Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04440

Experiment: NAG 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG 10 mg/mL (C)
118,891	-				-2.6
118,935	-		HMPREF1078_RS04435	0.12	-1.9
119,059	-		HMPREF1078_RS04435	0.26	-0.7
119,059	-		HMPREF1078_RS04435	0.26	-2.0
119,108	-		HMPREF1078_RS04435	0.32	-2.2
119,166	-		HMPREF1078_RS04435	0.39	-1.4
119,228	-		HMPREF1078_RS04435	0.45	-1.7
119,323	-		HMPREF1078_RS04435	0.56	-1.1
119,323	-		HMPREF1078_RS04435	0.56	-3.1
119,469	-		HMPREF1078_RS04435	0.73	-1.0
119,469	-		HMPREF1078_RS04435	0.73	-1.3
119,469	-		HMPREF1078_RS04435	0.73	-1.1
119,469	-		HMPREF1078_RS04435	0.73	-2.8
119,469	-		HMPREF1078_RS04435	0.73	-2.8
119,475	-		HMPREF1078_RS04435	0.73	-0.0
119,475	-		HMPREF1078_RS04435	0.73	-0.5
119,475	-		HMPREF1078_RS04435	0.73	-1.5
119,477	-		HMPREF1078_RS04435	0.74	+0.3
119,477	-		HMPREF1078_RS04435	0.74	-2.8
119,477	-		HMPREF1078_RS04435	0.74	-3.3
119,477	-		HMPREF1078_RS04435	0.74	-0.7
119,607	-		HMPREF1078_RS04435	0.88	-1.9
119,617	-		HMPREF1078_RS04435	0.89	-0.7
119,628	-				-1.1
119,628	-				-1.8
119,712	-				-1.9
119,747	-				+0.1
119,773	-				-0.9
119,773	-				-0.3
119,780	-				-2.8
119,780	-				-0.0
119,780	-				-1.4
119,780	-				-1.9
119,807	-				+0.0
119,862	-				-1.3
119,911	-		HMPREF1078_RS04440	0.16	-1.8
119,967	-		HMPREF1078_RS04440	0.23	-2.1
119,967	-		HMPREF1078_RS04440	0.23	-3.7
119,967	-		HMPREF1078_RS04440	0.23	-1.5
119,967	-		HMPREF1078_RS04440	0.23	-1.8
120,000	-		HMPREF1078_RS04440	0.27	-0.8
120,000	-		HMPREF1078_RS04440	0.27	-1.9
120,193	-		HMPREF1078_RS04440	0.53	-1.3
120,193	-		HMPREF1078_RS04440	0.53	-2.1
120,236	-		HMPREF1078_RS04440	0.58	-2.4
120,375	-		HMPREF1078_RS04440	0.76	-2.0
120,493	-				-2.3
120,511	-				+0.2
120,515	-				-1.9
120,544	-				-0.7
120,565	-				-0.5
120,651	+				-0.3
120,652	-				-0.3
120,673	-				-0.4
120,675	-				-1.0
120,684	-				-0.6
120,684	-				+0.7
120,768	+				+0.6
120,768	+				+1.1
120,769	-				+0.6
120,770	+				-0.5
120,780	+		HMPREF1078_RS04445	0.11	-0.4
120,834	+		HMPREF1078_RS04445	0.29	-0.8
120,834	+		HMPREF1078_RS04445	0.29	-1.3
120,835	-		HMPREF1078_RS04445	0.29	+1.0
120,835	-		HMPREF1078_RS04445	0.29	+0.7
120,835	-		HMPREF1078_RS04445	0.29	+1.3
120,835	-		HMPREF1078_RS04445	0.29	-0.6
120,835	-		HMPREF1078_RS04445	0.29	-2.8
120,835	-		HMPREF1078_RS04445	0.29	-1.0
120,836	+		HMPREF1078_RS04445	0.29	-0.3
120,872	+		HMPREF1078_RS04445	0.41	-2.5
120,883	+		HMPREF1078_RS04445	0.45	+0.2
120,883	+		HMPREF1078_RS04445	0.45	+1.5
120,894	+		HMPREF1078_RS04445	0.48	-1.5
120,895	-		HMPREF1078_RS04445	0.49	+0.2
120,953	-		HMPREF1078_RS04445	0.67	-0.4
120,957	+		HMPREF1078_RS04445	0.69	+1.4
120,958	-		HMPREF1078_RS04445	0.69	+0.1
120,983	+		HMPREF1078_RS04445	0.77	-1.2
121,017	+		HMPREF1078_RS04445	0.88	+0.5
121,073	+				-0.1
121,073	+				-0.7
121,073	+				-0.7
121,073	+				+0.6
121,074	-				-0.6
121,074	-				-1.4
121,087	+				-0.3
121,099	-				+0.4
121,108	-				-1.5
121,144	+				+1.1
121,144	+				-0.7
121,144	+				+1.2
121,151	-				+0.3
121,163	+				-0.2
121,163	+				+0.2
121,163	+				+0.0
121,164	-				-1.0
121,165	+				-1.9
121,165	+				-0.8
121,212	+				+0.5
121,251	-				-1.1
121,253	+				+2.0
121,253	+				+0.9
121,255	+				+1.3
121,255	+				-1.3
121,256	-				-0.9
121,256	-				+0.3
121,256	-				+0.7
121,256	-				-1.1
121,256	-				+0.3
121,261	+				+0.4
121,283	-				+0.0
121,289	+				-0.6
121,289	+				+0.2
121,290	-				+1.4
121,291	+				+0.3
121,291	+				-1.9
121,301	-				+0.1
121,322	+				-0.8
121,322	+				-0.7
121,326	+				-1.2
121,334	+				-1.0
121,334	+				-1.5
121,334	+				-1.5
121,334	+				-0.0
121,334	+				-1.3
121,334	+				+0.5
121,334	+				-0.4
121,334	+				+0.1
121,334	+				-0.4
121,334	+				-0.5
121,334	+				+0.7
121,334	+				-0.5
121,335	-				+0.1
121,335	-				-0.3
121,335	-				+0.3
121,335	-				+1.3
121,335	-				-1.0
121,335	-				-0.0
121,335	-				-1.3
121,335	-				+1.0
121,335	-				+0.5
121,335	-				-1.2
121,338	+				+0.5
121,339	-				-1.1
121,339	-				-1.1
121,343	+				+1.2
121,343	+				-1.5
121,344	-				-0.9
121,344	-				+0.3
121,344	-				-0.8
121,344	-				-2.2
121,344	-				+0.6
121,345	+				+0.7
121,346	-				-0.3
121,390	-				-0.2
121,391	+				-1.1
121,414	+				+0.7
121,436	+				+0.1
121,487	+				+0.5
121,553	-				-0.5