0.3 535,095 + HMPREF1078_RS05980 0.34 -0.5 535,244 - HMPREF1078_RS05980 0.45 -0.9 535,304 - HMPREF1078_RS05980 0.49 -2.4 535,319 - HMPREF1078_RS05980 0.50 +1.8 535,453 - HMPREF1078_RS05980 0.60 -1.2 535,526 + HMPREF1078_RS05980 0.66 -0.5
Or see this region's nucleotide sequence