Experiment: NAG 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS03305 and HMPREF1078_RS03310 overlap by 4 nucleotides HMPREF1078_RS03310 and HMPREF1078_RS03315 are separated by 12 nucleotides HMPREF1078_RS03315 and HMPREF1078_RS03320 are separated by 19 nucleotides
HMPREF1078_RS03305: HMPREF1078_RS03305 - conjugative transposon protein TraM, at 782,216 to 783,427
_RS03305
HMPREF1078_RS03310: HMPREF1078_RS03310 - hypothetical protein, at 783,424 to 783,912
_RS03310
HMPREF1078_RS03315: HMPREF1078_RS03315 - conjugative transposon protein TraK, at 783,925 to 784,521
_RS03315
HMPREF1078_RS03320: HMPREF1078_RS03320 - membrane protein, at 784,541 to 785,668
_RS03320
Position (kb) 783
784 Strain fitness (log2 ratio) -2
-1
0
1
2 at 782.463 kb on + strand, within HMPREF1078_RS03305 at 782.464 kb on - strand, within HMPREF1078_RS03305 at 782.464 kb on - strand, within HMPREF1078_RS03305 at 782.581 kb on + strand, within HMPREF1078_RS03305 at 782.587 kb on - strand, within HMPREF1078_RS03305 at 782.592 kb on + strand, within HMPREF1078_RS03305 at 782.592 kb on + strand, within HMPREF1078_RS03305 at 782.592 kb on + strand, within HMPREF1078_RS03305 at 782.593 kb on - strand, within HMPREF1078_RS03305 at 782.593 kb on - strand, within HMPREF1078_RS03305 at 782.596 kb on + strand, within HMPREF1078_RS03305 at 782.597 kb on - strand, within HMPREF1078_RS03305 at 782.700 kb on - strand, within HMPREF1078_RS03305 at 782.913 kb on + strand, within HMPREF1078_RS03305 at 782.914 kb on - strand, within HMPREF1078_RS03305 at 783.025 kb on - strand, within HMPREF1078_RS03305 at 783.025 kb on - strand, within HMPREF1078_RS03305 at 783.025 kb on - strand, within HMPREF1078_RS03305 at 783.025 kb on - strand, within HMPREF1078_RS03305 at 783.035 kb on - strand, within HMPREF1078_RS03305 at 783.238 kb on - strand, within HMPREF1078_RS03305 at 783.352 kb on - strand at 783.394 kb on + strand at 783.394 kb on + strand at 783.396 kb on + strand at 783.396 kb on + strand at 783.396 kb on + strand at 783.397 kb on - strand at 783.397 kb on - strand at 783.421 kb on + strand at 783.432 kb on + strand at 783.433 kb on - strand at 783.554 kb on - strand, within HMPREF1078_RS03310 at 783.618 kb on + strand, within HMPREF1078_RS03310 at 783.709 kb on - strand, within HMPREF1078_RS03310 at 783.712 kb on + strand, within HMPREF1078_RS03310 at 783.713 kb on - strand, within HMPREF1078_RS03310 at 783.713 kb on - strand, within HMPREF1078_RS03310 at 783.713 kb on - strand, within HMPREF1078_RS03310 at 783.912 kb on + strand at 783.916 kb on - strand at 783.922 kb on - strand at 783.922 kb on - strand at 783.929 kb on + strand at 784.222 kb on - strand, within HMPREF1078_RS03315 at 784.222 kb on - strand, within HMPREF1078_RS03315 at 784.222 kb on - strand, within HMPREF1078_RS03315 at 784.223 kb on + strand, within HMPREF1078_RS03315 at 784.223 kb on + strand, within HMPREF1078_RS03315 