Experiment: NAG 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03590 and HMPREF1078_RS03595 overlap by 8 nucleotides HMPREF1078_RS03595 and HMPREF1078_RS03600 overlap by 29 nucleotides
HMPREF1078_RS03590: HMPREF1078_RS03590 - MBOAT family protein, at 846,879 to 848,438
_RS03590
HMPREF1078_RS03595: HMPREF1078_RS03595 - GDSL-type esterase/lipase family protein, at 848,431 to 849,777
_RS03595
HMPREF1078_RS03600: HMPREF1078_RS03600 - hypothetical protein, at 849,749 to 851,197
_RS03600
Position (kb) 848
849
850 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 847.436 kb on - strand, within HMPREF1078_RS03590 at 847.606 kb on + strand, within HMPREF1078_RS03590 at 847.613 kb on - strand, within HMPREF1078_RS03590 at 847.613 kb on - strand, within HMPREF1078_RS03590 at 847.688 kb on + strand, within HMPREF1078_RS03590 at 847.690 kb on - strand, within HMPREF1078_RS03590 at 847.698 kb on + strand, within HMPREF1078_RS03590 at 847.726 kb on - strand, within HMPREF1078_RS03590 at 847.764 kb on - strand, within HMPREF1078_RS03590 at 847.849 kb on + strand, within HMPREF1078_RS03590 at 847.931 kb on + strand, within HMPREF1078_RS03590 at 847.961 kb on + strand, within HMPREF1078_RS03590 at 847.962 kb on - strand, within HMPREF1078_RS03590 at 847.976 kb on - strand, within HMPREF1078_RS03590 at 847.980 kb on - strand, within HMPREF1078_RS03590 at 847.980 kb on - strand, within HMPREF1078_RS03590 at 847.980 kb on - strand, within HMPREF1078_RS03590 at 847.980 kb on - strand, within HMPREF1078_RS03590 at 847.980 kb on - strand, within HMPREF1078_RS03590 at 847.998 kb on - strand, within HMPREF1078_RS03590 at 848.011 kb on + strand, within HMPREF1078_RS03590 at 848.086 kb on - strand, within HMPREF1078_RS03590 at 848.086 kb on - strand, within HMPREF1078_RS03590 at 848.219 kb on + strand, within HMPREF1078_RS03590 at 848.220 kb on - strand, within HMPREF1078_RS03590 at 848.247 kb on - strand, within HMPREF1078_RS03590 at 848.252 kb on - strand, within HMPREF1078_RS03590 at 848.259 kb on - strand, within HMPREF1078_RS03590 at 848.289 kb on - strand at 848.290 kb on + strand at 848.295 kb on - strand at 848.363 kb on - strand at 848.370 kb on + strand at 848.370 kb on + strand at 848.371 kb on - strand at 848.466 kb on + strand at 848.489 kb on + strand at 848.536 kb on - strand at 848.620 kb on + strand, within HMPREF1078_RS03595 at 848.621 kb on - strand, within HMPREF1078_RS03595 at 848.621 kb on - strand, within HMPREF1078_RS03595 at 848.621 kb on - strand, within HMPREF1078_RS03595 at 848.687 kb on + strand, within HMPREF1078_RS03595 at 848.687 kb on + strand, within HMPREF1078_RS03595 at 848.687 kb on + strand, within HMPREF1078_RS03595 at 848.687 kb on + strand, within HMPREF1078_RS03595 at 848.687 kb on + strand, within HMPREF1078_RS03595 at 848.687 kb on + strand, within HMPREF1078_RS03595 at 848.688 kb on - strand, within HMPREF1078_RS03595 at 848.688 kb on - strand, within HMPREF1078_RS03595 at 848.688 kb on - strand, within HMPREF1078_RS03595 at 848.708 kb on + strand, within HMPREF1078_RS03595 at 848.709 kb on - strand, within HMPREF1078_RS03595 at 848.709 kb on - strand, within HMPREF1078_RS03595 at 848.709 kb on - strand, within HMPREF1078_RS03595 at 848.709 kb on - strand, within HMPREF1078_RS03595 at 848.721 kb on - strand, within HMPREF1078_RS03595 at 848.721 kb on - strand, within HMPREF1078_RS03595 at 848.794 kb on + strand, within HMPREF1078_RS03595 at 848.794 kb on + strand, within HMPREF1078_RS03595 at 848.848 kb on - strand, within HMPREF1078_RS03595 at 848.900 kb on + strand, within HMPREF1078_RS03595 at 848.901 kb on - strand, within HMPREF1078_RS03595 at 848.901 kb on - strand, within HMPREF1078_RS03595 at 848.924 kb on + strand, within HMPREF1078_RS03595 at 848.925 kb on - strand, within HMPREF1078_RS03595 at 849.030 kb on + strand, within HMPREF1078_RS03595 at 849.073 kb on - strand, within HMPREF1078_RS03595 at 849.073 kb on - strand, within HMPREF1078_RS03595 at 849.090 kb on + strand, within HMPREF1078_RS03595 at 849.091 kb on - strand, within HMPREF1078_RS03595 at 849.148 kb on + strand, within HMPREF1078_RS03595 at 849.148 kb on + strand, within HMPREF1078_RS03595 at 849.180 kb on + strand, within HMPREF1078_RS03595 at 849.181 kb on - strand, within HMPREF1078_RS03595 at 849.337 kb on - strand, within HMPREF1078_RS03595 at 849.496 kb on + strand, within HMPREF1078_RS03595 at 849.496 kb on + strand, within HMPREF1078_RS03595 at 849.497 kb on - strand, within HMPREF1078_RS03595 at 849.497 kb on - strand, within HMPREF1078_RS03595 at 849.651 kb on + strand at 849.657 kb on + strand at 849.750 kb on + strand at 849.750 kb on + strand at 849.750 kb on + strand at 849.751 kb on - strand at 849.795 kb on - strand at 849.822 kb on - strand at 849.975 kb on - strand, within HMPREF1078_RS03600 at 850.079 kb on + strand, within HMPREF1078_RS03600 at 850.080 kb on - strand, within HMPREF1078_RS03600 at 850.122 kb on + strand, within HMPREF1078_RS03600 at 850.187 kb on + strand, within HMPREF1078_RS03600 at 850.188 kb on - strand, within HMPREF1078_RS03600 at 850.260 kb on + strand, within HMPREF1078_RS03600 at 850.260 kb on + strand, within HMPREF1078_RS03600 at 850.371 kb on + strand, within HMPREF1078_RS03600 at 850.467 kb on + strand, within HMPREF1078_RS03600 at 850.576 kb on + strand, within HMPREF1078_RS03600 at 850.576 kb on + strand, within HMPREF1078_RS03600 at 850.577 kb on - strand, within HMPREF1078_RS03600 at 850.578 kb on + strand, within HMPREF1078_RS03600 at 850.750 kb on - strand, within HMPREF1078_RS03600
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 10 mg/mL (C) remove 847,436 - HMPREF1078_RS03590 0.36 +0.5 847,606 + HMPREF1078_RS03590 0.47 +0.3 847,613 - HMPREF1078_RS03590 0.47 -0.4 847,613 - HMPREF1078_RS03590 0.47 +1.3 847,688 + HMPREF1078_RS03590 0.52 -1.8 847,690 - HMPREF1078_RS03590 0.52 +0.8 847,698 + HMPREF1078_RS03590 0.53 +0.4 847,726 - HMPREF1078_RS03590 0.54 +0.2 847,764 - HMPREF1078_RS03590 0.57 +1.5 847,849 + HMPREF1078_RS03590 0.62 -0.2 847,931 + HMPREF1078_RS03590 0.67 -0.0 847,961 + HMPREF1078_RS03590 0.69 +0.2 847,962 - HMPREF1078_RS03590 0.69 +0.4 847,976 - HMPREF1078_RS03590 0.70 +0.5 847,980 - HMPREF1078_RS03590 0.71 +0.5 847,980 - HMPREF1078_RS03590 0.71 +0.1 847,980 - HMPREF1078_RS03590 0.71 +0.1 847,980 - HMPREF1078_RS03590 0.71 +1.2 847,980 - HMPREF1078_RS03590 0.71 +1.0 847,998 - HMPREF1078_RS03590 0.72 -1.1 848,011 + HMPREF1078_RS03590 0.73 +0.3 848,086 - HMPREF1078_RS03590 0.77 -1.7 848,086 - HMPREF1078_RS03590 0.77 -0.8 848,219 + HMPREF1078_RS03590 0.86 -0.2 848,220 - HMPREF1078_RS03590 0.86 -0.1 848,247 - HMPREF1078_RS03590 0.88 -1.0 848,252 - HMPREF1078_RS03590 0.88 +0.2 848,259 - HMPREF1078_RS03590 0.88 +1.1 848,289 - +0.4 848,290 + -0.4 848,295 - -0.7 848,363 - +0.7 848,370 + -0.1 848,370 + -0.0 848,371 - +0.2 848,466 + -1.0 848,489 + -1.8 848,536 - +1.8 848,620 + HMPREF1078_RS03595 0.14 -1.2 848,621 - HMPREF1078_RS03595 0.14 +0.9 848,621 - HMPREF1078_RS03595 0.14 -3.0 848,621 - HMPREF1078_RS03595 0.14 +0.3 848,687 + HMPREF1078_RS03595 0.19 +0.3 848,687 + HMPREF1078_RS03595 0.19 +0.6 848,687 + HMPREF1078_RS03595 0.19 -0.6 848,687 + HMPREF1078_RS03595 0.19 +0.0 848,687 + HMPREF1078_RS03595 0.19 +0.3 848,687 + HMPREF1078_RS03595 0.19 +1.1 848,688 - HMPREF1078_RS03595 0.19 -0.2 848,688 - HMPREF1078_RS03595 0.19 +1.3 848,688 - HMPREF1078_RS03595 0.19 -2.0 848,708 + HMPREF1078_RS03595 0.21 +1.2 848,709 - HMPREF1078_RS03595 0.21 -0.7 848,709 - HMPREF1078_RS03595 0.21 +0.5 848,709 - HMPREF1078_RS03595 0.21 -0.5 848,709 - HMPREF1078_RS03595 0.21 -0.2 848,721 - HMPREF1078_RS03595 0.22 +0.1 848,721 - HMPREF1078_RS03595 0.22 -1.7 848,794 + HMPREF1078_RS03595 0.27 +1.7 848,794 + HMPREF1078_RS03595 0.27 -0.7 848,848 - HMPREF1078_RS03595 0.31 +3.2 848,900 + HMPREF1078_RS03595 0.35 +0.7 848,901 - HMPREF1078_RS03595 0.35 +2.8 848,901 - HMPREF1078_RS03595 0.35 +0.7 848,924 + HMPREF1078_RS03595 0.37 +0.2 848,925 - HMPREF1078_RS03595 0.37 +1.0 849,030 + HMPREF1078_RS03595 0.44 +1.7 849,073 - HMPREF1078_RS03595 0.48 -0.2 849,073 - HMPREF1078_RS03595 0.48 -1.5 849,090 + HMPREF1078_RS03595 0.49 +1.0 849,091 - HMPREF1078_RS03595 0.49 -1.0 849,148 + HMPREF1078_RS03595 0.53 +0.7 849,148 + HMPREF1078_RS03595 0.53 +1.3 849,180 + HMPREF1078_RS03595 0.56 -0.2 849,181 - HMPREF1078_RS03595 0.56 +0.3 849,337 - HMPREF1078_RS03595 0.67 -0.3 849,496 + HMPREF1078_RS03595 0.79 +1.3 849,496 + HMPREF1078_RS03595 0.79 +1.0 849,497 - HMPREF1078_RS03595 0.79 -0.8 849,497 - HMPREF1078_RS03595 0.79 +0.5 849,651 + +1.4 849,657 + +0.6 849,750 + -0.9 849,750 + -0.5 849,750 + +1.2 849,751 - +0.5 849,795 - -0.0 849,822 - -2.5 849,975 - HMPREF1078_RS03600 0.16 -2.5 850,079 + HMPREF1078_RS03600 0.23 +0.7 850,080 - HMPREF1078_RS03600 0.23 -2.0 850,122 + HMPREF1078_RS03600 0.26 +0.3 850,187 + HMPREF1078_RS03600 0.30 +0.2 850,188 - HMPREF1078_RS03600 0.30 -0.4 850,260 + HMPREF1078_RS03600 0.35 +0.7 850,260 + HMPREF1078_RS03600 0.35 +0.7 850,371 + HMPREF1078_RS03600 0.43 -0.8 850,467 + HMPREF1078_RS03600 0.50 -0.3 850,576 + HMPREF1078_RS03600 0.57 +0.8 850,576 + HMPREF1078_RS03600 0.57 -0.6 850,577 - HMPREF1078_RS03600 0.57 +0.9 850,578 + HMPREF1078_RS03600 0.57 -1.1 850,750 - HMPREF1078_RS03600 0.69 -1.4
Or see this region's nucleotide sequence