at 784.224 kb on - strand, within HMPREF1078_RS03315 at 784.251 kb on + strand, within HMPREF1078_RS03315 at 784.252 kb on - strand, within HMPREF1078_RS03315 at 784.300 kb on + strand, within HMPREF1078_RS03315 at 784.301 kb on - strand, within HMPREF1078_RS03315 at 784.301 kb on - strand, within HMPREF1078_RS03315 at 784.378 kb on + strand, within HMPREF1078_RS03315 at 784.383 kb on - strand, within HMPREF1078_RS03315 at 784.471 kb on + strand at 784.471 kb on + strand at 784.515 kb on + strand at 784.515 kb on + strand at 784.521 kb on + strand at 784.522 kb on - strand at 784.522 kb on - strand at 784.551 kb on - strand at 784.610 kb on - strand at 784.673 kb on + strand, within HMPREF1078_RS03320 at 784.673 kb on + strand, within HMPREF1078_RS03320 at 784.674 kb on - strand, within HMPREF1078_RS03320 at 784.719 kb on - strand, within HMPREF1078_RS03320 at 784.719 kb on - strand, within HMPREF1078_RS03320 at 784.719 kb on - strand, within HMPREF1078_RS03320 at 784.725 kb on + strand, within HMPREF1078_RS03320 at 784.725 kb on + strand, within HMPREF1078_RS03320 at 784.725 kb on + strand, within HMPREF1078_RS03320 at 784.726 kb on - strand, within HMPREF1078_RS03320 at 784.742 kb on - strand, within HMPREF1078_RS03320 at 784.753 kb on - strand, within HMPREF1078_RS03320 at 784.753 kb on - strand, within HMPREF1078_RS03320 at 784.757 kb on - strand, within HMPREF1078_RS03320 at 784.836 kb on + strand, within HMPREF1078_RS03320 at 784.863 kb on + strand, within HMPREF1078_RS03320 at 784.882 kb on + strand, within HMPREF1078_RS03320 at 784.883 kb on - strand, within HMPREF1078_RS03320 at 784.884 kb on + strand, within HMPREF1078_RS03320 at 784.884 kb on + strand, within HMPREF1078_RS03320 at 784.885 kb on - strand, within HMPREF1078_RS03320 at 784.885 kb on - strand, within HMPREF1078_RS03320 at 784.887 kb on + strand, within HMPREF1078_RS03320 at 784.887 kb on + strand, within HMPREF1078_RS03320 at 784.897 kb on + strand, within HMPREF1078_RS03320 at 784.897 kb on + strand, within HMPREF1078_RS03320 at 784.897 kb on + strand, within HMPREF1078_RS03320 at 784.898 kb on - strand, within HMPREF1078_RS03320 at 784.899 kb on + strand, within HMPREF1078_RS03320 at 784.899 kb on + strand, within HMPREF1078_RS03320 at 784.899 kb on + strand, within HMPREF1078_RS03320 at 784.899 kb on + strand, within HMPREF1078_RS03320 at 784.899 kb on + strand, within HMPREF1078_RS03320
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 10 mg/mL (C) remove 782,463 + HMPREF1078_RS03305 0.20 -1.7 782,464 - HMPREF1078_RS03305 0.20 -0.8 782,464 - HMPREF1078_RS03305 0.20 +0.1 782,581 + HMPREF1078_RS03305 0.30 -1.3 782,587 - HMPREF1078_RS03305 0.31 -2.7 782,592 + HMPREF1078_RS03305 0.31 +1.6 782,592 + HMPREF1078_RS03305 0.31 -0.3 782,592 + HMPREF1078_RS03305 0.31 -0.1 782,593 - HMPREF1078_RS03305 0.31 -0.5 782,593 - HMPREF1078_RS03305 0.31 -0.4 782,596 + HMPREF1078_RS03305 0.31 -0.1 782,597 - HMPREF1078_RS03305 0.31 +0.3 782,700 - HMPREF1078_RS03305 0.40 -0.7 782,913 + HMPREF1078_RS03305 0.58 -0.2 782,914 - HMPREF1078_RS03305 0.58 +0.0 783,025 - HMPREF1078_RS03305 0.67 +0.5 783,025 - HMPREF1078_RS03305 0.67 +0.4 783,025 - HMPREF1078_RS03305 0.67 -0.4 783,025 - HMPREF1078_RS03305 0.67 -1.8 783,035 - HMPREF1078_RS03305 0.68 +2.2 783,238 - HMPREF1078_RS03305 0.84 -1.0 783,352 - -2.4 783,394 + -0.4 783,394 + -1.2 783,396 + -0.1 783,396 + +0.7 783,396 + -0.5 783,397 - -1.1 783,397 - -0.2 783,421 + +0.5 783,432 + +0.7 783,433 - +1.7 783,554 - HMPREF1078_RS03310 0.27 -0.1 783,618 + HMPREF1078_RS03310 0.40 +1.5 783,709 - HMPREF1078_RS03310 0.58 +0.6 783,712 + HMPREF1078_RS03310 0.59 +1.3 783,713 - HMPREF1078_RS03310 0.59 +1.3 783,713 - HMPREF1078_RS03310 0.59 -1.0 783,713 - HMPREF1078_RS03310 0.59 -0.6 783,912 + -1.1 783,916 - -0.5 783,922 - +0.5 783,922 - -0.7 783,929 + +0.9 784,222 - HMPREF1078_RS03315 0.50 -0.5 784,222 - HMPREF1078_RS03315 0.50 -1.6 784,222 - HMPREF1078_RS03315 0.50 -0.2 784,223 + HMPREF1078_RS03315 0.50 -0.1 784,223 + HMPREF1078_RS03315 0.50 -0.4 784,224 - HMPREF1078_RS03315 0.50 +0.2 784,251 + HMPREF1078_RS03315 0.55 -1.0 784,252 - HMPREF1078_RS03315 0.55 +0.7 784,300 + HMPREF1078_RS03315 0.63 -0.3 784,301 - HMPREF1078_RS03315 0.63 -1.6 784,301 - HMPREF1078_RS03315 0.63 +0.5 784,378 + HMPREF1078_RS03315 0.76 +1.1 784,383 - HMPREF1078_RS03315 0.77 -0.4 784,471 + +0.1 784,471 + -1.5 784,515 + -1.4 784,515 + +0.2 784,521 + -1.7 784,522 - -0.4 784,522 - -2.5 784,551 - +2.0 784,610 - -0.1 784,673 + HMPREF1078_RS03320 0.12 -2.6 784,673 + HMPREF1078_RS03320 0.12 -0.3 784,674 - HMPREF1078_RS03320 0.12 +0.2 784,719 - HMPREF1078_RS03320 0.16 -0.7 784,719 - HMPREF1078_RS03320 0.16 -0.3 784,719 - HMPREF1078_RS03320 0.16 -1.4 784,725 + HMPREF1078_RS03320 0.16 -0.7 784,725 + HMPREF1078_RS03320 0.16 -0.3 784,725 + HMPREF1078_RS03320 0.16 -0.3 784,726 - HMPREF1078_RS03320 0.16 +0.7 784,742 - HMPREF1078_RS03320 0.18 +2.0 784,753 - HMPREF1078_RS03320 0.19 +0.6 784,753 - HMPREF1078_RS03320 0.19 +1.3 784,757 - HMPREF1078_RS03320 0.19 +0.7 784,836 + HMPREF1078_RS03320 0.26 +0.0 784,863 + HMPREF1078_RS03320 0.29 -1.8 784,882 + HMPREF1078_RS03320 0.30 -0.7 784,883 - HMPREF1078_RS03320 0.30 -1.3 784,884 + HMPREF1078_RS03320 0.30 +1.1 784,884 + HMPREF1078_RS03320 0.30 +1.4 784,885 - HMPREF1078_RS03320 0.30 +0.7 784,885 - HMPREF1078_RS03320 0.30 -2.5 784,887 + HMPREF1078_RS03320 0.31 +0.2 784,887 + HMPREF1078_RS03320 0.31 -0.6 784,897 + HMPREF1078_RS03320 0.32 -0.5 784,897 + HMPREF1078_RS03320 0.32 -0.3 784,897 + HMPREF1078_RS03320 0.32 +0.2 784,898 - HMPREF1078_RS03320 0.32 +0.4 784,899 + HMPREF1078_RS03320 0.32 -0.2 784,899 + HMPREF1078_RS03320 0.32 +1.0 784,899 + HMPREF1078_RS03320 0.32 -0.5 784,899 + HMPREF1078_RS03320 0.32 -0.3 784,899 + HMPREF1078_RS03320 0.32 -0.7
Or see this region's nucleotide sequence